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Aliases & Descriptions for KCNC4
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases HKSHIIIC 1 , 2 KSHIIIC 2 , 3 KV3.4 2 Kv3.4 1 MGC126818 2
Descriptions Shaw-related voltage-gated potassium channel protein 4 2 Voltage-gated potassium channel subunit Kv3.4 2 , 3 potassium voltage-gated channel subfamily C member 4 2 potassium voltage-gated channel, Shaw-related subfamily, member 4 2
Search outside databases for aliases for KCNC4 genePrevious GC identifers: GC01P111170 GC01P109620 GC01P109856 GC01P110052 GC01P110466
Summaries for KCNC4 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for KCNC4 : The Shaker gene family of Drosophila encodes components of voltage-gated potassium channels and iscomprised of four subfamilies. Based on sequence similarity, this gene is similar to the Shawsubfamily. The protein encoded by this gene belongs to the delayed rectifier class of channelproteins and is an integral membrane protein that mediates the voltage-dependent potassium ionpermeability of excitable membranes. It generates atypical voltage-dependent transient currentthat may be important for neuronal excitability. Several transcript variants encoding differentisoforms have been found for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: KCNC4_HUMAN, Q03721 Function : This protein mediates the voltage-dependent potassium ion permeability of excitablemembranes. Assuming opened or closed conformations in response to the voltage difference acrossthe membrane, the protein forms a potassium-selective channel through which potassium ions maypass in accordance with their electrochemical gradient
Gene Wiki entry for KCNC4
Genomic Location for KCNC4
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
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Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the KCNC4 gene Entrez Gene cytogenetic band: 1p21 Ensembl cytogenetic band: 1p13.3 HGNC cytogenetic band: 1p21 KCNC4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01P110555:
(about GC identifiers )
Start:
110,555,588 bp from pter
End:
110,578,189 bp from pter
Size:
22,602 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000001.9 NT_019273.18 Proteins for KCNC4
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: KCNC4_HUMAN, Q03721 (See
protein sequence )Recommended Name: Potassium voltage-gated channel subfamily C member 4 Size : 635 amino acids; 69767 Da
Subunit : Homotetramer (Probable). Heterotetramer of potassium channel proteins (By similarity)
Subcellular location : Membrane; Multi-pass membrane protein
Secondary accessions : Q3MIM4 Q5TBI6Alternative splicing : 2 isoforms : Q03721-1 Q03721-2
Post-translational modifications:
Phosphorylation of serine residues in the inactivation gate inhibits rapid channel closure1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_001034663.1 NP_004969.2 NP_720198.1 ENSEMBL proteins: ENSP00000358802 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for KCNC4: Assays for KCNC4:
Protein
Domains/ Families for KCNC4(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q03721 ProtoNet protein and cluster: Q03721
4 Blocks protein families : IPB000210 BTB/POZ domain IPB003091 Potassium channel signature IPB003974 Shaw voltage-gated K+ channel family signature IPB005405 Kv3.4 voltage-gated K+ channel signature UniProtKB/Swiss-Prot: KCNC4_HUMAN, Q03721 Domain : The segment S4 is probably the voltage-sensor and is characterized by a series ofpositively charged amino acids at every third position Domain : The tail may be important in modulation of channel activity and/or targeting of the channelto specific subcellular compartments Similarity : Belongs to the potassium channel family. C (Shaw) subfamily
Gene Function for KCNC4
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_004978 Applied Biosystems Silencer ® siRNAs for KCNC4 Sigma-Aldrich siRNA and siRNA Panels for KCNC4 Sigma-Aldrich shRNA Panels and shRNA for KCNC4 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001039574                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001039574                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001039574  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004978 UniProtKB/Swiss-Prot: KCNC4_HUMAN, Q03721 Function : This protein mediates the voltage-dependent potassium ion permeability of excitablemembranes. Assuming opened or closed conformations in response to the voltage difference acrossthe membrane, the protein forms a potassium-selective channel through which potassium ions maypass in accordance with their electrochemical gradient
Genatlas biochemistry entry for KCNC4 :potassium voltage-gated channel,Drosophila Shaw-related subfamily,member 4 (mouse Kv3.4 homolog) 1 MGI phenotypic allele for Kcnc4 (no phenotypes)4 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for KCNC4
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for KCNC4 5/44 Interacting proteins for KCNC4 (ENSP00000358802 3 ) via UniProtKB, MINT, and/or STRING (see all 44
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for KCNC4 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Compounds for KCNC4 available from Tocris Bioscience About this table 1 Novoseek chemical compound relationship for KCNC4 gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
potassium
32.84
2
1740329 (1), 16449802 (1)
About this table
Transcripts for KCNC4(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
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OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_004978 Sigma-Aldrich siRNA and siRNA Panels for KCNC4 Sigma-Aldrich shRNA Panels and shRNA for KCNC4 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001039574 NM_004978 NM_153763
REFSEQ mRNAs for KCNC4 gene (3 alternative transcripts): NM_001039574.1 NM_004978.3 NM_153763.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001039574 NM_004978 NM_153763
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001039574                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001039574                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001039574  
Additional cDNA sequence: AK125567.1 AK295076.1 AK310193.1 BC025377.1 BC101769.1 M64676.1
7 DOTS entries : DT.311563 DT.409905 DT.307427 DT.100641280 DT.99997196 DT.40230555 DT.121387696
24/96 AceView cDNA sequences (see all 96
):BM966921 BQ022636 BM765446 Z38845 BM966789 BQ189347 BM966873 CK823243 BX489205 AI860726 AK125567 BX098184 NM_153763 BM966756 AW237067 F03407 BC025377 NM_004978 AA298743 AA326357 BX537638 AW614375 BF589547 BM893669
highest scoring ESTs for KCNC4 :H11376 AA435735 AA678581 AA775645 AA809591 AI240989 AI369490 AI826475 AI916965 AK125567
Unigene Cluster for KCNC4: Potassium voltage-gated channel, Shaw-related subfamily, member 4 Hs.153521 [show with all ESTs ] Unigene Representative Sequence: NM_004978 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for KCNC4 ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b · 3c ^ 4a · 4b · 4c SP1 :         -   -   -         SP2 :         -   -   -         SP3 :                     SP4 :                    
About this scheme ECgene alternative splicing isoforms for KCNC4 1 Ensembl transcript including schematic representation : ENST00000369787
Expression for KCNC4
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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KCNC4 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for KCNC4 1 / 2 / 3
10 probe-sets matching KCNC4 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CTGTGCTCGASOURCE GeneReport for Unigene cluster: Hs.153521 Expression variation in blood from EXPOLDB for KCNC4
Orthologs for KCNC4
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for KCNC4 gene from 5/7 species (see all 7
)
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
KCNC41
--
potassium voltage-gated channel, Shaw-related subfamily, more
91.61(n) 93.71(a)
490114 XM_547235.2 XP_547235.2
chimpanzee (Pan troglodytes)
KCNC41
--
potassium voltage-gated channel, Shaw-related subfamily, more
98.64(n) 98.86(a)
457122 XM_001163574.1 XP_001163574.1
cow (Bos taurus)
KCNC41
--
potassium voltage-gated channel, Shaw-related subfamily, more
91.09(n) 94.81(a)
540768 XM_613047.3 XP_613047.2
mouse (Mus musculus)
Kcnc41 , 5
3 (53.00 cM) 5
potassium voltage gated channel, Shaw-related subfamily, more 1, 5
89.13(n) 1 97.03(a) 1
99738 1 NM_145922.2 1 NP_666034.1 1 AI849951 5 AI850292 5 (see all 13 )
zebrafish (Danio rerio)
DKEY-71L10.11
--
novel protein similar to vertebrate potassium voltage-gated more
71.17(n) 73.62(a)
799410 XM_001923984.1 XP_001924019.1
About this table Species with no ortholog for KCNC4 ENSEMBL Gene Tree for KCNC4 Paralogs for KCNC4 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for KCNC4 gene KCNC2 2 KCNC1 2 KCNC3 2
SNPs/Variants for KCNC4 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for KCNC4 (up to first 250kb)
Disorders & Mutations for KCNC4
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 176265
Medical News for KCNC4 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for KCNC4 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/14 PubMed articles for KCNC4 gene (see all 14
): Genomic organization, nucleotide sequence, and cellular distribution of a Shaw-related potassium channel gene, Kv3.3, and mapping of Kv3.3 and Kv3.4 to human chromosomes 19 and 1. (PubMed id 1740329) 1, 2, 3 Ghanshani S....Chandy K.G. (1992) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 3, 4 Gregory S.G.... Bentley D.R. (2006) International Union of Pharmacology. LIII. Nomenclature and molecular relationships of voltage-gated potassium channels. (PubMed id 16382104) 2, 3 Gutman G.A....Wang X. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Interactions between multiple phosphorylation sites in the inactivation particle of a K+ channel. Insights into the molecular mechanism of protein kinase C action. (PubMed id 9649584) 3, 4 Beck E.J.... Covarrubias M. (1998) Elimination of rapid potassium channel inactivation by phosphorylation of the inactivation gate. (PubMed id 7993631) 3, 4 Covarrubias M.... Vyas T.B. (1994) Cloning of ShIII (Shaw-like) cDNAs encoding a novel high-voltage- activating, TEA-sensitive, type-A K+ channel. (PubMed id 1381835) 3, 4 de Miera E.V.-S.... Rudy B. (1992) Cloning of a human cDNA expressing a high voltage-activating, TEA-sensitive, type-A K+ channel which maps to chromosome 1 band p21. (PubMed id 1920536) 2, 3 Rudy B....Ward D.C. (1991) Phosphorylation and protonation of neighboring MiRP2 sites: function and pathophysiology of MiRP2-Kv3.4 potassium channels in periodic paralysis. (PubMed id 16449802) 1, 3 Abbott G.W....Goldstein S.A. (2006) Up-regulation of the Kv3.4 potassium channel subunit in early stages of Alzheimer's disease. (PubMed id 15485486) 3 Angulo E....Franco R. (2004)
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Genome Databases showing KCNC4
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing KCNC4
(According to HUGE )
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Specialized Databases showing KCNC4 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for KCNC4 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for KCNC4:
Tocris compounds for KCNC4
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