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Aliases & Descriptions for KCNAB1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases AKR6A3 1 , 2 KCNA1B 1 , 2 , 3 , 5 KV-BETA-1 2 Kv-beta-1 3 Kvb1.3 1 , 2 hKvBeta3 1 , 2 hKvb3 1 , 2
Descriptions K(+) channel subunit beta-1 3 potassium channel beta 3 chain 2 potassium channel beta3 subunit 2 potassium channel shaker chain beta 1a 2 potassium voltage-gated channel beta subunit 2 potassium voltage-gated channel, shaker-related subfamily, beta member 1 2 voltage-gated potassium channel beta-1 subunit 2
Search outside databases for aliases for KCNAB1 genePrevious GC identifers: GC03P152874 GC03P156956 GC03P157119 GC03P157159
Summaries for KCNAB1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for KCNAB1 : Potassium channels represent the most complex class of voltage-gated ion channels from bothfunctional and structural standpoints. Their diverse functions include regulating neurotransmitterrelease, heart rate, insulin secretion, neuronal excitability, epithelial electrolyte transport,smooth muscle contraction, and cell volume. Four sequence-related potassium channel genes -shaker, shaw, shab, and shal - have been identified in Drosophila, and each has been shown to havehuman homolog(s). This gene encodes a member of the potassium channel, voltage-gated,shaker-related subfamily. This member includes three distinct isoforms which are encoded by threealternatively spliced transcript variants of this gene. These three isoforms are beta subunits,which form heteromultimeric complex with alpha subunits and modulate the activity of thepore-forming alpha subunits. [provided by RefSeq] UniProtKB/Swiss-Prot: KCAB1_HUMAN, Q14722 Function : Accessory potassium channel protein which modulates the activity of the pore-formingalpha subunit. All three isoforms alter the functional properties of Kv1.4 and Kv1.5. IsoformKvB1.2 has no effect on Kv1.1, Kv1.2 or Kv2.1
Gene Wiki entry for KCNAB1
Genomic Location for KCNAB1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the KCNAB1 gene Entrez Gene cytogenetic band: 3q26.1 Ensembl cytogenetic band: 3q25.31 HGNC cytogenetic band: 3q26.1 KCNAB1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure
GeneLoc location for GC03P157321:
(about GC identifiers )
Start:
157,321,031 bp from pter
End:
157,739,621 bp from pter
Size:
418,591 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000003.10 NT_005612.15 Proteins for KCNAB1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: KCAB1_HUMAN, Q14722 (See
protein sequence )Recommended Name: Voltage-gated potassium channel subunit beta-1 Size : 419 amino acids; 46563 Da
Subunit : Forms heteromultimeric complex with alpha subunits. Interacts with SQSTM1 (By similarity)
Subcellular location : Cytoplasm (Potential)
Secondary accessions : Q13031 Q13302 Q16547 Q6PI60 Q99869Alternative splicing : 3 isoforms : Q14722-1 Q14722-2 Q14722-3
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_003462.2 NP_751891.1 NP_751892.1 ENSEMBL proteins: ENSP00000374287 ENSP00000374285 ENSP00000305858 ENSP00000317378 ENSP00000374283 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: KCNAB1 2 Gene Ontology (GO) cellular component terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005737 cytoplasm
IEA -- GO:0016021 integral to membrane
IEA --
About this table Antibodies for KCNAB1: Assays for KCNAB1:
Protein
Domains/ Families for KCNAB1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q14722 ProtoNet protein and cluster: Q14722
3 Blocks protein families : IPB001395 Aldo/keto reductase IPB005399 KCNAB voltage-gated K+ channel beta subunit family signature IPB005400 KCNAB voltage-gated K+ channel beta-1 subunit signature UniProtKB/Swiss-Prot: KCAB1_HUMAN, Q14722 Domain : Alteration of functional properties of alpha subunit is mediated through N-terminal domainof beta subunit (Probable) Similarity : Belongs to the shaker potassium channel beta subunit family
Gene Function for KCNAB1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_172159 Applied Biosystems Silencer ® siRNAs for KCNAB1 Sigma-Aldrich siRNA and siRNA Panels for KCNAB1 Sigma-Aldrich shRNA Panels and shRNA for KCNAB1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_003471                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_003471                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_003471  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_172160 UniProtKB/Swiss-Prot: KCAB1_HUMAN, Q14722 Function : Accessory potassium channel protein which modulates the activity of the pore-formingalpha subunit. All three isoforms alter the functional properties of Kv1.4 and Kv1.5. IsoformKvB1.2 has no effect on Kv1.1, Kv1.2 or Kv2.1
Genatlas biochemistry entry for KCNAB1 :potassium voltage-gated channel,Drosophila shaker-related subfamily,expressed in heart,auxiliarybeta 1cytoplasmic peptide,,co assembly in the endoplasmic reticulum with the channel forming alphasubunits,modulating the amplitude of K+ currents
4 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Kcnab1) :5 Gene Ontology (GO) molecular function terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005244 voltage-gated ion channel activity
IEA -- GO:0005249 voltage-gated potassium channel activity
IEA -- GO:0015459 potassium channel regulator activity
TAS 7499366 GO:0016491 oxidoreductase activity
IEA -- GO:0030955 potassium ion binding
IEA --
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Pathways & Interactions for KCNAB1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/16 Interacting proteins for KCNAB1 (ENSP00000305858 3 ) via UniProtKB, MINT, and/or STRING (see all 16
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for KCNAB1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for KCNAB1
Compounds for KCNAB1 available from Tocris Bioscience About this table 1 Novoseek chemical compound relationship for KCNAB1 gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
potassium
47.24
1
8938711 (1)
About this table 1 PharmGKB drug compound relationship for KCNAB1 gene
Drug compound
PharmGKB Relations
PubMed IDs for articles supporting these relationships
antiarrhythmics FA  GN  7603988
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Transcripts for KCNAB1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_172159 Sigma-Aldrich siRNA and siRNA Panels for KCNAB1 Sigma-Aldrich shRNA Panels and shRNA for KCNAB1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_003471 NM_172159 NM_172160
REFSEQ mRNAs for KCNAB1 gene (3 alternative transcripts): NM_003471.3 NM_172159.3 NM_172160.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003471 NM_172159 NM_172160
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_003471                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_003471                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_003471  
Additional cDNA sequence: AK057059.1 AK127240.1 AK292693.1 AK292999.1 AK296728.1 AK303287.1 AY780786.1 BC043166.2 CR605930.1 L39833.1 L47665.1 U16953.1 U17968.1 U33428.1
9 DOTS entries : DT.414830 DT.100678459 DT.100743432 DT.95160478 DT.70105431 DT.97819777 DT.95251606 DT.120847313 DT.91867056
17 AceView cDNA sequences :AI344124 AA101811 AI421570 AA307631 BU071950 AV690748 AI225105 CA433063 AW026476 BG927156 AI361306 CD695905 AI991486 BX106158 BF696512 AA101809 AV700268
highest scoring ESTs for KCNAB1 :L39833 AA013094 AA013095 AA301634 AA642687 AI090942 AI344124 AI361306 AI420137 AI421570
Unigene Cluster for KCNAB1: Potassium voltage-gated channel, shaker-related subfamily, beta member 1 Hs.654519 [show with all ESTs ] Unigene Representative Sequence: NM_172159 GeneLoc Exon Structure 5 Ensembl transcripts including schematic representations : ENST00000389636
ENST00000389634
ENST00000302490
ENST00000320719
ENST00000389632
Expression for KCNAB1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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KCNAB1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for KCNAB1 1 / 2 / 3
11 probe-sets matching KCNAB1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: ACAGATTCGCSOURCE GeneReport for Unigene cluster: Hs.654519 Expression variation in blood from EXPOLDB for KCNAB1
UniProtKB/Swiss-Prot: KCAB1_HUMAN, Q14722 Tissue specificity : In brain, expression is most prominent in caudate nucleus, hippocampus andthalamus. Significant expression also detected in amygdala and subthalamic nucleus. Also expressedin both healthy and cardiomyopathic heart. Up to four times more abundant in left ventricle thanleft atrium
Orthologs for KCNAB1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for KCNAB1 gene from 5/16 species (see all 16
)
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
KCNAB11
--
potassium voltage-gated channel, shaker-related subfamily, more
92.1(n) 99(a)
612006 XM_849730.1 XP_854823.1
chimpanzee (Pan troglodytes)
KCNAB11
--
potassium voltage-gated channel, shaker-related subfamily, more
96.06(n) 95.73(a)
740565 XM_001150240.1 XP_001150240.1
cow (Bos taurus)
KCNAB11
--
potassium voltage-gated channel, shaker-related subfamily, more
93.68(n) 100(a)
526133 NM_001025336.1 NP_001020507.1
rat (Rattus norvegicus)
Kcnab11
--
potassium voltage-gated channel, shaker-related subfamily, more
92.52(n) 100(a)
29737 NM_017303.2 NP_058999.1
mouse (Mus musculus)
Kcnab11 , 5
3 (32.00 cM) 5
potassium voltage-gated channel, shaker-related subfamily, more 1, 5
92.6(n) 1 99.75(a) 1
16497 1 NM_010597.2 1 NP_034727.2 1 AF033003 5 AK004666 5 (see all 12 )
About this table Species with no ortholog for KCNAB1 ENSEMBL Gene Tree for KCNAB1 Paralogs for KCNAB1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for KCNAB1 gene KCNAB3 2 KCNAB2 2
SNPs/Variants for KCNAB1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for KCNAB1 (up to first 250kb)
Disorders & Mutations for KCNAB1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 601141 Human Genome Epidemiology Navigator: KCNAB1 (1 document)
Medical News for KCNAB1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for KCNAB1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/22 PubMed articles for KCNAB1 gene (see all 22
): Characterization of a voltage-gated K+ channel beta subunit expressed in human heart. (PubMed id 7603988) 3, 4, 7 England S.K....Tamkun M.M. (1995) A novel K+ channel beta-subunit (hKv beta 1.3) is produced via alternative mRNA splicing. (PubMed id 7499366) 2, 3, 4 England S.K....Tamkun M.M. (1995) Structural and functional characterization of human potassium channel subunit beta 1 (KCNA1B). (PubMed id 8938711) 1, 3, 4 Leicher T.... Pongs O. (1996) Alternative splicing of the human Shaker K+ channel beta 1 gene and functional expression of the beta 2 gene product. (PubMed id 7649300) 1, 3, 4 Mccormack K.... Stuehmer W. (1995) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Localization of two potassium channel beta subunit genes, KCNA1B and KCNA2B. (PubMed id 8838324) 2, 3 Schultz D....McCormack K. (1996) Molecular cloning and functional expression of a novel potassium channel beta-subunit from human atrium. (PubMed id 7890032) 3, 4 Majumder K.... Wible B.A. (1995) A novel beta subunit increases rate of inactivation of specific voltage-gated potassium channel alpha subunits. (PubMed id 7890764) 3, 4 Morales M.J....Strauss H.C. (1995) Coexpression of the KCNA3B gene product with Kv1.5 leads to a novel A-type potassium channel. (PubMed id 9857044) 1, 3 Leicher T.... Pongs O. (1998) Structural determinants of Kvbeta1.3-induced channel inactivation: a hairpin modulated by PIP2. (PubMed id 18987637) 3 Decher N....Sanguinetti M.C. (2008)
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Genome Databases showing KCNAB1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing KCNAB1
(According to HUGE )
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--
Specialized Databases showing KCNAB1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for KCNAB1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for KCNAB1:
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Expression for KCNAB1
Function for KCNAB1
Location for KCNAB1
Medical News for KCNAB1
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009