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Aliases for KARSP2 Gene

Subcategory (RNA class) for KARSP2 Gene

lncRNA

Aliases for KARSP2 Gene

  • Lysyl-TRNA Synthetase Pseudogene 2 2 3 5

External Ids for KARSP2 Gene

ORGUL Members for KARSP2 Gene

Previous GeneCards Identifiers for KARSP2 Gene

  • GC13P113785

Summaries for KARSP2 Gene

GeneCards Summary for KARSP2 Gene

KARSP2 (Lysyl-TRNA Synthetase Pseudogene 2) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for KARSP2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KARSP2 Gene

Genomics for KARSP2 Gene

GeneHancer (GH) Regulatory Elements for KARSP2 Gene

Promoters and enhancers for KARSP2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I113130 Enhancer 0.3 Ensembl 550.8 -0.2 -215 0.4 ZBTB33 KARSP2 F10-AS1 F10 GC13M113076
GH13I113151 Enhancer 1.4 FANTOM5 Ensembl ENCODE 11 +23.1 23116 3.6 MLX ARNT ZFP64 ARID4B DMAP1 ZNF48 YY1 GLIS2 ZNF202 SP5 PROZ LOC102724474 PCID2 TUBGCP3 KARSP2 F10-AS1 F10 DCUN1D2-AS CUL4A ATP11A
GH13I113182 Enhancer 1.4 Ensembl ENCODE dbSUPER 11 +55.8 55825 6.5 HDGF PKNOX1 FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 SLC30A9 FOS PROZ CUL4A PCID2 KARSP2 F10-AS1 F10 GRTP1 F7 LAMP1 ENSG00000269356
GH13I113021 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.4 -107.5 -107457 2.5 PKNOX1 FOXA2 MLX ARID4B DMAP1 ZNF48 ETS1 YY1 FOS RXRA MCF2L MCF2L-AS1 F7 PROZ F10 F10-AS1 KARSP2 ENSG00000269376 PIR52168
GH13I113175 Enhancer 1 Ensembl ENCODE dbSUPER 11.2 +48.1 48056 5.7 USF1 JUN ZIC2 JUND ZFHX2 POLR2A FOS EGR2 CHD2 PROZ PCID2 CUL4A KARSP2 F10-AS1 F10 F7 GRTP1 GRTP1-AS1 ENSG00000269356
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around KARSP2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for KARSP2 Gene

Genomic Locations for KARSP2 Gene
chr13:113,130,416-113,132,054
(GRCh38/hg38)
Size:
1,639 bases
Orientation:
Plus strand
chr13:113,784,730-113,786,368
(GRCh37/hg19)

Genomic View for KARSP2 Gene

Genes around KARSP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KARSP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KARSP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KARSP2 Gene

Proteins for KARSP2 Gene

Post-translational modifications for KARSP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KARSP2 Gene

Domains & Families for KARSP2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KARSP2 Gene

Function for KARSP2 Gene

Phenotypes From GWAS Catalog for KARSP2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KARSP2 Gene

Localization for KARSP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KARSP2 Gene

Pathways & Interactions for KARSP2 Gene

SuperPathways for KARSP2 Gene

No Data Available

Interacting Proteins for KARSP2 Gene

Gene Ontology (GO) - Biological Process for KARSP2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KARSP2 Gene

Drugs & Compounds for KARSP2 Gene

No Compound Related Data Available

Transcripts for KARSP2 Gene

mRNA/cDNA for KARSP2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for KARSP2 Gene

No ASD Table

Relevant External Links for KARSP2 Gene

GeneLoc Exon Structure for
KARSP2
ECgene alternative splicing isoforms for
KARSP2

Expression for KARSP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KARSP2 Gene

mRNA differential expression in normal tissues according to GTEx for KARSP2 Gene

This gene is overexpressed in Testis (x25.7) and Liver (x5.4).

NURSA nuclear receptor signaling pathways regulating expression of KARSP2 Gene:

KARSP2
genes like me logo Genes that share expression patterns with KARSP2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KARSP2 Gene

Orthologs for KARSP2 Gene

Evolution for KARSP2 Gene

ENSEMBL:
Gene Tree for KARSP2 (if available)
TreeFam:
Gene Tree for KARSP2 (if available)

No data available for Orthologs for KARSP2 Gene

Paralogs for KARSP2 Gene

No data available for Paralogs for KARSP2 Gene

Variants for KARSP2 Gene

Additional Variant Information for KARSP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KARSP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KARSP2 Gene

Disorders for KARSP2 Gene

No disorders were found for KARSP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for KARSP2 Gene

Publications for KARSP2 Gene

No publications were found for KARSP2 Gene.

Products for KARSP2 Gene

Sources for KARSP2 Gene

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