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KATNA1 Gene

protein-coding   GIFtS: 57

GC06M149957
katanin p60 (ATPase-containing) subunit A 1
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
EC 3.6.4.3 3
OTTHUMP00000017392 2
Descriptions
Katanin p60 subunit A1 3
katanin p60 (ATPase-containing) subunit A 1 2
katanin p60 subunit A 1 2
p60 katanin 3
External Ids
HGNC: 62161
Entrez Gene: 111042
UniProtKB: O754493
Ensembl: ENSG000001866257
Search outside databases for aliases for KATNA1 gene

Previous GC identifers: GC06M149429 GC06M149763 GC06M9O0076

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for KATNA1:
Microtubules, polymers of alpha and beta tubulin subunits, form the mitotic spindle of a dividing
cell and help to organize membranous organelles during interphase. Katanin is a heterodimer that
consists of a 60 kDa ATPase (p60 subunit A 1) and an 80 kDa accessory protein (p80 subunit B 1).
The p60 subunit acts to sever and disassemble microtubules, while the p80 subunit targets the
enzyme to the centrosome. This gene encodes the p80 subunit. This protein is a member of the AAA
family of ATPases. [provided by RefSeq]

UniProtKB/Swiss-Prot: KTNA1_HUMAN, O75449
Function: Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid
reorganization of cellular microtubule arrays, such as during disassembly of interphase
microtubules at the G2-M transition. May also be required for microtubule release from the
centrosome after nucleation. In mitotic spindles this could allow depolymerization of the
microtubule end proximal to the centrosome, and subsequent poleward microtubule flux. In neurons,
microtubule release within the cell body may allow their subsequent transport into neuronal
processes by microtubule dependent motor proteins. This transport is required for axonal growth
(By similarity)

Gene Wiki entry for KATNA1

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the KATNA1 gene  

Entrez Gene cytogenetic band: 6q25.1   Ensembl cytogenetic band:  6q25.1   HGNC cytogenetic band: 6q24.3

KATNA1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06M149957:     (about GC identifiers)

Start:
149,957,702 bp from pter
End:
150,011,543 bp from pter
Size:
53,842 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000006.10  NT_025741.14  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: KTNA1_HUMAN, O75449 (See protein sequence)
Recommended Name: Katanin p60 ATPase-containing subunit A1  
Size: 491 amino acids; 55965 Da
Subunit: Can homooligomerize into hexameric rings, which may be promoted by interaction with
microtubules (By similarity). Interacts with KATNB1, which may serve as a targeting subunit
Subcellular location: Cytoplasm. Centrosome. Spindle. Note=Predominantly cytoplasmic. Also
localized to the interphase centrosome. Enhanced recruitment to the mitotic spindle poles requires
microtubules and interaction with KATNB1
Secondary accessions: Q5TFA8 Q5TFA9 Q86VN2 Q9NU52
Alternative splicing: 2 isoforms:  O75449-1   O75449-2   

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_008975.1  

    ENSEMBL proteins: 
    ENSP00000356381 ENSP00000335106 ENSP00000335180 


    Human Recombinant Proteins 
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    Recombinant Proteins from Abcam (KATNA1)
    Human Recombinant Proteins from Abnova (KATNA1)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    4 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000922 spindle pole IDA10751153
    GO:0005737 cytoplasm IEA--
    GO:0005813 centrosome IEA--
    GO:0005874 microtubule IEA--
    About this table

    Antibodies for KATNA1: 
    Browse Antibodies Central at Invitrogen
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    Sigma-Aldrich Antibodies for KATNA1
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    Antibodies from Abcam (KATNA1), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (KATNA1)
    Novus Biologicals Antibody for KATNA1

    Assays for KATNA1: 
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    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    4 InterPro domains/families:
     IPR003959 ATPase_AAA_core
     IPR015415 Vps4_C
     IPR003960 ATPase_AAA_CS
     IPR003593 ATPase_AAA+_core


       GeneDecks  KATNA1 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry O75449

    ProtoNet protein and cluster: O75449

    1 Blocks protein family: IPB003960 AAA-protein subdomain

    UniProtKB/Swiss-Prot: KTNA1_HUMAN, O75449
    Domain: The N-terminus is sufficient for interaction with microtubules, although high affinity
    binding requires an intact C-terminal domain and ATP, which promotes oligomerization (By
    similarity)
    Similarity: Belongs to the AAA ATPase family

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (KATNA1)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (KATNA1)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_007044

                  Applied Biosystems Silencer® siRNAs for KATNA1

                  Sigma-Aldrich siRNA and siRNA Panels for KATNA1  
                         Sigma-Aldrich shRNA for KATNA1  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for KATNA1
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_007044
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_007044
                                     untagged cDNA clone in CMV expression vector: NM_007044 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_007044

    UniProtKB/Swiss-Prot: KTNA1_HUMAN, O75449
    Function: Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid
    reorganization of cellular microtubule arrays, such as during disassembly of interphase
    microtubules at the G2-M transition. May also be required for microtubule release from the
    centrosome after nucleation. In mitotic spindles this could allow depolymerization of the
    microtubule end proximal to the centrosome, and subsequent poleward microtubule flux. In neurons,
    microtubule release within the cell body may allow their subsequent transport into neuronal
    processes by microtubule dependent motor proteins. This transport is required for axonal growth
    (By similarity)
    Catalytic activity: ATP + H(2)O = ADP + phosphate
    Enzyme regulation: ATPase activity is stimulated by microtubules, which promote homooligomerization
    (By similarity). ATP dependent microtubule severing is stimulated by interaction with KATNB1
    Enzyme Number (IUBMB): EC 3.6.4.3 

    1 MGI phenotypic allele for Katna1 (no phenotypes)


    5/7 Gene Ontology (GO) molecular function terms (links to tree view) (see all 7 ):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000166 nucleotide binding IEA--
    GO:0005524 ATP binding IEA--
    GO:0008017 microtubule binding IDA10751153
    GO:0008568contributes to microtubule-severing ATPase activity IDA10751153
    GO:0016787 hydrolase activity IEA--
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


    1 Sigma-Aldrich "Your Favorite Gene" Pathway for  KATNA1  (Your Favorite Gene powered by Ingenuity) 
     Purine Metabolism

       GeneDecks  KATNA1 for the pathways selected above  
    About GeneDecksing


    5 Interacting proteins for KATNA1 (ENSP000003563813) via UniProtKB, MINT, and/or STRING
    InteractantInteraction Details
    GeneCardExternal ID(s)
    KATNB1ENSP000003689823STRING (score=.977)
    DYNLT1ENSP000003560563STRING (score=.899)
    NDEL1ENSP000002997343STRING (score=.899)
    PAFAH1B1ENSP000000069513STRING (score=.899)
    --ENSP000003517503STRING (score=.899)
    About this table

    4 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007049 cell cycle IEA--
    GO:0007067 mitosis IEA--
    GO:0051301 cell division IEA--
    GO:0051329 interphase of mitotic cell cycle IMP10751153
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for KATNA1

    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (KATNA1)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (KATNA1)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_007044

                  Sigma-Aldrich siRNA and siRNA Panels for KATNA1  
                         Sigma-Aldrich shRNA for KATNA1  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_007044  

    REFSEQ mRNAs for KATNA1 gene: 

    NM_007044.2   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_007044  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_007044
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_007044
                                     untagged cDNA clone in CMV expression vector: NM_007044 

    Additional cDNA sequence: 

    AF056022.1 AK292090.1 BC050428.1 CR590166.1 CR600129.1 CR601101.1 

    12 DOTS entries:

    DT.91739871  DT.95273610  DT.100783414  DT.100672584  DT.217838  DT.425072  DT.91739852  DT.95147814 
    DT.95273608  DT.95273609  DT.70103242  DT.99998659 

    24/144 AceView cDNA sequences (see all 144 ):

    AA344883 AI873674 CR601101 CR600129 AI796400 AI268183 BI755443 AA281537 
    BG702518 AA913183 BU674288 AA137240 CA427490 AL525872 AA252346 CB243927 
    AI246235 BQ020488 CR619457 CA950724 BX102424 CB151916 CR590166 BC050428 

    highest scoring ESTs for KATNA1:

    AF056022 AL543528 BC050428 BG390353 AA353514 AA403059 AA471300 AI191768 AL525872 AL701281 

    Unigene Cluster for KATNA1:

    Katanin p60 (ATPase-containing) subunit A 1
    Hs.450175  [show with all ESTs]
    Unigene Representative Sequence: AK292090


    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for KATNA1

    ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12a · 12b
    SP1:                          -                             -     -                             -               
    SP2:                          -                                                                                 
    SP3:                          -     -     -     -           -                                                   
    SP4:                                                                                                            
    SP5:                                                                                                            

    About this scheme

    ECgene alternative splicing isoforms for KATNA1

    3 Ensembl transcripts including schematic representations:
    ENST00000367411  ENST00000335647  ENST00000335643  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    KATNA1 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for KATNA1

    1 / 2 / 3

    4 probe-sets matching KATNA1 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

    32708_g_at2, 3 U95-A 2 1.00 0.97 1.00 1.00 AI191768 0.60 1.00 0.82 1

    32707_at2, 3 U95-A 1 0.62 1.00 0.24 0.58 AI191768 0.60 1.00 0.82 1

    205526_s_at2, 3 U133-A 1 1.00 1.00 -- -- NM_007044 0.60 1.00 0.82 1

    205526_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    About this table
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: TAAACTGTGA

    SOURCE GeneReport for Unigene cluster: Hs.450175

    Expression variation in blood from EXPOLDB for KATNA1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for KATNA1 gene from 5/15 species (see all 15 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    KATNA11   -- katanin p60 (ATPase-containing) subunit A 1 92.8(n)
    97.35(a)
    476240  XM_533445.2  XP_533445.1 
    chimpanzee
    (Pan troglodytes)
    KATNA11   -- katanin p60 (ATPase-containing) subunit A 1 99.59(n)
    99.8(a)
    748379  XM_001173237.1  XP_001173237.1 
    cow
    (Bos taurus)
    KATNA11   -- katanin p60 (ATPase-containing) subunit A 1 93.14(n)
    97.15(a)
    506715  XM_583196.3  XP_583196.2 
    rat
    (Rattus norvegicus)
    Katna11   -- katanin p60 (ATPase-containing) subunit A1 89.21(n)
    93.48(a)
    292464  NM_001004217.2  NP_001004217.1 
    mouse
    (Mus musculus)
    Katna11, 5 105
    katanin p60 (ATPase-containing) subunit A11, 5 88.66(n)1
    93.08(a)1
    239241  NM_011835.11  NP_035965.11 
     AA9586495  AF1531975  (see all 10)
    About this table        Species with no ortholog for KATNA1

    ENSEMBL Gene Tree for KATNA1
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for KATNA1 gene
    KATNAL12  KATNAL22  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/255 NCBI SNPs in KATNA1 are shown (see all 255 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 35)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 6 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs90271,2
    A,C,F,H149957750(-) TTTTTT/AAAAAA 1 -- ng513Minor allele frequency- A:0.17EA WA 260
    rs96890841,2
    A,C,F,H150002477(+) AAAAAA/GTTCCC 1 -- ng314Minor allele frequency- G:0.44EU EA WA 414
    rs77402781,2
    A,C,F,H150002945(+) agttaT/Cgctat 1 -- ng314Minor allele frequency- C:0.42EU EA WA 418
    rs98005801,2
    A,C,F,H149995674(+) CTGTCT/CAGTTT 1 L/L syn1 ese34Minor allele frequency- C:0.42EU EA WA 418
    rs20645201,2
    A,C,F,H,O149966479(+) TGTCAT/ACTCAT 1 -- int117Minor allele frequency- A:0.40MN EU EA WA NA 1594
    rs93221931,2
    A,C,F,H149960836(+) CTGTGG/TGTGGC 1 -- int14Minor allele frequency- T:0.32EU EA WA 416
    rs97660371,2
    A,C,F,H149979750(+) tcaacC/Aaatga 1 -- int18Minor allele frequency- A:0.42EU EA WA 836
    rs37779491,2
    A,C,F,H149958850(-) AATGAT/CTGTGA 1 -- int112Minor allele frequency- C:0.35EA EU WA NA 1704
    rs93222001,2
    A,C,F,H149992907(+) CACCTA/GCAACT 1 -- int14Minor allele frequency- G:0.42EU EA WA 414
    rs97668861,2
    A,C,F,H149999877(+) AATTTC/TTGTTA 1 -- int14Minor allele frequency- T:0.42EU EA WA 420
    About this table

    HapMap Linkage Disequilibrium images for KATNA1 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 606696

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/23 PubMed articles for KATNA1 gene (see all 23 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 11104 HGNC: 6216 AceView: KATNA1 Ensembl:ENSG00000186625 euGenes: HUgn11104
    ECgene: KATNA1 H-InvDB: KATNA1
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

      --
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for KATNA1:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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