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Aliases for KATNBL1 Gene

Aliases for KATNBL1 Gene

  • Katanin Regulatory Subunit B1 Like 1 2 3
  • Katanin P80 Subunit B-Like 1 2 3 4 5
  • C15orf29 3 4
  • Chromosome 15 Open Reading Frame 29 2

External Ids for KATNBL1 Gene

Previous HGNC Symbols for KATNBL1 Gene

  • C15orf29

Previous GeneCards Identifiers for KATNBL1 Gene

  • GC15M034433

Summaries for KATNBL1 Gene

GeneCards Summary for KATNBL1 Gene

KATNBL1 (Katanin Regulatory Subunit B1 Like 1) is a Protein Coding gene.

Gene Wiki entry for KATNBL1 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KATNBL1 Gene

Genomics for KATNBL1 Gene

Regulatory Elements for KATNBL1 Gene

Enhancers for KATNBL1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around KATNBL1 on UCSC Golden Path with GeneCards custom track

Promoters for KATNBL1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around KATNBL1 on UCSC Golden Path with GeneCards custom track

Genomic Location for KATNBL1 Gene

Chromosome:
15
Start:
34,140,674 bp from pter
End:
34,210,096 bp from pter
Size:
69,423 bases
Orientation:
Minus strand

Genomic View for KATNBL1 Gene

Genes around KATNBL1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KATNBL1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KATNBL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KATNBL1 Gene

Proteins for KATNBL1 Gene

  • Protein details for KATNBL1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H079-KTBL1_HUMAN
    Recommended name:
    KATNB1-like protein 1
    Protein Accession:
    Q9H079
    Secondary Accessions:
    • A8KAF6
    • Q2TAC0
    • Q9H670

    Protein attributes for KATNBL1 Gene

    Size:
    304 amino acids
    Molecular mass:
    34767 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB15394.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

neXtProt entry for KATNBL1 Gene

Proteomics data for KATNBL1 Gene at MOPED

Post-translational modifications for KATNBL1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for KATNBL1 Gene

Domains & Families for KATNBL1 Gene

Protein Domains for KATNBL1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for KATNBL1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with KATNBL1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for KATNBL1 Gene

Function for KATNBL1 Gene

genes like me logo Genes that share phenotypes with KATNBL1: view

Animal Model Products

miRNA for KATNBL1 Gene

miRTarBase miRNAs that target KATNBL1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for KATNBL1 Gene

Localization for KATNBL1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for KATNBL1 Gene COMPARTMENTS Subcellular localization image for KATNBL1 gene
Compartment Confidence
nucleus 5
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for KATNBL1 Gene

Pathways & Interactions for KATNBL1 Gene

SuperPathways for KATNBL1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for KATNBL1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KATNBL1 Gene

Drugs & Compounds for KATNBL1 Gene

No Compound Related Data Available

Transcripts for KATNBL1 Gene

Unigene Clusters for KATNBL1 Gene

Katanin p80 subunit B-like 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for KATNBL1 Gene

No ASD Table

Relevant External Links for KATNBL1 Gene

GeneLoc Exon Structure for
KATNBL1
ECgene alternative splicing isoforms for
KATNBL1

Expression for KATNBL1 Gene

mRNA expression in normal human tissues for KATNBL1 Gene

Protein differential expression in normal tissues from HIPED for KATNBL1 Gene

This gene is overexpressed in Bone (60.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for KATNBL1 Gene



SOURCE GeneReport for Unigene cluster for KATNBL1 Gene Hs.633566

genes like me logo Genes that share expression patterns with KATNBL1: view

Protein tissue co-expression partners for KATNBL1 Gene

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for KATNBL1 Gene

Orthologs for KATNBL1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for KATNBL1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia KATNBL1 35
  • 93.64 (n)
  • 93.42 (a)
KATNBL1 36
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia KATNBL1 35
  • 94.52 (n)
  • 94.41 (a)
KATNBL1 36
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Katnbl1 35
  • 88.85 (n)
  • 87.63 (a)
Katnbl1 16
Katnbl1 36
  • 88 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia KATNBL1 35
  • 100 (n)
  • 100 (a)
KATNBL1 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Katnbl1 35
  • 89.52 (n)
  • 87.96 (a)
oppossum
(Monodelphis domestica)
Mammalia KATNBL1 36
  • 86 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia KATNBL1 36
  • 60 (a)
OneToOne
chicken
(Gallus gallus)
Aves C5H15ORF29 35
  • 79.84 (n)
  • 77.08 (a)
C5H15ORF29 36
  • 77 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia KATNBL1 36
  • 67 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia katnbl1 35
  • 69.34 (n)
  • 65.89 (a)
zebrafish
(Danio rerio)
Actinopterygii katnbl1 35
  • 56.8 (n)
  • 46.93 (a)
wufc76b10 35
katnbl1 36
  • 43 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.2105 35
sea squirt
(Ciona savignyi)
Ascidiacea CSA.6894 36
  • 38 (a)
OneToOne
Species with no ortholog for KATNBL1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for KATNBL1 Gene

ENSEMBL:
Gene Tree for KATNBL1 (if available)
TreeFam:
Gene Tree for KATNBL1 (if available)

Paralogs for KATNBL1 Gene

genes like me logo Genes that share paralogs with KATNBL1: view

No data available for Paralogs for KATNBL1 Gene

Variants for KATNBL1 Gene

Sequence variations from dbSNP and Humsavar for KATNBL1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs5811822 -- 34,163,897(+) CATTC(-/T)TTTTT intron-variant
rs5811823 -- 34,180,270(+) ATCTG(-/A)AAAAA intron-variant
rs5811824 -- 34,195,690(+) ATCTC(-/A)AAAAA intron-variant
rs6495551 -- 34,148,901(+) GACCA(C/T)AGTAA intron-variant
rs6495558 -- 34,157,284(+) gctgc(C/T)catga intron-variant

Variation tolerance for KATNBL1 Gene

Residual Variation Intolerance Score: 57.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.46; 43.22% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Relevant External Links for KATNBL1 Gene

Disorders for KATNBL1 Gene

Relevant External Links for KATNBL1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KATNBL1

No disorders were found for KATNBL1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KATNBL1 Gene

Publications for KATNBL1 Gene

  1. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 2 3 4 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  3. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  5. The spindle assembly function of Caenorhabditis elegans katanin does not require microtubule-severing activity. (PMID: 21372175) McNally K.P. … McNally F.J. (Mol. Biol. Cell 2011) 3

Products for KATNBL1 Gene

Sources for KATNBL1 Gene

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