Free for academic non-profit institutions. Other users need a Commercial license

Aliases for KC6 Gene

Subcategory (RNA class) for KC6 Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for KC6 Gene

  • Keratoconus Gene 6 3

External Ids for KC6 Gene

ORGUL Members for KC6 Gene

Summaries for KC6 Gene

GeneCards Summary for KC6 Gene

KC6 (Keratoconus Gene 6) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KC6 Gene

Genomics for KC6 Gene

Genomic Location for KC6 Gene

Start:
41,465,783 bp from pter
End:
41,632,185 bp from pter
Size:
166,403 bases
Orientation:
Minus strand

Genomic View for KC6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for KC6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KC6 Gene

Regulatory Elements for KC6 Gene

Proteins for KC6 Gene

Post-translational modifications for KC6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KC6 Gene

Domains for KC6 Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for KC6 Gene

Function for KC6 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for KC6 Gene

Localization for KC6 Gene

No data available for Gene Ontology (GO) - Cellular Components for KC6 Gene

Pathways for KC6 Gene

SuperPathways for KC6 Gene

No Data Available

Interacting Proteins for KC6 Gene

Gene Ontology (GO) - Biological Process for KC6 Gene

None

No data available for Pathways by source for KC6 Gene

Transcripts for KC6 Gene

mRNA/cDNA for KC6 Gene

(2) Additional mRNA sequences :
(10) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KC6 Gene

Keratoconus gene 6:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for KC6 Gene

No ASD Table

Relevant External Links for KC6 Gene

GeneLoc Exon Structure for
KC6

Expression for KC6 Gene

mRNA expression in normal human tissues for KC6 Gene

mRNA differential expression in normal tissues according to GTEx for KC6 Gene

This gene is overexpressed in Cervix - Ectocervix (5.8) and Vagina (4.8).

SOURCE GeneReport for Unigene cluster for KC6 Gene Hs.116612

genes like me logo Genes that share expressions with KC6: view

Orthologs for KC6 Gene

Evolution for KC6 Gene

ENSEMBL:
Gene Tree for KC6 (if available)
TreeFam:
Gene Tree for KC6 (if available)

No data available for Orthologs for KC6 Gene

Paralogs for KC6 Gene

No data available for Paralogs for KC6 Gene

Variants for KC6 Gene

Sequence variations from dbSNP and Humsavar for KC6 Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type MAF
rs1893398 -- 41,519,877(+) TTTTT(A/T)AACCG intron-variant
rs1942059 -- 41,482,795(+) TACCC(A/G)TGGAT intron-variant
rs1942060 -- 41,485,255(+) GGTCA(G/T)GCAGC intron-variant
rs1942061 -- 41,487,917(+) AATTT(A/C)TGCTC intron-variant
rs1942062 -- 41,499,244(+) TTTTT(C/T)CCACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for KC6 Gene

Variant ID Type Subtype PubMed ID
nsv909564 CNV Gain 21882294
esv2674906 CNV Deletion 23128226
esv1002655 CNV Insertion 20482838
esv1042508 CNV Insertion 17803354
nsv130773 CNV Insertion 16902084

Relevant External Links for KC6 Gene

HapMap Linkage Disequilibrium report
KC6

Disorders for KC6 Gene

Relevant External Links for KC6

Genetic Association Database (GAD)
KC6
genes like me logo Genes that share disorders with KC6: view

No data available for UniProtKB/Swiss-Prot for KC6 Gene

Publications for KC6 Gene

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3
  2. Gene expression profile studies of human keratoconus cornea for NEIBank: a novel cornea-expressed gene and the absence of transcripts for aquaporin 5. (PMID: 15790884) Rabinowitz Y.S. … Wistow G. (Invest. Ophthalmol. Vis. Sci. 2005) 3
  3. A genome-wide association meta-analysis identifies new childhood obesity loci. (PMID: 22484627) Bradfield J.P. … Grant S.F. (Nat. Genet. 2012) 3
  4. Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study. (PMID: 23934736) Yu B. … Boerwinkle E. (Genet. Epidemiol. 2013) 3
  5. Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations. (PMID: 24529757) Xie T. … Xu R. (Neurobiol. Aging 2014) 3

Products for KC6 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate KC6
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for KC6
    • Block miRNA regulation of KC6 using miScript Target Protectors

    Sources for KC6 Gene

    Back to Top

    Content