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Aliases & Descriptions for KCNAB2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases AKR6A5 1 , 2 HKvbeta2 2 , 3 HKvbeta2.1 1 , 2 HKvbeta2.2 1 , 2 KCNA2B 1 , 2 , 3 , 5 KCNK2 3 KV-BETA-2 2 Kv-beta-2 3 MGC117289 2 OTTHUMP00000000874 2 OTTHUMP00000000875 2 OTTHUMP00000000877 2
Descriptions K(+) channel subunit beta-2 3 K+ channel beta-2 subunit 2 potassium channel shaker chain beta 2 2 potassium voltage-gated channel, shaker-related subfamily, beta member 2 2
Search outside databases for aliases for KCNAB2 genePrevious GC identifers: GC01P005677 GC01P005909 GC01P005795
Summaries for KCNAB2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for KCNAB2 : Voltage-gated potassium (Kv) channels represent the most complex class of voltage-gated ionchannels from both functional and structural standpoints. Their diverse functions includeregulating neurotransmitter release, heart rate, insulin secretion, neuronal excitability,epithelial electrolyte transport, smooth muscle contraction, and cell volume. Foursequence-related potassium channel genes - shaker, shaw, shab, and shal - have been identified inDrosophila, and each has been shown to have human homolog(s). This gene encodes a member of thepotassium channel, voltage-gated, shaker-related subfamily. This member is one of the betasubunits, which are auxiliary proteins associating with functional Kv-alpha subunits. This memberalters functional properties of the KCNA4 gene product. Alternative splicing of this gene resultsin two transcript variants encoding distinct isoforms. [provided by RefSeq] UniProtKB/Swiss-Prot: KCAB2_HUMAN, Q13303 Function : Accessory potassium channel protein which modulates the activity of the pore-formingalpha subunit. Alters functional properties of Kv1.4
Gene Wiki entry for KCNAB2
Genomic Location for KCNAB2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the KCNAB2 gene Entrez Gene cytogenetic band: 1p36.3 Ensembl cytogenetic band: 1p36.31 HGNC cytogenetic band: 1p36.3 KCNAB2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01P006020:
(about GC identifiers )
Start:
5,974,113 bp from pter
End:
6,083,840 bp from pter
Size:
109,728 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000001.9 NT_021937.18 Proteins for KCNAB2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: KCAB2_HUMAN, Q13303 (See
protein sequence )Recommended Name: Voltage-gated potassium channel subunit beta-2 Size : 367 amino acids; 41000 Da
Subunit : Forms heteromultimeric complex with alpha subunits. Forms a ternary complex with SQSTM1and PRKCZ (By similarity)
Subcellular location : Cytoplasm (Potential)
PDB structures from and Proteopedia : 1ZSX (3D)
 
Secondary accessions : A0AVM9 O43659 Q5TG82 Q5TG83 Q99411Alternative splicing : 2 isoforms : Q13303-1 Q13303-2
Post-translational modifications:
Phosphorylated by PRKCZ; may be regulated by incorporation in a complex composed of PRKCZ andSQSTM1 (By similarity)1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_003627.1 NP_742128.1 ENSEMBL proteins: ENSP00000367323 ENSP00000164247 ENSP00000367332 ENSP00000367337 ENSP00000340824 ENSP00000367351 ENSP00000318772 ENSP00000367327 Human Recombinant Proteins                OriGene Purified Recombinant Human Proteins (see all 2 ): KCNAB2 2 Gene Ontology (GO) cellular component terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005737 cytoplasm
IEA -- GO:0016021 integral to membrane
IEA --
About this table Antibodies for KCNAB2: Assays for KCNAB2:
Protein
Domains/ Families for KCNAB2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q13303 ProtoNet protein and cluster: Q13303
3 Blocks protein families : IPB001395 Aldo/keto reductase IPB005399 KCNAB voltage-gated K+ channel beta subunit family signature IPB005401 KCNAB voltage-gated K+ channel beta-2 subunit signature UniProtKB/Swiss-Prot: KCAB2_HUMAN, Q13303 Domain : Alteration of functional properties of alpha subunit is mediated through N-terminal domainof beta subunit (Probable) Similarity : Belongs to the shaker potassium channel beta subunit family
Gene Function for KCNAB2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_003636 Applied Biosystems Silencer ® siRNAs for KCNAB2 Sigma-Aldrich siRNA and siRNA Panels for KCNAB2 Sigma-Aldrich shRNA Panels and shRNA for KCNAB2 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_003636                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_003636                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_003636  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003636 UniProtKB/Swiss-Prot: KCAB2_HUMAN, Q13303 Function : Accessory potassium channel protein which modulates the activity of the pore-formingalpha subunit. Alters functional properties of Kv1.4
Genatlas biochemistry entry for KCNAB2 :potassium voltage-gated channel,Drosophila shaker-related subfamily,mainly expressed in thebrain,auxiliary beta 2 cytoplasmic peptide,co assembly in the endoplasmic reticulum with thechannel forming alpha subunits,modulating the amplitude of K+ currents
6 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Kcnab2) :5 Gene Ontology (GO) molecular function terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005244 voltage-gated ion channel activity
IEA -- GO:0005249 voltage-gated potassium channel activity
IEA -- GO:0015459 potassium channel regulator activity
TAS 7649300 GO:0016491 oxidoreductase activity
IEA -- GO:0030955 potassium ion binding
IEA --
About this table
Pathways & Interactions for KCNAB2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/21 Interacting proteins for KCNAB2 (ENSP00000367323 3 Q13303 2 ) via UniProtKB, MINT, and/or STRING (see all 21
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for KCNAB2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for KCNAB2
Compounds for KCNAB2 available from Tocris Bioscience About this table
Transcripts for KCNAB2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
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shRNA from
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OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_003636 Sigma-Aldrich siRNA and siRNA Panels for KCNAB2 Sigma-Aldrich shRNA Panels and shRNA for KCNAB2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_003636 NM_172130
REFSEQ mRNAs for KCNAB2 gene (2 alternative transcripts): NM_003636.2 NM_172130.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003636 NM_172130
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_003636                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_003636                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_003636  
Additional cDNA sequence: AF029749.1 AF044253.1 AK124696.1 AK131252.1 AK289819.1 AK290044.1 AK312395.1 AK312871.1 AK315811.1 AK315858.1 BC110351.1 BC126424.1 BC130413.1 CR542264.1 CR542287.1 CR592084.1 U33429.1
24/26 DOTS entries (see all 26
): DT.95370268 DT.97802184 DT.95219163 DT.101981038 DT.99957606 DT.100779762 DT.100779755 DT.99975570 DT.452418 DT.121349996 DT.99987894 DT.97847082 DT.75103224 DT.121349988 DT.121350005 DT.121350014 DT.121349967 DT.121350015 DT.121350044 DT.121350082 DT.121350086 DT.40274591 DT.75195081 DT.95193951
24/238 AceView cDNA sequences (see all 238
):BU171590 BG060109 BF724574 BQ053241 CB216399 BX644940 BU527642 BQ682316 AI261585 BI907219 BU183035 CR592084 BQ183094 BM925038 BU855894 AI371008 BI752232 BF507857 AL582057 AU143388 BF514486 AI056721 BE676803 BF977313
highest scoring ESTs for KCNAB2 :U33429 AA113961 AA807333 AF044253 AK124696 AK131252 AL048057 AL135276 AL520102 AL568526
Unigene Cluster for KCNAB2: Potassium voltage-gated channel, shaker-related subfamily, beta member 2 Hs.440497 [show with all ESTs ] Unigene Representative Sequence: AK124696 GeneLoc Exon Structure 5/14 Alternative Splicing Database (ASD) splice patterns (SP) for KCNAB2 (see all 14
) ExUns: 1a · 1b ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b · 9c ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15 ^ 16 ^ 17a · 17b ^ 18 ^ 19 ^ SP1 :           -   -   -     -     -   -   -   -     -             -     -     SP2 :                           -       -             -         SP3 :     -   -   -   -   -   -     -     -   -   -   -     -             -     -     SP4 :               -     -     -   -   -   -     -                     SP5 :     -   -   -   -   -   -     -   -   -   -   -   -     -                    
ExUns: 20 ^ 21 ^ 22a · 22b · 22c ^ 23 ^ 24 ^ 25a · 25b ^ 26 SP1 :     -                 SP2 :     -                 SP3 :     -                 SP4 :                     SP5 :                    
About this scheme ECgene alternative splicing isoforms for KCNAB2 8 Ensembl transcripts including schematic representations : ENST00000378083
ENST00000164247
ENST00000378092
ENST00000378097
ENST00000341524
ENST00000378111
ENST00000352527
ENST00000378087
Expression for KCNAB2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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KCNAB2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for KCNAB2 1 / 2 / 3
6 probe-sets matching KCNAB2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TAAATAATGTSOURCE GeneReport for Unigene cluster: Hs.440497 Expression variation in blood from EXPOLDB for KCNAB2
Orthologs for KCNAB2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for KCNAB2 gene from 5/12 species (see all 12
)
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
KCNAB21
--
potassium voltage-gated channel, shaker-related subfamily, more
92.82(n) 99.43(a)
489626 XM_853201.1 XP_858294.1
chimpanzee (Pan troglodytes)
KCNAB21
--
potassium voltage-gated channel, shaker-related subfamily, more
97.16(n) 98.18(a)
745416 XM_001154295.1 XP_001154295.1
cow (Bos taurus)
KCNAB21
--
potassium voltage-gated channel, shaker-related subfamily, more
92.64(n) 99.46(a)
541597 NM_001014383.1 NP_001014405.1
rat (Rattus norvegicus)
Kcnab21
--
potassium voltage-gated channel, shaker-related subfamily, more
90.92(n) 98.91(a)
29738 NM_017304.1 NP_059000.1
mouse (Mus musculus)
Kcnab21 , 5
4 (78.40 cM) 5
potassium voltage-gated channel, shaker-related subfamily, more 1, 5
90.74(n) 1 98.91(a) 1
16498 1 NM_010598.2 1 NP_034728.2 1 AK143166 5 AK152613 5 (see all 14 )
About this table Species with no ortholog for KCNAB2 ENSEMBL Gene Tree for KCNAB2 Paralogs for KCNAB2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for KCNAB2 gene KCNAB1 2 KCNAB3 2
SNPs/Variants for KCNAB2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for KCNAB2 (up to first 250kb)
Disorders & Mutations for KCNAB2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 601142 Human Gene Mutation Database : KCNAB2
Medical News for KCNAB2 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for KCNAB2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/19 PubMed articles for KCNAB2 gene (see all 19
): Alternative splicing of the human Shaker K+ channel beta 1 gene and functional expression of the beta 2 gene product. (PubMed id 7649300) 1, 3, 4 Mccormack K.... Stuehmer W. (1995) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 3, 4 Gregory S.G.... Bentley D.R. (2006) Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. (PubMed id 15592455) 3, 4 Rush J.... Comb M.J. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Localization of two potassium channel beta subunit genes, KCNA1B and KCNA2B. (PubMed id 8838324) 2, 3 Schultz D....McCormack K. (1996) A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration. (PubMed id 16713569) 3 Lim J....Zoghbi H.Y. (2006) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3 Ota T....Sugano S. (2004) ZIP3, a new splice variant of the PKC-zeta-interacting protein family, binds to GABAC receptors, PKC-zeta, and Kv beta 2. (PubMed id 12431995) 3 Croci C....Enz R. (2003) A conserved domain in axonal targeting of Kv1 (Shaker) voltage-gated potassium channels. (PubMed id 12893943) 3 Gu C....Jan L.Y. (2003) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 3 Strausberg R.L....Marra M.A. (2002)
Search for KCNAB2
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Genome Databases showing KCNAB2
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing KCNAB2
(According to HUGE )
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--
Specialized Databases showing KCNAB2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for KCNAB2 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for KCNAB2:
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Aliases for KCNAB2
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Expression for KCNAB2
Function for KCNAB2
Location for KCNAB2
Medical News for KCNAB2
Orthologs for KCNAB2
Paralogs for KCNAB2
Pathways/Interactions for KCNAB2
Proteins for KCNAB2
Publications for KCNAB2
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Search Box for KCNAB2
Services for KCNAB2
Summaries for KCNAB2
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009