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KCNC2 Gene

protein-coding   GIFtS: 56

GC12M073720
potassium voltage-gated channel, Shaw-related subfamily, member 2
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
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Aliases &
Descriptions
for KCNC2

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section
Aliases
KV3.2 2
Kv3.2 1
MGC138196 2
Descriptions
Shaw-related voltage-gated potassium channel protein 2 2
Voltage-gated potassium channel Kv3.2 3
potassium voltage-gated channel, Shaw-related subfamily,
member 2 2
External Ids
HGNC: 62341
Entrez Gene: 37472
UniProtKB: Q96PR13
Ensembl: ENSG000001660067
Search outside databases for aliases for KCNC2 gene

Previous GC identifers: GC12P074022 GC12M075342 GC12M075150

Summaries
for KCNC2

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

 EntrezGene summary for KCNC2:
The Shaker gene family of Drosophila encodes components of voltage-gated potassium channels and is
comprised of four subfamilies. Based on sequence similarity, this gene is similar to one of these
subfamilies, namely the Shaw subfamily. The protein encoded by this gene belongs to the delayed
rectifier class of channel proteins and is an integral membrane protein that mediates the
voltage-dependent potassium ion permeability of excitable membranes. Three transcript variants
encoding three different isoforms have been found for this gene. [provided by RefSeq]

UniProtKB/Swiss-Prot: KCNC2_HUMAN, Q96PR1
Function: Mediates the voltage-dependent potassium ion permeability of excitable membranes.
Assuming opened or closed conformations in response to the voltage difference across the membrane,
the protein forms a potassium-selective channel through which potassium ions may pass in
accordance with their electrochemical gradient. Channel properties are modulated by subunit
assembly (By similarity)

Genomic Location
for KCNC2

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

 Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the KCNC2 gene  

Entrez Gene cytogenetic band: 12q14.1   Ensembl cytogenetic band:  12q21.1   HGNC cytogenetic band: 12q14.1

KCNC2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12M073720:     (about GC identifiers)

Start:
 73,720,163 bp from pter
End:
 73,889,778 bp from pter
Size:
 169,616 bases
Orientation:
 minus strand
RefSeq DNA sequence:
NC_000012.10  NT_029419.11  

Proteins
for KCNC2

(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

 UniProtKB/Swiss-Prot: KCNC2_HUMAN, Q96PR1 (See protein sequence)
Recommended Name: Potassium voltage-gated channel subfamily C member 2  
Size: 638 amino acids; 70226 Da
Subunit: The potassium channel is probably composed of a homo- or heterotetrameric complex of
pore-forming subunits that can associate with modulating accessory subunits. Interacts with KCNC1,
KCNE1, KCNE2 and KCNE3 (By similarity)
Subcellular location: Membrane; Multi-pass membrane protein
Secondary accessions: Q4LE77 Q86W09 Q8N1V9 Q96PR0
Alternative splicing: 4 isoforms:  Q96PR1-1   Q96PR1-2   Q96PR1-3   Q96PR1-4   

REFSEQ proteins (3 alternative transcripts): 
NP_631874.1  NP_631875.1  NP_715624.1  


ENSEMBL proteins: 
ENSP00000340121 ENSP00000376966 ENSP00000298972 ENSP00000319877 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Millipore Purified and/or Recombinant KCNC2 Protein
Browse Human Recombinant Proteins at Sigma-Aldrich  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (Kv3.2)
Browse Abnova for Human Recombinant Proteins
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

3 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0008076 voltage-gated potassium channel complex IEA--
GO:0016020 membrane IEA--
GO:0016021 integral to membrane IEA--
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Antibodies for KCNC2: 
Browse Antibodies Central at Invitrogen
Millipore Mono- and Polyclonal Antibodies for the study of KCNC2
Sigma-Aldrich Antibodies for KCNC2
Browse R&D Systems for Antibodies
Antibodies from Abcam (Kv3.2), each with their AbpromiseSM
Browse Abnova for Monoclonal and Polyclonal Antibodies
Search Novus for antibodies for KCNC2

Assays for KCNC2: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

Protein Domains/
Families
for KCNC2

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
5/7 InterPro domains/families (see all 7 ):
 IPR005821 Ion_trans
 IPR000210 BTB/POZ-like
 IPR011333 BTB/POZ_fold
 IPR003968 K_chnl_volt-dep_Kv
 IPR003131 K_chnl_volt-dep_Kv_tetra


   GeneDecks  KCNC2 for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry Q96PR1

ProtoNet protein and cluster: Q96PR1

3 Blocks protein families:
IPB000210 BTB/POZ domain
IPB003091 Potassium channel signature
IPB003974 Shaw voltage-gated K+ channel family signature


UniProtKB/Swiss-Prot: KCNC2_HUMAN, Q96PR1
Domain: The segment S4 is probably the voltage-sensor and is characterized by a series of
positively charged amino acids at every third position
Domain: The tail may be important in modulation of channel activity and/or targeting of the channel
to specific subcellular compartments
Similarity: Belongs to the potassium channel family. C (Shaw) subfamily

Gene Function
for KCNC2

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section
Inhib.
RNA:		Invitrogen RNAi Products for gene knock-down (KCNC2)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (KCNC2)
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3): NM_153748

              Applied Biosystems Silencer® siRNAs for KCNC2

              Sigma-Aldrich siRNA and siRNA Panels for KCNC2  
                     Sigma-Aldrich shRNA Panels and shRNA for KCNC2  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Browse Clone Ranger at Invitrogen for clones
Millipore Clones for the Expression of KCNC2
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3): NM_139136
                                 Myc/DDK tagged cDNA clones in CMV expression vector (see all 3): NM_139136
                                 untagged cDNA clones in CMV expression vector (see all 3): NM_139136 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_139137

UniProtKB/Swiss-Prot: KCNC2_HUMAN, Q96PR1
Function: Mediates the voltage-dependent potassium ion permeability of excitable membranes.
Assuming opened or closed conformations in response to the voltage difference across the membrane,
the protein forms a potassium-selective channel through which potassium ions may pass in
accordance with their electrochemical gradient. Channel properties are modulated by subunit
assembly (By similarity)

Genatlas biochemistry entry for KCNC2:
potassium voltage-gated channel,Drosophila Shaw-related subfamily,member 2 (mouse Kv3.2 homolog)

4 MGI mutant phenotypes (inferred from 1 allele) (MGI details for Kcnc2):

behavior/neurologicalhomeostasis/metabolismmusclenervous system

4 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005244 voltage-gated ion channel activity IEA--
GO:0005249 voltage-gated potassium channel activity IEA--
GO:0005515 protein binding IEA--
GO:0030955 potassium ion binding IEA--
About this table

Pathways & Interactions
for KCNC2

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section


1 Millipore Pathway for KCNC2
  outward current

   GeneDecks  KCNC2 for the pathways selected above  
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4 Interacting proteins for KCNC2 (ENSP000003401213) via UniProtKB, MINT, and/or STRING
InteractantInteraction Details
GeneCardExternal ID(s)
KCNH2ENSP000002621863STRING (score=.739)
KCNAB2ENSP000003673233STRING (score=.733)
KCNAB1ENSP000003058583STRING (score=.73)
--ENSP000003696593STRING (score=.746)
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2 Gene Ontology (GO) biological process terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0006811 ion transport IEA--
GO:0006813 potassium ion transport IEA--
About this table

Drugs & Compounds
for KCNC2

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Enzo Life Sciences drugs & compounds for KCNC2
Browse Small Molecules at Sigma-Aldrich

Compounds for KCNC2 available from Tocris Bioscience
CompoundAction CAS number
Chromanol 293BIKs blocker. Also blocks ICFTR[163163-23-3]
AM 92016 hydrochlorideKV channel blocker[178894-81-0]
KN-93CaM kinase II inhibitor. Also K+ channel blocker (KV)[139298-40-1]
(-)-[3R,4S]-Chromanol 293BIKs blocker. Enantiomer of (Cat. No. 1412)[163163-24-4]
4-AminopyridineK+ channel blocker[504-24-5]
About this table



Transcripts
for KCNC2

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section
Inhib.
RNA:		Invitrogen RNAi Products for gene knock-down (KCNC2)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (KCNC2)
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3): NM_153748

              Sigma-Aldrich siRNA and siRNA Panels for KCNC2  
                     Sigma-Aldrich shRNA Panels and shRNA for KCNC2  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_139136  NM_139137  NM_153748  

REFSEQ mRNAs for KCNC2 gene (3 alternative transcripts): 

NM_139136.2   NM_139137.2   NM_153748.1   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_139136  NM_139137  NM_153748  

               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3): NM_139136
                                 Myc/DDK tagged cDNA clones in CMV expression vector (see all 3): NM_139136
                                 untagged cDNA clones in CMV expression vector (see all 3): NM_139136 

Additional cDNA sequence: 

AB209994.1 AF268896.1 AF268897.2 AK094720.1 AK126235.1 AK294269.1 AK309245.1 AY118169.1 
AY243473.1 BC093635.1 BC111991.1 

6 DOTS entries:

DT.100017577  DT.446028  DT.91748018  DT.97785276  DT.92418515  DT.121110168 

24/55 AceView cDNA sequences (see all 55 ):

AW205270 AK094720 F07855 BE549574 CD636720 NM_139136 F04114 F01811 
AI363404 CD636734 NM_153748 F05540 AI868421 AW054849 BE550188 NM_139137 
BM709602 AY118169 BX952991 AK126235 CD105582 AW136180 CD636730 BM921374 

highest scoring ESTs for KCNC2:

AK094720 AW054849 AW131785 AW131827 AW165975 AB209994 AF268896 AF268897 AI363404 AI868421 

Unigene Cluster for KCNC2:

Potassium voltage-gated channel, Shaw-related subfamily, member 2
Hs.27214  [show with all ESTs]
Unigene Representative Sequence: AB209994


GeneLoc Exon Structure

4 Ensembl transcripts including schematic representations:
ENST00000341669  ENST00000393288  ENST00000298972  ENST00000350228  

Expression
for KCNC2

(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

KCNC2 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for KCNC2

1 / 2 / 3

4 probe-sets matching KCNC2 gene


Affymetrix
probe-set		 Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
75818_at2, 3 U95-E 1 1.00 1.00 0.96 0.94 AA868101 0.40 1.00 0.76 1
46958_at2, 3 U95-B 1 1.00 1.00 0.97 1.08 AI868421 0.60 1.00 0.82 1

240614_at2, 3 U133-B 1 1.00 1.00 -- -- AW131785 0.80 1.00 0.91 1

240614_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
GeneDecks  KCNC2 for binary patterns associated with the probe-sets selected above  
About GeneDecksing
About this table    
Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: CACAACCTTG

SOURCE GeneReport for Unigene cluster: Hs.27214

Orthologs
for KCNC2

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section
Orthologs for KCNC2 gene from 5/6 species (see all 6 )
Organism Gene Locus Description Human
Similarity		 NCBI accessions
dog
(Canis familiaris)		 KCNC21   -- potassium voltage-gated channel, Shaw-related subfamily, more 92.2(n)
96.15(a)		 481168  XM_538289.2  XP_538289.2 
rat
(Rattus norvegicus)		 Kcnc21   -- potassium voltage gated channel, Shaw-related subfamily, more 90.28(n)
97.65(a)		 246153  NM_139217.1  NP_631963.1 
mouse
(Mus musculus)		 Kcnc21, 5 10 (62.00 cM)5
 potassium voltage gated channel, Shaw-related subfamily, more1, 5 89.54(n)1
97.64(a)1		 2683451  NM_001025581.11  NP_001020752.11 
 AK0340535  AK0429375  (see all 13)
chicken
(Gallus gallus)		 KCNC21   -- potassium voltage-gated channel, Shaw-related subfamily, more 83.86(n)
90(a)		 772061  XM_001235254.1  XP_001235255.1 
fruit fly
(Drosophila melanogaster)		 CG44503 30B1--2 voltage-gated potassium channel 48(a)
(best of 2)		   --
About this table        Species with no ortholog for KCNC2

ENSEMBL Gene Tree for KCNC2

Paralogs
for KCNC2

(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for KCNC2 gene
KCNC42  KCNC12  KCNC32  

SNPs/Variants
for KCNC2

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/1058 NCBI SNPs in KCNC2 are shown (see all 1058 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 414)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 12 posSequenceRecsAA
Chg		TypeMoreRecsAllele
freq		PopTotal
sample		More
------------
--
rs108798741,2
A,F,H73719796(+) TCGAGA/GACAGC 2 -- ng514Minor allele frequency- G:0.32EU EA WA 416
rs24463201,2
A,C,H73889483(+) GATCTA/GCGGAT 3 -- ut51 ese33Minor allele frequency- G:0.00EU EA 300
rs123153321,2
F,H73721074(+) CAGCCG/ACAGTT 2 -- ut31 ese33Minor allele frequency- A:0.01EA WA 292
rs79627061,2
H73891103(+) TAAACG/ATCTAT 3 -- ng314Minor allele frequency- A:0.00EU EA WA 414
rs128135181,2
H73722723(+) CTGACA/GCAAGT 3 -- int1 ng51 ese34Minor allele frequency- G:0.00EU EA WA 416
rs128141871,2
H73722850(+) TCCCTG/CAAGGT 3 -- int1 ng51 ese34Minor allele frequency- C:0.00EU EA WA 408
rs22493881,2
A,C,F,H,O73882031(-) TTCTTT/CGAACT 3 -- int16Minor allele frequency- C:0.38EU EA NA 440
rs24463301,2
A,C,F,H,O73843961(-) AACAGC/TAGCAA 3 -- int113Minor allele frequency- T:0.29NA EU EA WA 1160
rs24716441,2
A,C,F,H,O73879455(-) ACTGGT/CCTTCT 3 -- int1 trp311Minor allele frequency- C:0.49NA EU EA WA 920
rs24463471,2
A,C,F,H,O73872255(-) GGAGCA/GCAGGA 3 -- int19Minor allele frequency- G:0.39NA EU EA WA 734
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HapMap Linkage Disequilibrium images for KCNC2 (up to first 250kb)

Disorders & Mutations
for KCNC2

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

 OMIM: 176256

Medical News
for KCNC2

(Possibly Related Articles in Doctor's Guide)
About This Section

   --

Publications
for KCNC2

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

7 PubMed articles for KCNC2 gene:

Search for KCNC2

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  
  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

Genome Databases showing KCNC2

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section
Entrez Gene: 3747 HGNC: 6234 AceView: KCNC2 Ensembl:ENSG00000166006 euGenes: HUgn3747
ECgene: KCNC2 H-InvDB: KCNC2

Other Databases showing KCNC2

(According to HUGE)
About This Section

   --

Specialized Databases showing KCNC2

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

   --

Licensable Technologies
for KCNC2

(Available from WIS Yeda, Salk, Tufts)
About This Section

  --

Services
for KCNC2

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for KCNC2:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



  Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
  Invitrogen Antibodies  Invitrogen Assays
  Invitrogen Clones  Invitrogen Q-PCR Products
  Invitrogen Human Recombinant Kinases  Invitrogen Custom Antibody and Peptide Service
  Invitrogen Proteins / Assays / Screening Services  Search Invitrogen catalog for KCNC2-related products

 Millipore Custom Antibody & Bulk Services
 Millipore Preclinical / Clinical Development Services
 Millipore Immunoassay Services
 Millipore Target Screening & Profiling Services


 Predesigned and custom siRNAs for KCNC2 Antibodies for KCNC2
 Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
 Lentivirus-delivered shRNAs for KCNC2 Browse small molecules at Sigma-Aldrich
 "Your Favorite Gene" Pathwaysfeedback


  
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 Tocris compounds for KCNC2




 Drugs for KCNC2
 Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
 Search Novus for antibodies for KCNC2

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