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Aliases for KATNBL1P6 Gene

Subcategory (RNA class) for KATNBL1P6 Gene

antisense

Aliases for KATNBL1P6 Gene

  • Katanin Regulatory Subunit B1 Like 1 Pseudogene 6 2 3 5
  • Katanin P80 Subunit B-Like 1 Pseudogene 6 2

External Ids for KATNBL1P6 Gene

ORGUL Members for KATNBL1P6 Gene

Previous GeneCards Identifiers for KATNBL1P6 Gene

  • GC06M147125

Summaries for KATNBL1P6 Gene

GeneCards Summary for KATNBL1P6 Gene

KATNBL1P6 (Katanin Regulatory Subunit B1 Like 1 Pseudogene 6) is a Pseudogene, and is affiliated with the antisense RNA class.

fRNAdb sequence ontologies for KATNBL1P6 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for KATNBL1P6

Additional gene information for KATNBL1P6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for KATNBL1P6 Gene

Genomics for KATNBL1P6 Gene

Regulatory Elements for KATNBL1P6 Gene

Enhancers for KATNBL1P6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H146891 1.5 Ensembl ENCODE dbSUPER 12.5 -88.4 -88444 2 HDGF PKNOX1 ATF1 ARNT ZNF766 GATA2 ELK1 FOS ATF7 CAVIN1 SHPRH STXBP5-AS1 KATNBL1P6 STXBP5 LOC105378042 ENSG00000272397
GH06H146883 1.5 FANTOM5 ENCODE dbSUPER 12.5 -81.1 -81102 2 HDGF PKNOX1 ARNT YY1 ZNF766 GATA2 ATF7 ZNF592 SNIP1 MEF2D KATNBL1P6 SHPRH STXBP5-AS1 STXBP5 LOC105378042 ENSG00000272397
GH06H147201 1.4 ENCODE dbSUPER 12.4 -401.3 -401295 7 HDGF PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF766 ZNF207 KATNBL1P6 STXBP5-AS1 GC06M147362
GH06H147159 1 FANTOM5 12.4 -356.2 -356158 0 HDAC1 TBP HDGF PKNOX1 ATF1 ARNT NFRKB CHAMP1 TCF12 ZNF766 KATNBL1P6 LUADT1 STXBP5
GH06H146815 0.7 ENCODE 0.4 -12.3 -12321 0 HDAC1 TAL1 TCF12 CTBP1 NCOR1 SCRT2 TRIM24 SMARCE1 MTA2 L3MBTL2 ADGB STXBP5-AS1 KATNBL1P6 LOC105378042
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KATNBL1P6 on UCSC Golden Path with GeneCards custom track

Genomic Location for KATNBL1P6 Gene

Chromosome:
6
Start:
146,801,669 bp from pter
End:
146,803,824 bp from pter
Size:
2,156 bases
Orientation:
Minus strand

Genomic View for KATNBL1P6 Gene

Genes around KATNBL1P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KATNBL1P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KATNBL1P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KATNBL1P6 Gene

ORGUL Member Location for KATNBL1P6 Gene

ORGUL Member Location for KATNBL1P6 gene

Proteins for KATNBL1P6 Gene

Post-translational modifications for KATNBL1P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KATNBL1P6 Gene

Domains & Families for KATNBL1P6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KATNBL1P6 Gene

Function for KATNBL1P6 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KATNBL1P6 Gene

Localization for KATNBL1P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KATNBL1P6 Gene

Pathways & Interactions for KATNBL1P6 Gene

SuperPathways for KATNBL1P6 Gene

No Data Available

Interacting Proteins for KATNBL1P6 Gene

Gene Ontology (GO) - Biological Process for KATNBL1P6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KATNBL1P6 Gene

Drugs & Compounds for KATNBL1P6 Gene

No Compound Related Data Available

Transcripts for KATNBL1P6 Gene

fRNAdb Secondary structures for KATNBL1P6 Gene

  • FR217614

mRNA/cDNA for KATNBL1P6 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for KATNBL1P6 Gene

No ASD Table

Relevant External Links for KATNBL1P6 Gene

GeneLoc Exon Structure for
KATNBL1P6
ECgene alternative splicing isoforms for
KATNBL1P6

Expression for KATNBL1P6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KATNBL1P6 Gene

NURSA nuclear receptor signaling pathways regulating expression of KATNBL1P6 Gene:

KATNBL1P6
genes like me logo Genes that share expression patterns with KATNBL1P6: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KATNBL1P6 Gene

Orthologs for KATNBL1P6 Gene

Evolution for KATNBL1P6 Gene

ENSEMBL:
Gene Tree for KATNBL1P6 (if available)
TreeFam:
Gene Tree for KATNBL1P6 (if available)

No data available for Orthologs for KATNBL1P6 Gene

Paralogs for KATNBL1P6 Gene

No data available for Paralogs for KATNBL1P6 Gene

Variants for KATNBL1P6 Gene

Sequence variations from dbSNP and Humsavar for KATNBL1P6 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1002026626 -- 146,803,363(+) TCATG(C/G)TGTAA intron-variant, nc-transcript-variant
rs1002565929 -- 146,803,042(+) TTTAC(A/T)AGAAG intron-variant, nc-transcript-variant
rs1003429163 -- 146,804,786(+) CTAGG(C/T)TTATC intron-variant, upstream-variant-2KB
rs1004666609 -- 146,804,882(+) TTTAT(G/T)TTGCA intron-variant, upstream-variant-2KB
rs1005543138 -- 146,803,474(+) TGGAA(A/G)GGGAT intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for KATNBL1P6 Gene

Variant ID Type Subtype PubMed ID
nsv830838 CNV gain 17160897
nsv981192 CNV duplication 23825009

Relevant External Links for KATNBL1P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KATNBL1P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KATNBL1P6 Gene

Disorders for KATNBL1P6 Gene

Relevant External Links for KATNBL1P6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KATNBL1P6

No disorders were found for KATNBL1P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KATNBL1P6 Gene

Publications for KATNBL1P6 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60
  2. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for KATNBL1P6 Gene

Sources for KATNBL1P6 Gene

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