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Aliases & Descriptions for KCNC1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases FLJ41162 2 FLJ42249 2 FLJ43491 2 KV3.1 2 KV4 2 Kv3.1 1 Kv4 3 MGC129855 2 NGK2 2 , 3
Descriptions Shaw-related voltage-gated potassium channel protein 1 2 Voltage-gated potassium channel subunit Kv3.1 3 potassium voltage-gated channel subfamily C member 1 2 potassium voltage-gated channel, Shaw-related subfamily, member 1 2 voltage-gated potassium channel protein KV3.1 2
Search outside databases for aliases for KCNC1 genePrevious GC identifers: GC11P018878 GC11P018699 GC11P017796 GC11P017721 GC11P017681
Summaries for KCNC1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for KCNC1 : The Shaker gene family of Drosophila encodes components of voltage-gated potassium channels and iscomprised of four subfamilies. Based on sequence similarity, this gene is similar to one of thesesubfamilies, namely the Shaw subfamily. The protein encoded by this gene belongs to the delayedrectifier class of channel proteins and is an integral membrane protein that mediates thevoltage-dependent potassium ion permeability of excitable membranes. Multiple transcript variantsencoding different isoforms have been inferred for this gene based on orthologous loci. [providedby RefSeq] UniProtKB/Swiss-Prot: KCNC1_HUMAN, P48547 Function : Mediates the voltage-dependent potassium ion permeability of excitable membranes.Assuming opened or closed conformations in response to the voltage difference across the membrane,the protein forms a potassium-selective channel through which potassium ions may pass inaccordance with their electrochemical gradient
Gene Wiki entry for KCNC1
Genomic Location for KCNC1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the KCNC1 gene Entrez Gene cytogenetic band: 11p15 Ensembl cytogenetic band: 11p15.1 HGNC cytogenetic band: 11p15 KCNC1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11P017712:
(about GC identifiers )
Start:
17,714,090 bp from pter
End:
17,750,755 bp from pter
Size:
36,666 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000011.8 NT_009237.17 Proteins for KCNC1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: KCNC1_HUMAN, P48547 (See
protein sequence )Recommended Name: Potassium voltage-gated channel subfamily C member 1 Size : 511 amino acids; 57942 Da
Subunit : Heteromultimer with KCNG3, KCNG4 and KCNV2
Subcellular location : Membrane; Multi-pass membrane protein
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001106212.1 NP_004967.1 ENSEMBL proteins: ENSP00000265969 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for KCNC1: Assays for KCNC1:
Protein
Domains/ Families for KCNC1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P48547 ProtoNet protein and cluster: P48547
4 Blocks protein families : IPB000210 BTB/POZ domain IPB003091 Potassium channel signature IPB003974 Shaw voltage-gated K+ channel family signature IPB005403 Kv3.1 voltage-gated K+ channel signature UniProtKB/Swiss-Prot: KCNC1_HUMAN, P48547 Domain : The segment S4 is probably the voltage-sensor and is characterized by a series ofpositively charged amino acids at every third position Domain : The tail may be important in modulation of channel activity and/or targeting of the channelto specific subcellular compartments Similarity : Belongs to the potassium channel family. C (Shaw) subfamily
Gene Function for KCNC1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_004976 Applied Biosystems Silencer ® siRNAs for KCNC1 Sigma-Aldrich siRNA and siRNA Panels for KCNC1 Sigma-Aldrich shRNA Panels and shRNA for KCNC1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001112741                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001112741                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001112741  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001112741 UniProtKB/Swiss-Prot: KCNC1_HUMAN, P48547 Function : Mediates the voltage-dependent potassium ion permeability of excitable membranes.Assuming opened or closed conformations in response to the voltage difference across the membrane,the protein forms a potassium-selective channel through which potassium ions may pass inaccordance with their electrochemical gradient
Genatlas biochemistry entry for KCNC1 :potassium voltage-gated channel,Drosophila Shaw-related family,member 1 (mouse Kv3.1 homolog)
4 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Kcnc1) :4 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for KCNC1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for KCNC1 5/50 Interacting proteins for KCNC1 (ENSP00000265969 3 ) via UniProtKB, MINT, and/or STRING (see all 50
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for KCNC1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Compounds for KCNC1 available from Tocris Bioscience About this table 1 Novoseek chemical compound relationship for KCNC1 gene
About this table
Transcripts for KCNC1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_004976 Sigma-Aldrich siRNA and siRNA Panels for KCNC1 Sigma-Aldrich shRNA Panels and shRNA for KCNC1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001112741 NM_004976
REFSEQ mRNAs for KCNC1 gene (2 alternative transcripts): NM_001112741.1 NM_004976.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001112741 NM_004976
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001112741                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001112741                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001112741  
Additional cDNA sequence: AK123157.1 AK124243.1 AK125480.1 BC107129.2 L00621.1 M96747.1 S56770.1
7 DOTS entries : DT.436620 DT.91834707 DT.40206707 DT.97829556 DT.120700095 DT.91720841 DT.95244524
5 AceView cDNA sequences :M96747 CK903961 BM053045 BQ187015 H19662
highest scoring ESTs for KCNC1 :S56770 AW898499 BG707883 BI490132 BQ187015 BX090988 H19662 H50388 L00621 M96747
Unigene Cluster for KCNC1: Potassium voltage-gated channel, Shaw-related subfamily, member 1 Hs.552896 [show with all ESTs ] Unigene Representative Sequence: NM_004976 GeneLoc Exon Structure 1 Ensembl transcript including schematic representation : ENST00000265969
Expression for KCNC1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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KCNC1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for KCNC1 1 / 2 / 3
6 probe-sets matching KCNC1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.552896 Expression variation in blood from EXPOLDB for KCNC1
Orthologs for KCNC1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for KCNC1 gene from 5/11 species (see all 11
)
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
KCNC11
--
potassium voltage-gated channel, Shaw-related subfamily, more
94.91(n) 98.61(a)
403705 NM_001003113.1 NP_001003113.1
chimpanzee (Pan troglodytes)
KCNC11
--
potassium voltage-gated channel, Shaw-related subfamily, more
99.6(n) 99.6(a)
466452 XM_001172719.1 XP_001172719.1
cow (Bos taurus)
KCNC11
--
potassium voltage-gated channel, Shaw-related subfamily, more
95.04(n) 99.41(a)
541459 NM_001013605.1 NP_001013623.1
rat (Rattus norvegicus)
Kcnc11
--
potassium voltage gated channel, Shaw-related subfamily, more
93.12(n) 99.4(a)
25327 NM_012856.1 NP_036988.1
mouse (Mus musculus)
Kcnc11 , 5
7 (23.50 cM) 5
potassium voltage gated channel, Shaw-related subfamily, more 1, 5
93.67(n) 1 99.8(a) 1
16502 1 NM_008421.2 1 NP_032447.1 1 AI848070 5 AK079373 5 (see all 17 )
About this table Species with no ortholog for KCNC1 ENSEMBL Gene Tree for KCNC1 Paralogs for KCNC1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for KCNC1 gene KCNC2 2 KCNC4 2 KCNC3 2
SNPs/Variants for KCNC1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for KCNC1 (up to first 250kb)
Disorders & Mutations for KCNC1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 176258
Medical News for KCNC1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for KCNC1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/22 PubMed articles for KCNC1 gene (see all 22
): Localization of a highly conserved human potassium channel gene (NGK2-KV4; KCNC1) to chromosome 11p15. (PubMed id 8449507) 1, 2, 3, 4 Ried T.... Sen K. (1993) The Shaw-related potassium channel gene, Kv3.1, on human chromosome 11, encodes the type l K+ channel in T cells. (PubMed id 1400413) 1, 3, 4 Grissmer S.... Chandy K.G. (1992) International Union of Pharmacology. LIII. Nomenclature and molecular relationships of voltage-gated potassium channels. (PubMed id 16382104) 2, 3 Gutman G.A....Wang X. (2005) Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560) 3 Kimura K.... Sugano S. (2006) Tyrosine phosphorylated Par3 regulates epithelial tight junction assembly promoted by EGFR signaling. (PubMed id 17053785) 4 Wang Y.... Chen Z. (2006) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3 Ota T....Sugano S. (2004) Kv3.1b is a novel component of CNS nodes. (PubMed id 12805291) 3 Devaux J....Scherer S.S. (2003) Obligatory heterotetramerization of three previously uncharacterized Kv channel alpha-subunits identified in the human genome. (PubMed id 12060745) 3 Ottschytsch N.... Snyders D.J. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 3 Strausberg R.L....Marra M.A. (2002) Assembly of voltage-gated potassium channels. Conserved hydrophilic motifs determine subfamily-specific interactions between the alpha-subunits. (PubMed id 7559593) 3 Xu J....Li M. (1995)
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Genome Databases showing KCNC1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing KCNC1
(According to HUGE )
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--
Specialized Databases showing KCNC1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for KCNC1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for KCNC1:
Tocris compounds for KCNC1
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