KCNA4 Gene
protein-coding GIFtS : 63
GC11M029988
potassium voltage-gated channel, shaker-related subfamily, member 4 (Previous names: potassium voltage-gated channel, shaker-related subfamily, member 4-like )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: KCNA4L )
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Aliases & Descriptions for KCNA4
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases HBK4 2 , 3 HK1 1 , 2 , 3 HPCN2 1 , 2 , 3 HUKII 2 , 3 KCNA4L 2 , 3 KCNA8 2 , 5 KV1.4 2 Kv1.4 1 PCN2 2
Descriptions Voltage-gated potassium channel subunit Kv1.4 3 cardiac potassium channel 2 fetal skeletal muscle potassium channel 2 potassium channel 2 2 potassium voltage-gated channel, shaker-related subfamily, member 4 2 potassium voltage-gated channel, shaker-related subfamily, member 4-like 1 , 2 rapidly inactivating potassium channel 2 shaker-related potassium channel Kv1.4 2 type A potassium channel 2
Search outside databases for aliases for KCNA4 genePrevious GC identifers: GC11M031625 GC11M030806 GC11M030070 GC11M029996
Summaries for KCNA4 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for KCNA4 : Potassium channels represent the most complex class of voltage-gated ion channels from bothfunctional and structural standpoints. Their diverse functions include regulating neurotransmitterrelease, heart rate, insulin secretion, neuronal excitability, epithelial electrolyte transport,smooth muscle contraction, and cell volume. Four sequence-related potassium channel genes -shaker, shaw, shab, and shal - have been identified in Drosophila, and each has been shown to havehuman homolog(s). This gene encodes a member of the potassium channel, voltage-gated,shaker-related subfamily. This member contains six membrane-spanning domains with a shaker-typerepeat in the fourth segment. It belongs to the A-type potassium current class, the members ofwhich may be important in the regulation of the fast repolarizing phase of action potentials inheart and thus may influnce the duration of cardiac action potential. The coding region of thisgene is intronless, and the gene is clustered with genes KCNA3 and KCNA10 on chromosome 1.[provided by RefSeq] UniProtKB/Swiss-Prot: KCNA4_HUMAN, P22459 Function : Mediates the voltage-dependent potassium ion permeability of excitable membranes.Assuming opened or closed conformations in response to the voltage difference across the membrane,the protein forms a potassium-selective channel through which potassium ions may pass inaccordance with their electrochemical gradient
Gene Wiki entry for KCNA4
Genomic Location for KCNA4
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the KCNA4 gene Entrez Gene cytogenetic band: 11p14 Ensembl cytogenetic band: 11p14.1 HGNC cytogenetic band: 11p14 KCNA4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11M029988:
(about GC identifiers )
Start:
29,988,341 bp from pter
End:
29,995,064 bp from pter
Size:
6,724 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000011.8 NT_009237.17 Proteins for KCNA4
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: KCNA4_HUMAN, P22459 (See
protein sequence )Recommended Name: Potassium voltage-gated channel subfamily A member 4 Size : 653 amino acids; 73288 Da
Subunit : Heterotetramer of potassium channel proteins. Binds PDZ domains of DLG1, DLG2 and DLG4.Interacts with OPRS1 (By similarity)
Subcellular location : Membrane; Multi-pass membrane protein
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_002224.1 ENSEMBL proteins: ENSP00000328511 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for KCNA4: Assays for KCNA4:
Protein
Domains/ Families for KCNA4(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P22459 ProtoNet protein and cluster: P22459
4 Blocks protein families : IPB000210 BTB/POZ domain IPB003091 Potassium channel signature IPB003972 Skaker voltage-gated K+ channel family signature IPB004051 Kv1.4 voltage-gated K+ channel signature UniProtKB/Swiss-Prot: KCNA4_HUMAN, P22459 Domain : The N-terminus may be important in determining the rate of inactivation of the channelwhile the tail may play a role in modulation of channel activity and/or targeting of the channelto specific subcellular compartments Domain : The segment S4 is probably the voltage-sensor and is characterized by a series ofpositively charged amino acids at every third position Similarity : Belongs to the potassium channel family. A (Shaker) subfamily
Gene Function for KCNA4
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002233 Applied Biosystems Silencer ® siRNAs for KCNA4 Sigma-Aldrich siRNA and siRNA Panels for KCNA4 Sigma-Aldrich shRNA Panels and shRNA for KCNA4 Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002233                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002233                                  untagged cDNA clone in CMV expression vector: NM_002233  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002233 UniProtKB/Swiss-Prot: KCNA4_HUMAN, P22459 Function : Mediates the voltage-dependent potassium ion permeability of excitable membranes.Assuming opened or closed conformations in response to the voltage difference across the membrane,the protein forms a potassium-selective channel through which potassium ions may pass inaccordance with their electrochemical gradient
Genatlas biochemistry entry for KCNA4 :potassium voltage-gated channel,Drosophila shaker-related subfamily,member 4 (mouse Kv1.4 homolog)
2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Kcna4) :4 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for KCNA4
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for KCNA4 5/56 Interacting proteins for KCNA4 (ENSP00000328511 3 P22459 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 56
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for KCNA4 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Compounds for KCNA4 available from Tocris Bioscience About this table 3 Novoseek chemical compound relationships for KCNA4 gene
About this table 1 PharmGKB drug compound relationship for KCNA4 gene
Drug compound
PharmGKB Relations
PubMed IDs for articles supporting these relationships
antiarrhythmics FA  GN  2001794
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Transcripts for KCNA4(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002233 Sigma-Aldrich siRNA and siRNA Panels for KCNA4 Sigma-Aldrich shRNA Panels and shRNA for KCNA4 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_002233
REFSEQ mRNAs for KCNA4 gene: NM_002233.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002233
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002233                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002233                                  untagged cDNA clone in CMV expression vector: NM_002233  
Additional cDNA sequence: AK311228.1 AK313662.1 L02751.1 M55514.1 M60450.1
2 DOTS entries : DT.306585 DT.120687017
20 AceView cDNA sequences :NM_002233 CF143509 BF196130 BF223341 L02751 BE467209 M60450 BX282390 AI631014 AI694934 BE467430 AI733207 AA974913 M55514 AI793138 AW275993 BE326268 BF111147 BX952248 AI701825
highest scoring ESTs for KCNA4 :M55514 AI694934 BF196130 BX952248 AI631014 AI701825 AI733207 AI793138 AW275993 BE326268
Unigene Cluster for KCNA4: Potassium voltage-gated channel, shaker-related subfamily, member 4 Hs.592002 [show with all ESTs ] Unigene Representative Sequence: NM_002233 GeneLoc Exon Structure 1 Ensembl transcript including schematic representation : ENST00000328224
Expression for KCNA4
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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KCNA4 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for KCNA4 1 / 2 / 3
3 probe-sets matching KCNA4 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GCATAATTGTSOURCE GeneReport for Unigene cluster: Hs.592002 Expression variation in blood from EXPOLDB for KCNA4
Orthologs for KCNA4
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for KCNA4 gene from 5/10 species (see all 10
)
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
KCNA41
--
potassium voltage-gated channel, shaker-related subfamily, more
83.31(n) 89.71(a)
485427 XM_542545.2 XP_542545.2
chimpanzee (Pan troglodytes)
KCNA41
--
potassium voltage-gated channel, shaker-related subfamily, more
99.85(n) 100(a)
466477 XM_521876.2 XP_521876.2
cow (Bos taurus)
KCNA41
--
potassium voltage-gated channel, shaker-related subfamily, more
89.83(n) 96.47(a)
281880 NM_174371.2 NP_776796.1
rat (Rattus norvegicus)
Kcna41
--
potassium voltage-gated channel, shaker-related subfamily, more
90.61(n) 97.24(a)
25469 NM_012971.1 NP_037103.1
mouse (Mus musculus)
Kcna41 , 5
2 (61.00 cM) 5
potassium voltage-gated channel, shaker-related subfamily, more 1, 5
91.07(n) 1 97.4(a) 1
16492 1 NM_021275.3 1 NP_067250.2 1 AK036112 5 BC109014 5 (see all 8 )
About this table Species with no ortholog for KCNA4 ENSEMBL Gene Tree for KCNA4 Paralogs for KCNA4 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for KCNA4 gene KCNA5 2 KCNA10 2
SNPs/Variants for KCNA4 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for KCNA4 (up to first 250kb)
Disorders & Mutations for KCNA4
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 176266 1 Novoseek disease relationship for KCNA4 gene
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Medical News for KCNA4 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for KCNA4 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/87 PubMed articles for KCNA4 gene (see all 87
): Molecular cloning and characterization of two voltage-gated K+ channel cDNAs from human ventricle. (PubMed id 2001794) 3, 4, 7 Tamkun M.M....Glover D.M. (1991) Sequence of a human fetal skeletal muscle potassium channel cDNA related to RCK4. (PubMed id 2263489) 2, 3, 4 Philipson L.H.... Steiner D.F. (1990) International Union of Pharmacology. LIII. Nomenclature and molecular relationships of voltage-gated potassium channels. (PubMed id 16382104) 2, 3 Gutman G.A....Wang X. (2005) Sequence and functional expression in Xenopus oocytes of a human insulinoma and islet potassium channel. (PubMed id 1986382) 3, 4 Philipson L.H.... Steiner D.F. (1991) Assignment of human potassium channel gene KCNA4 (Kv1.4, PCN2) to chromosome 11q13.4-->q14.1. (PubMed id 8449523) 1, 3 Philipson L.H....Bell G.I. (1993) Ligand binding of the second PDZ domain regulates clustering of PSD-95 with the Kv1.4 potassium channel. (PubMed id 11723117) 1, 3 Imamura F....Fujiyoshi Y. (2002) The potassium channel gene HK1 maps to human chromosome 11p14.1, close to the FSHB gene. (PubMed id 1487251) 1, 3 Gessler M....Pongs O. (1992) Chromosomal mapping in the mouse of eight K(+)-channel genes representing the four Shaker-like subfamilies Shaker, Shab, Shaw, and Shal. (PubMed id 7905852) 1, 3 Klocke R....Jockusch H. (1993) Identification of an evolutionarily conserved extracellular threonine residue critical for surface expression and its potential coupling of adjacent voltage-sensing and gating domains in voltage-gated potassium channels. (PubMed id 18640987) 3 Mckeown L....Jones O.T. (2008) Ginsenoside Rg3 inhibits human Kv1.4 channel currents by interacting with the Lys531 residue. (PubMed id 17959711) 3 Lee J.H....Nah S.Y. (2008)
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Genome Databases showing KCNA4
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing KCNA4
(According to HUGE )
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--
Specialized Databases showing KCNA4 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for KCNA4 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for KCNA4:
Tocris compounds for KCNA4
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