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Aliases for KATNAL2 Gene

Aliases for KATNAL2 Gene

  • Katanin Catalytic Subunit A1 Like 2 2 3 5
  • Katanin P60 Subunit A-Like 2 2 4
  • EC 3.6.4.3 4 56
  • Katanin Catalytic Subunit A Like 2 2
  • Katanin P60 Subunit A Like 2 2
  • P60 Katanin-Like 2 4

External Ids for KATNAL2 Gene

Previous GeneCards Identifiers for KATNAL2 Gene

  • GC18P042781
  • GC18U900248
  • GC18P044526
  • GC18P041427

Summaries for KATNAL2 Gene

GeneCards Summary for KATNAL2 Gene

KATNAL2 (Katanin Catalytic Subunit A1 Like 2) is a Protein Coding gene. Diseases associated with KATNAL2 include Tinea Capitis and Dermatophytosis. Gene Ontology (GO) annotations related to this gene include microtubule binding and microtubule-severing ATPase activity. An important paralog of this gene is KATNA1.

UniProtKB/Swiss-Prot for KATNAL2 Gene

  • Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.

Additional gene information for KATNAL2 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KATNAL2 Gene

Genomics for KATNAL2 Gene

GeneHancer (GH) Regulatory Elements for KATNAL2 Gene

Promoters and enhancers for KATNAL2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18I046916 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 563.9 0.0 -45 2.9 ATF1 ARNT SIN3A YY1 GLIS2 ZNF207 ZNF143 RUNX3 SP5 ZHX2 KATNAL2 ENSG00000279354 PIAS2 HDHD2 LOC105372097
GH18I046946 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 550.3 +29.3 29307 1.2 MXI1 PKNOX1 ZNF449 DDX20 MAX SIN3A BMI1 RFX5 ZNF335 POLR2A KATNAL2 HAUS1 EPG5 HDHD2 ELOA3D GC18P046926
GH18I047031 Promoter 0.5 EPDnew 550.1 +112.6 112557 0.1 ELOA3 KATNAL2 LOC101930171
GH18I047174 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 5.6 +258.3 258332 2.4 FOXA2 ZFP64 ARID4B SIN3A DMAP1 ZNF48 YY1 ZNF121 POLR2B GLIS2 IER3IP1 ENSG00000267228 HDHD2 KATNAL2 GC18P047085
GH18I047149 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 5.5 +233.1 233079 2.5 PKNOX1 FOXA2 SMAD1 ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 POLR2B HDHD2 IER3IP1 KATNAL2 ENSG00000267228 GC18P047085
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around KATNAL2 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the KATNAL2 gene promoter:

Genomic Locations for KATNAL2 Gene

Genomic Locations for KATNAL2 Gene
chr18:46,917,492-47,102,243
(GRCh38/hg38)
Size:
184,752 bases
Orientation:
Plus strand
chr18:44,497,455-44,628,614
(GRCh37/hg19)

Genomic View for KATNAL2 Gene

Genes around KATNAL2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KATNAL2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KATNAL2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KATNAL2 Gene

Proteins for KATNAL2 Gene

  • Protein details for KATNAL2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IYT4-KATL2_HUMAN
    Recommended name:
    Katanin p60 ATPase-containing subunit A-like 2
    Protein Accession:
    Q8IYT4

    Protein attributes for KATNAL2 Gene

    Size:
    538 amino acids
    Molecular mass:
    61253 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BI560635; Type=Frameshift; Positions=183, 188, 200, 203; Evidence={ECO:0000305};

    Alternative splice isoforms for KATNAL2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for KATNAL2 Gene

Selected DME Specific Peptides for KATNAL2 Gene

Q8IYT4:
  • SKWRGDSEK
  • RRLEKRI
  • LAKAVATEC

Post-translational modifications for KATNAL2 Gene

No Post-translational modifications

Domains & Families for KATNAL2 Gene

Gene Families for KATNAL2 Gene

HGNC:
Human Protein Atlas (HPA):
  • Enzymes
  • Predicted intracellular proteins

Protein Domains for KATNAL2 Gene

Suggested Antigen Peptide Sequences for KATNAL2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8IYT4

UniProtKB/Swiss-Prot:

KATL2_HUMAN :
  • Belongs to the AAA ATPase family. Katanin p60 subunit A1 subfamily. A-like 2 sub-subfamily.
Family:
  • Belongs to the AAA ATPase family. Katanin p60 subunit A1 subfamily. A-like 2 sub-subfamily.
genes like me logo Genes that share domains with KATNAL2: view

Function for KATNAL2 Gene

Molecular function for KATNAL2 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
ATP + H(2)O = ADP + phosphate.
UniProtKB/Swiss-Prot Function:
Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.

Enzyme Numbers (IUBMB) for KATNAL2 Gene

Phenotypes From GWAS Catalog for KATNAL2 Gene

Gene Ontology (GO) - Molecular Function for KATNAL2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25910212
GO:0005524 ATP binding IEA --
GO:0008568 microtubule-severing ATPase activity IEA --
GO:0016787 hydrolase activity IEA --
GO:0016887 contributes_to ATPase activity IBA --
genes like me logo Genes that share ontologies with KATNAL2: view
genes like me logo Genes that share phenotypes with KATNAL2: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KATNAL2 Gene

Localization for KATNAL2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for KATNAL2 Gene

Cytoplasm, cytoskeleton. Cytoplasm. Cytoplasm, cytoskeleton, spindle. Cytoplasm, cytoskeleton, spindle pole. Note=Localizes within the cytoplasm, partially overlapping with microtubules in interphase and to the mitotic spindle and spindle poles during mitosis. {ECO:0000269 PubMed:26929214}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for KATNAL2 gene
Compartment Confidence
cytoskeleton 5
nucleus 4
cytosol 3
mitochondrion 1
endoplasmic reticulum 1
golgi apparatus 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Intermediate filaments (2)
  • Nucleoplasm (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for KATNAL2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000922 spindle pole IEA,IDA 26929214
GO:0005634 nucleus IBA --
GO:0005737 cytoplasm IEA,IDA 26929214
GO:0005819 spindle IDA,IEA 26929214
GO:0005856 cytoskeleton IEA --
genes like me logo Genes that share ontologies with KATNAL2: view

Pathways & Interactions for KATNAL2 Gene

SuperPathways for KATNAL2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for KATNAL2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0051013 microtubule severing IEA --
genes like me logo Genes that share ontologies with KATNAL2: view

No data available for Pathways by source and SIGNOR curated interactions for KATNAL2 Gene

Drugs & Compounds for KATNAL2 Gene

(3) Drugs for KATNAL2 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Phosphoric acid Approved Pharma 0
Water Approved Pharma 0
ATP Investigational Nutra Agonist 0

(1) Additional Compounds for KATNAL2 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
ADP
  • Adenosindiphosphorsaeure
  • Adenosine 5'-pyrophosphate
  • Adenosine diphosphate
  • Adenosine pyrophosphate
  • Adenosine-5'-diphosphate
Full agonist, Agonist 58-64-0
genes like me logo Genes that share compounds with KATNAL2: view

Transcripts for KATNAL2 Gene

mRNA/cDNA for KATNAL2 Gene

(25) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KATNAL2 Gene

Katanin p60 subunit A-like 2:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for KATNAL2 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16
SP1: - -
SP2:
SP3: -
SP4:

Relevant External Links for KATNAL2 Gene

GeneLoc Exon Structure for
KATNAL2
ECgene alternative splicing isoforms for
KATNAL2

Expression for KATNAL2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KATNAL2 Gene

Protein differential expression in normal tissues from HIPED for KATNAL2 Gene

This gene is overexpressed in Bone marrow stromal cell (13.0) and Lymph node (7.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for KATNAL2 Gene



Protein tissue co-expression partners for KATNAL2 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of KATNAL2 Gene:

KATNAL2

SOURCE GeneReport for Unigene cluster for KATNAL2 Gene:

Hs.404137
genes like me logo Genes that share expression patterns with KATNAL2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KATNAL2 Gene

Orthologs for KATNAL2 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for KATNAL2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia KATNAL2 33 34
  • 99.28 (n)
dog
(Canis familiaris)
Mammalia KATNAL2 33 34
  • 89.27 (n)
cow
(Bos Taurus)
Mammalia KATNAL2 33 34
  • 87.98 (n)
rat
(Rattus norvegicus)
Mammalia Katnal2 33
  • 84.52 (n)
mouse
(Mus musculus)
Mammalia Katnal2 33 16 34
  • 84.28 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia KATNAL2 34
  • 70 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia KATNAL2 34
  • 67 (a)
OneToOne
chicken
(Gallus gallus)
Aves KATNAL2 33 34
  • 73.74 (n)
lizard
(Anolis carolinensis)
Reptilia KATNAL2 34
  • 66 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia katnal2 33
  • 69.76 (n)
zebrafish
(Danio rerio)
Actinopterygii katnal2 33 34
  • 65.39 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG10793 33 34
  • 51.5 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004012 33
  • 47.33 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes VPS4 34
  • 32 (a)
OneToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons AT2G34560 33
  • 56 (n)
rice
(Oryza sativa)
Liliopsida Os01g0673500 33
  • 60.69 (n)
Species where no ortholog for KATNAL2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for KATNAL2 Gene

ENSEMBL:
Gene Tree for KATNAL2 (if available)
TreeFam:
Gene Tree for KATNAL2 (if available)

Paralogs for KATNAL2 Gene

Paralogs for KATNAL2 Gene

genes like me logo Genes that share paralogs with KATNAL2: view

Variants for KATNAL2 Gene

Sequence variations from dbSNP and Humsavar for KATNAL2 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs193920804 uncertain-significance, Malignant tumor of prostate 47,034,898(+) A/G genic_upstream_transcript_variant, intron_variant
rs1000002092 -- 46,928,442(+) G/A genic_upstream_transcript_variant, intron_variant
rs1000030999 -- 46,946,259(+) A/G 5_prime_UTR_variant, coding_sequence_variant, genic_upstream_transcript_variant, missense_variant, non_coding_transcript_variant, upstream_transcript_variant
rs1000068562 -- 46,932,275(+) C/A genic_upstream_transcript_variant, intron_variant
rs1000124933 -- 46,952,394(+) T/C/G genic_upstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for KATNAL2 Gene

Variant ID Type Subtype PubMed ID
dgv3346n100 CNV loss 25217958
esv2659165 CNV deletion 23128226
esv2717039 CNV deletion 23290073
esv3574009 CNV gain 25503493
esv3583037 CNV loss 25503493
esv3583040 CNV loss 25503493
esv3642446 CNV gain 21293372
esv3642447 CNV gain 21293372
esv3642448 CNV loss 21293372
esv3642450 CNV loss 21293372
esv3642451 CNV gain 21293372
esv3642452 CNV gain 21293372
esv998188 CNV gain 20482838
nsv1056744 CNV gain 25217958
nsv1057235 CNV loss 25217958
nsv1067278 CNV gain 25217958
nsv1138621 CNV deletion 24896259
nsv1149591 CNV duplication 26484159
nsv167 CNV insertion 15895083
nsv2280 CNV insertion 18451855
nsv2281 CNV insertion 18451855
nsv2284 CNV insertion 18451855
nsv471406 CNV gain 19718026
nsv509693 CNV insertion 20534489
nsv576813 CNV loss 21841781
nsv576815 CNV gain 21841781
nsv576818 CNV loss 21841781
nsv576819 CNV loss 21841781
nsv828225 CNV gain 20364138
nsv833639 CNV loss 17160897
nsv833640 CNV loss 17160897
nsv9629 CNV gain+loss 18304495

Variation tolerance for KATNAL2 Gene

Residual Variation Intolerance Score: 75.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.53; 44.20% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for KATNAL2 Gene

Human Gene Mutation Database (HGMD)
KATNAL2
SNPedia medical, phenotypic, and genealogical associations of SNPs for
KATNAL2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for KATNAL2 Gene

Disorders for KATNAL2 Gene

MalaCards: The human disease database

(2) MalaCards diseases for KATNAL2 Gene - From: HGMD and DISEASES

Disorder Aliases PubMed IDs
tinea capitis
  • dermatophytosis of scalp
dermatophytosis
  • tinea
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for KATNAL2

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with KATNAL2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for KATNAL2 Gene

Publications for KATNAL2 Gene

  1. Proteomic Analysis of the Mammalian Katanin Family of Microtubule-severing Enzymes Defines Katanin p80 subunit B-like 1 (KATNBL1) as a Regulator of Mammalian Katanin Microtubule-severing. (PMID: 26929214) Cheung K … Torres JZ (Molecular & cellular proteomics : MCP 2016) 3 4 58
  2. Meta-analysis of genome-wide association studies for personality. (PMID: 21173776) de Moor MH … Boomsma DI (Molecular psychiatry 2012) 3 44 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  4. A novel family of katanin-like 2 protein isoforms (KATNAL2), interacting with nucleotide-binding proteins Nubp1 and Nubp2, are key regulators of different MT-based processes in mammalian cells. (PMID: 26153462) Ververis A … Santama N (Cellular and molecular life sciences : CMLS 2016) 3 58
  5. A Retroviral CRISPR-Cas9 System for Cellular Autism-Associated Phenotype Discovery in Developing Neurons. (PMID: 27161796) Williams MR … Luikart BW (Scientific reports 2016) 3 58

Products for KATNAL2 Gene

Sources for KATNAL2 Gene

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