Free for academic non-profit institutions. Other users need a Commercial license

Aliases for KATNBL1P6 Gene

Subcategory (RNA class) for KATNBL1P6 Gene

antisense

Aliases for KATNBL1P6 Gene

  • Katanin Regulatory Subunit B1 Like 1 Pseudogene 6 2 3 5
  • Katanin P80 Subunit B-Like 1 Pseudogene 6 2

External Ids for KATNBL1P6 Gene

ORGUL Members for KATNBL1P6 Gene

Previous GeneCards Identifiers for KATNBL1P6 Gene

  • GC06M147125

Summaries for KATNBL1P6 Gene

GeneCards Summary for KATNBL1P6 Gene

KATNBL1P6 (Katanin Regulatory Subunit B1 Like 1 Pseudogene 6) is a Pseudogene, and is affiliated with the antisense RNA class.

fRNAdb sequence ontologies for KATNBL1P6 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for KATNBL1P6

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for KATNBL1P6 Gene

Genomics for KATNBL1P6 Gene

Regulatory Elements for KATNBL1P6 Gene

Enhancers for KATNBL1P6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F146812 0.8 ENCODE 0.4 -9.2 -9229 1.6 PKNOX1 ZNF175 CEBPG ZNF316 ZNF366 ADNP NFE2 ZNF584 KLF8 L3MBTL2 ADGB STXBP5-AS1 KATNBL1P6 LOC105378042
GH06F146815 0.7 ENCODE 0.4 -12.3 -12321 1.0 RNF2 MTA2 NR2F1 TAL1 CEBPB ARID1B NCOR1 SCRT2 IKZF1 IRF1 ADGB STXBP5-AS1 KATNBL1P6 LOC105378042
GH06F146808 0.6 ENCODE 0.4 -5.2 -5151 1.3 NCOR1 IKZF1 CEBPB ZBTB33 PRDM1 STXBP5 ADGB STXBP5-AS1 KATNBL1P6 LOC105378042
GH06F146819 0.7 ENCODE 0.3 -16.1 -16101 1.3 SMARCE1 RNF2 HLF JUNB ZEB2 CEBPG GATA3 IKZF1 NFE2 FOSL2 ADGB STXBP5-AS1 KATNBL1P6 LOC105378042
GH06F146850 0.8 Ensembl ENCODE 0.2 -46.7 -46660 0.2 PKNOX1 JUND PBX2 IKZF1 FOS NFE2L2 STXBP5 LOC105378042 KATNBL1P6
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KATNBL1P6 on UCSC Golden Path with GeneCards custom track

Promoters for KATNBL1P6 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001886425 24 401 RNF2 L3MBTL2 NRF1 NR4A1 UBTF CHAMP1 POLR2H POLR2A ZBTB33 SUPT5H

Genomic Location for KATNBL1P6 Gene

Chromosome:
6
Start:
146,801,669 bp from pter
End:
146,803,824 bp from pter
Size:
2,156 bases
Orientation:
Minus strand

Genomic View for KATNBL1P6 Gene

Genes around KATNBL1P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KATNBL1P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KATNBL1P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KATNBL1P6 Gene

ORGUL Member Location for KATNBL1P6 Gene

ORGUL Member Location for KATNBL1P6 gene

Proteins for KATNBL1P6 Gene

Post-translational modifications for KATNBL1P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KATNBL1P6 Gene

Domains & Families for KATNBL1P6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KATNBL1P6 Gene

Function for KATNBL1P6 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KATNBL1P6 Gene

Localization for KATNBL1P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KATNBL1P6 Gene

Pathways & Interactions for KATNBL1P6 Gene

SuperPathways for KATNBL1P6 Gene

No Data Available

Interacting Proteins for KATNBL1P6 Gene

Gene Ontology (GO) - Biological Process for KATNBL1P6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KATNBL1P6 Gene

Transcripts for KATNBL1P6 Gene

fRNAdb Secondary structures for KATNBL1P6 Gene

  • FR217614

mRNA/cDNA for KATNBL1P6 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for KATNBL1P6 Gene

No ASD Table

Relevant External Links for KATNBL1P6 Gene

GeneLoc Exon Structure for
KATNBL1P6
ECgene alternative splicing isoforms for
KATNBL1P6

Expression for KATNBL1P6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for KATNBL1P6 Gene

NURSA nuclear receptor signaling pathways regulating expression of KATNBL1P6 Gene:

KATNBL1P6
genes like me logo Genes that share expression patterns with KATNBL1P6: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for KATNBL1P6 Gene

Orthologs for KATNBL1P6 Gene

Evolution for KATNBL1P6 Gene

ENSEMBL:
Gene Tree for KATNBL1P6 (if available)
TreeFam:
Gene Tree for KATNBL1P6 (if available)

No data available for Orthologs for KATNBL1P6 Gene

Paralogs for KATNBL1P6 Gene

No data available for Paralogs for KATNBL1P6 Gene

Variants for KATNBL1P6 Gene

Sequence variations from dbSNP and Humsavar for KATNBL1P6 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1053029 -- 146,803,536(+) TCACA(A/G)TTTGT intron-variant, nc-transcript-variant
rs111231967 -- 146,802,773(+) CAAAT(C/G)CTCTT intron-variant, nc-transcript-variant, downstream-variant-500B
rs111430449 -- 146,803,187(+) TTCTC(C/T)TTCTC intron-variant, nc-transcript-variant
rs111887614 -- 146,802,742(+) AATTA(C/T)ACAGT intron-variant, nc-transcript-variant, downstream-variant-500B
rs112005841 -- 146,802,531(+) TATAA(C/T)TCCCA intron-variant, nc-transcript-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for KATNBL1P6 Gene

Variant ID Type Subtype PubMed ID
nsv981192 CNV duplication 23825009
nsv830838 CNV gain 17160897

Relevant External Links for KATNBL1P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KATNBL1P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KATNBL1P6 Gene

Disorders for KATNBL1P6 Gene

Relevant External Links for KATNBL1P6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KATNBL1P6

No disorders were found for KATNBL1P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KATNBL1P6 Gene

Publications for KATNBL1P6 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  2. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen J.S. … Haussler D. (PLoS Comput. Biol. 2006) 1
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1

Products for KATNBL1P6 Gene

Sources for KATNBL1P6 Gene

Content
Loading form....