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Aliases & Descriptions for KCNB1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| DRK1 2 | | KV2.1 2 | | Kv2.1 1 | | OTTHUMP00000031697 2 | | h-DRK1 2, 3 |
| | | Descriptions |
|---|
| Voltage-gated potassium channel subunit Kv2.1 3 | | delayed rectifier potassium channel Kv2.1 2 | | h-DRK1 K(+) channel 2 | | potassium channel protein DRK1 2 | | potassium voltage-gated channel subfamily B member 1 2 | potassium voltage-gated channel, Shab-related subfamily, member 1 2 | | voltage-gated potassium channel 2 |
|
| | Search outside databases for aliases for KCNB1 genePrevious GC identifers: GC20M047717 GC20M048626 GC20M048673 |
Summaries for KCNB1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for KCNB1: Voltage-gated potassium (Kv) channels represent the most complex class of voltage-gated ion channels from both functional and structural standpoints. Their diverse functions include regulating neurotransmitter release, heart rate, insulin secretion, neuronal excitability, epithelial electrolyte transport, smooth muscle contraction, and cell volume. Four sequence-related potassium channel genes - shaker, shaw, shab, and shal - have been identified in Drosophila, and each has been shown to have human homolog(s). This gene encodes a member of the potassium channel, voltage-gated, shab-related subfamily. This member is a delayed rectifier potassium channel and its activity is modulated by some other family members. [provided by RefSeq] UniProtKB/Swiss-Prot: KCNB1_HUMAN, Q14721Function: Mediates the voltage-dependent potassium ion permeability of excitable membranes. Channels open or close in response to the voltage difference across the membrane, letting potassium ions pass in accordance with their electrochemical gradientGene Wiki entry for KCNB1 |
Genomic Location for KCNB1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the KCNB1 gene 
Entrez Gene cytogenetic band: 20q13.2 Ensembl cytogenetic band: 20q13.13 HGNC cytogenetic band: 20q13.2KCNB1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 20 GeneLoc Exon Structure GeneLoc location for GC20M047421:
(about GC identifiers)
Start:
|
47,421,912 bp from pter |
End:
|
47,532,588 bp from pter |
Size:
|
110,677 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000020.9 NT_011362.9
| Proteins for KCNB1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: KCNB1_HUMAN, Q14721 (See
protein sequence)Recommended Name: Potassium voltage-gated channel subfamily B member 1 Size: 858 amino acids; 95878 Da
Subunit: Heteromultimer with KCNG2, KCNG3, KCNG4, KCNS1, KCNS2, KCNS3 and KCNV2 (By similarity)
Subcellular location: Membrane; Multi-pass membrane protein
Secondary accessions: Q14193Post-translational modifications:
Highly phosphorylated on serine residues in the C-terminal. Differential phosphorylation on a subset of serines allows graded activity-dependent regulation of channel gating. Phosphorylation on Ser-457, Ser-541, Ser-567, Ser-607, Ser-656 and Ser-720 as well as the N-terminal Ser-15 are all regulated by calcineurin-mediated dephosphorylation. Particularly, Ser-607 and Tyr-128 are significant sites of voltage-gated regulation through phosphorylation/ dephosphorylation activities. Tyr-128 can be dephosphorylated by PTPalpha and cyt-PTPepsilon. Phosphorylation levels on Ser-607 are supersensitive to neuronal activity. Phosphorylation on Ser-567 is reduced during postnatal development with low levels at P2 and P5. Levels then increase to reach adult levels by P14. Phosphorylation levels on Ser-564 and Ser-607 are greatly reduced during seizures, by 40% and 85% respectively (By similarity)1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_004966.1
ENSEMBL proteins: ENSP00000360806
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0008076 | voltage-gated potassium channel complex |
IEA | -- | | GO:0016020 | membrane |
IEA | -- | | GO:0016021 | integral to membrane |
IEA | -- | About this table
Antibodies for KCNB1: Assays for KCNB1: | Protein
Domains/ Families for KCNB1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q14721
ProtoNet protein and cluster: Q14721 3 Blocks protein families: IPB000210 BTB/POZ domain IPB003091 Potassium channel signature IPB004350 Kv2.1 voltage-gated K+ channel signature
UniProtKB/Swiss-Prot: KCNB1_HUMAN, Q14721Domain: The segment S4 is probably the voltage-sensor and is characterized by a series of positively charged amino acids at every third positionDomain: The tail may be important in modulation of channel activity and/or targeting of the channel to specific subcellular compartmentsSimilarity: Belongs to the potassium channel family. B (Shab) subfamily | Gene Function for KCNB1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004975
Applied Biosystems Silencer® siRNAs for KCNB1
Sigma-Aldrich siRNA and siRNA Panels for KCNB1  Sigma-Aldrich shRNA Panels and shRNA for KCNB1  Explore Sigma-Aldrich super-pooled esiRNAs 
| Clones: |  | Invitrogen Clones for KCNB1 | |  | Millipore Clones for the Expression of KCNB1 |               OriGene GFP tagged cDNA clone in CMV expression vector: NM_004975                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004975                                  untagged cDNA clone in CMV expression vector: NM_004975 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004975
UniProtKB/Swiss-Prot: KCNB1_HUMAN, Q14721Function: Mediates the voltage-dependent potassium ion permeability of excitable membranes. Channels open or close in response to the voltage difference across the membrane, letting potassium ions pass in accordance with their electrochemical gradientGenatlas biochemistry entry for KCNB1:potassium voltage-gated channel,Drosophila Shab-related subfamily3 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Kcnb1):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for KCNB1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for KCNB1 
5/23 Interacting proteins for KCNB1 (ENSP000003608063) via UniProtKB, MINT, and/or STRING (see all 23
)About this table
2 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006811 | ion transport |
IEA | -- | | GO:0006813 | potassium ion transport |
IEA | -- | About this table
|
Drugs & Compounds for KCNB1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for KCNB1 |
 | Sigma-Aldrich Small Molecules for KCNB1: Inhibitor |
Compounds for KCNB1 available from Tocris Bioscience About this table
2 Novoseek chemical compound relationships for KCNB1 gene
About this table
|
Transcripts for KCNB1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004975
Sigma-Aldrich siRNA and siRNA Panels for KCNB1  Sigma-Aldrich shRNA Panels and shRNA for KCNB1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_004975 REFSEQ mRNAs for KCNB1 gene: NM_004975.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004975               OriGene GFP tagged cDNA clone in CMV expression vector: NM_004975                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004975                                  untagged cDNA clone in CMV expression vector: NM_004975  Additional cDNA sequence: AF026005.1 BC110572.1 BC110573.1 BC127120.1 L02840.1 2 DOTS entries: DT.113446 DT.95362628 24/86 AceView cDNA sequences (see all 86
):BM675921 BU729580 BM702620 BM716727 BM701250 AI627408 BX954191 AA234922 BM725609 BX491423 AA722102 BQ189370 AA584187 NM_004975 BM711704 AI654891 BM703328 AA069770 F01932 F01875 BM678090 BU730308 AA013066 AF026005
highest scoring ESTs for KCNB1:L02840 AA166676 AF026005 BF919072 BF919145 BX955525 AA063012 AA063031 AA069746 AA069770 Unigene Cluster for KCNB1: Potassium voltage-gated channel, Shab-related subfamily, member 1 Hs.84244 [show with all ESTs]Unigene Representative Sequence: L02840
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000371741
|
Expression for KCNB1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| KCNB1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for KCNB1
1 / 2 / 3 3 probe-sets matching KCNB1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: AACTCAGAGC
SOURCE GeneReport for Unigene cluster: Hs.84244
Expression variation in blood from EXPOLDB for KCNB1 |
Orthologs for KCNB1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for KCNB1 gene from 5/11 species (see all 11
)
| Organism |
Gene |
Locus |
Description |
Human Similarity |
NCBI accessions |
dog (Canis familiaris) |
KCNB11 |
-- |
potassium voltage-gated channel, Shab-related subfamily, more |
93.32(n) 97.44(a) |
485918 XM_543042.2 XP_543042.2 |
chimpanzee (Pan troglodytes) |
KCNB11 |
-- |
potassium voltage-gated channel, Shab-related subfamily, more |
99.73(n) 100(a) |
469965 XM_525349.2 XP_525349.2 |
cow (Bos taurus) |
KCNB11 |
-- |
potassium voltage-gated channel, Shab-related subfamily, more |
91.96(n) 96.39(a) |
539528 XM_587915.3 XP_587915.3 |
rat (Rattus norvegicus) |
Kcnb11 |
-- |
potassium voltage gated channel, Shab-related subfamily, more |
86.91(n) 94.14(a) |
25736 NM_013186.1 NP_037318.1 |
mouse (Mus musculus) |
Kcnb11, 5 |
2 (97.00 cM)5
|
potassium voltage gated channel, Shab-related subfamily, more1, 5 |
86.62(n)1 93.82(a)1 |
165001 NM_008420.31 NP_032446.21 AL5917115 AL5918545 (see all 15) |
About this table Species with no ortholog for KCNB1
ENSEMBL Gene Tree for KCNB1 | Paralogs for KCNB1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for KCNB1 gene
- KCNB22 KCNV12
|
SNPs/Variants for KCNB1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for KCNB1 (up to first 250kb)
|
Disorders & Mutations for KCNB1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 600397
Genetic Association Database: KCNB1 Human Genome Epidemiology Navigator: KCNB1 (2 documents)
|
Medical News for KCNB1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for KCNB1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/55 PubMed articles for KCNB1 gene (see all 55
): |
Search for KCNB1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing KCNB1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing KCNB1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing KCNB1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for KCNB1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for KCNB1:

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 | | | | |
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 |  |  |
| | | | Tocris compounds for KCNB1 |
|
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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