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Aliases for KATNBL1 Gene

Aliases for KATNBL1 Gene

  • Katanin P80 Subunit B-Like 1 2 3 4
  • C15orf29 3 4
  • Chromosome 15 Open Reading Frame 29 2
  • KATNB1-Like Protein 1 3

External Ids for KATNBL1 Gene

Previous HGNC Symbols for KATNBL1 Gene

  • C15orf29

Previous GeneCards Identifiers for KATNBL1 Gene

  • GC15M034433

Summaries for KATNBL1 Gene

GeneCards Summary for KATNBL1 Gene

KATNBL1 (Katanin P80 Subunit B-Like 1) is a Protein Coding gene.

Gene Wiki entry for KATNBL1 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KATNBL1 Gene

Genomics for KATNBL1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for KATNBL1 Gene

Start:
34,140,674 bp from pter
End:
34,210,096 bp from pter
Size:
69,423 bases
Orientation:
Minus strand

Genomic View for KATNBL1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for KATNBL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KATNBL1 Gene

No data available for Regulatory Elements for KATNBL1 Gene

Proteins for KATNBL1 Gene

  • Protein details for KATNBL1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H079-KTBL1_HUMAN
    Recommended name:
    KATNB1-like protein 1
    Protein Accession:
    Q9H079
    Secondary Accessions:
    • A8KAF6
    • Q2TAC0
    • Q9H670

    Protein attributes for KATNBL1 Gene

    Size:
    304 amino acids
    Molecular mass:
    34767 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB15394.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

neXtProt entry for KATNBL1 Gene

Proteomics data for KATNBL1 Gene at MOPED

Post-translational modifications for KATNBL1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for KATNBL1 Gene

Domains for KATNBL1 Gene

Protein Domains for KATNBL1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with KATNBL1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KATNBL1 Gene

Function for KATNBL1 Gene

Gene Ontology (GO) - Molecular Function for KATNBL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with KATNBL1: view

Phenotypes for KATNBL1 Gene

genes like me logo Genes that share phenotypes with KATNBL1: view

Animal Model Products

miRNA for KATNBL1 Gene

miRTarBase miRNAs that target KATNBL1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for KATNBL1 Gene

Localization for KATNBL1 Gene

Gene Ontology (GO) - Cellular Components for KATNBL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IDA --
genes like me logo Genes that share ontologies with KATNBL1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for KATNBL1 Gene

Pathways for KATNBL1 Gene

SuperPathways for KATNBL1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for KATNBL1 Gene

None

No data available for Pathways by source for KATNBL1 Gene

Transcripts for KATNBL1 Gene

Unigene Clusters for KATNBL1 Gene

Katanin p80 subunit B-like 1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for KATNBL1

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for KATNBL1 Gene

No ASD Table

Relevant External Links for KATNBL1 Gene

GeneLoc Exon Structure for
KATNBL1
ECgene alternative splicing isoforms for
KATNBL1

Expression for KATNBL1 Gene

mRNA expression in normal human tissues for KATNBL1 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for KATNBL1 Gene

SOURCE GeneReport for Unigene cluster for KATNBL1 Gene Hs.633566

genes like me logo Genes that share expressions with KATNBL1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for KATNBL1 Gene

Orthologs for KATNBL1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for KATNBL1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia KATNBL1 35
  • 100 (n)
  • 100 (a)
KATNBL1 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia KATNBL1 35
  • 93.64 (n)
  • 93.42 (a)
KATNBL1 36
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia KATNBL1 35
  • 94.52 (n)
  • 94.41 (a)
KATNBL1 36
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Katnbl1 35
  • 88.85 (n)
  • 87.63 (a)
Katnbl1 16
Katnbl1 36
  • 88 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia KATNBL1 36
  • 86 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia KATNBL1 36
  • 60 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Katnbl1 35
  • 89.52 (n)
  • 87.96 (a)
chicken
(Gallus gallus)
Aves C5H15ORF29 35
  • 79.84 (n)
  • 77.08 (a)
C5H15ORF29 36
  • 77 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia KATNBL1 36
  • 67 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia katnbl1 35
  • 69.34 (n)
  • 65.89 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.2105 35
zebrafish
(Danio rerio)
Actinopterygii katnbl1 35
  • 56.8 (n)
  • 46.93 (a)
katnbl1 36
  • 43 (a)
OneToOne
wufc76b10 35
sea squirt
(Ciona savignyi)
Ascidiacea CSA.6894 36
  • 38 (a)
OneToOne
Species with no ortholog for KATNBL1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for KATNBL1 Gene

ENSEMBL:
Gene Tree for KATNBL1 (if available)
TreeFam:
Gene Tree for KATNBL1 (if available)

Paralogs for KATNBL1 Gene

Selected SIMAP similar genes for KATNBL1 Gene using alignment to 10 proteins:

genes like me logo Genes that share paralogs with KATNBL1: view

No data available for Paralogs for KATNBL1 Gene

Variants for KATNBL1 Gene

Sequence variations from dbSNP and Humsavar for KATNBL1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs1054671 -- 34,144,253(-) ATAAG(C/T)TCAGC intron-variant
rs1134299 -- 34,147,940(-) gcagt(A/G)agctg intron-variant
rs1836977 -- 34,153,752(+) TTTTA(G/T)TAGAG intron-variant
rs1836978 -- 34,179,849(-) CTTCA(A/G)ATTAT intron-variant
rs1978810 -- 34,181,994(-) CACCT(C/G)GCATA intron-variant

Relevant External Links for KATNBL1 Gene

HapMap Linkage Disequilibrium report
KATNBL1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for KATNBL1 Gene

Disorders for KATNBL1 Gene

No disorders were found for KATNBL1 Gene.

No data available for UniProtKB/Swiss-Prot for KATNBL1 Gene

Publications for KATNBL1 Gene

  1. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 2 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. From ORFeome to biology: a functional genomics pipeline. (PMID: 15489336) Wiemann S. … Poustka A. (Genome Res. 2004) 3
  5. A human protein-protein interaction network: a resource for annotating the proteome. (PMID: 16169070) Stelzl U. … Wanker E.E. (Cell 2005) 3

Products for KATNBL1 Gene

Sources for KATNBL1 Gene

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