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Aliases for KARSP1 Gene

Aliases for KARSP1 Gene

  • Lysyl-TRNA Synthetase Pseudogene 1 2 3 5

External Ids for KARSP1 Gene

Previous GeneCards Identifiers for KARSP1 Gene

  • GC13P042500

Summaries for KARSP1 Gene

GeneCards Summary for KARSP1 Gene

KARSP1 (Lysyl-TRNA Synthetase Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KARSP1 Gene

Genomics for KARSP1 Gene

Regulatory Elements for KARSP1 Gene

Enhancers for KARSP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F041928 0.2 Ensembl 0.8 +3.1 3129 1.0 RNU6-74P MIR5006 VWA8 KARSP1 VWA8-AS1
GH13F041915 1.2 Ensembl ENCODE 0.4 -8.8 -8821 3.3 ATF1 TBL1XR1 INSM2 BMI1 FEZF1 ZNF366 CBX5 SCRT2 ETV6 FOS VWA8 MIR5006 KARSP1 RNU6-74P
GH13F041919 0.6 Ensembl 0.4 -6.1 -6072 0.6 ZNF493 GLIS1 ZNF600 NR3C1 VWA8 MIR5006 KARSP1 RNU6-74P
GH13F041935 0.5 FANTOM5 0.4 +10.2 10201 0.0 MIR5006 VWA8 KARSP1 VWA8-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around KARSP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for KARSP1 Gene

Chromosome:
13
Start:
41,925,572 bp from pter
End:
41,927,525 bp from pter
Size:
1,954 bases
Orientation:
Plus strand

Genomic View for KARSP1 Gene

Genes around KARSP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KARSP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KARSP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KARSP1 Gene

Proteins for KARSP1 Gene

Post-translational modifications for KARSP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KARSP1 Gene

Domains & Families for KARSP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KARSP1 Gene

Function for KARSP1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KARSP1 Gene

Localization for KARSP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KARSP1 Gene

Pathways & Interactions for KARSP1 Gene

SuperPathways for KARSP1 Gene

No Data Available

Interacting Proteins for KARSP1 Gene

Gene Ontology (GO) - Biological Process for KARSP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KARSP1 Gene

Transcripts for KARSP1 Gene

mRNA/cDNA for KARSP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for KARSP1 Gene

No ASD Table

Relevant External Links for KARSP1 Gene

GeneLoc Exon Structure for
KARSP1
ECgene alternative splicing isoforms for
KARSP1

Expression for KARSP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for KARSP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of KARSP1 Gene:

KARSP1
genes like me logo Genes that share expression patterns with KARSP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for KARSP1 Gene

Orthologs for KARSP1 Gene

Evolution for KARSP1 Gene

ENSEMBL:
Gene Tree for KARSP1 (if available)
TreeFam:
Gene Tree for KARSP1 (if available)

No data available for Orthologs for KARSP1 Gene

Paralogs for KARSP1 Gene

No data available for Paralogs for KARSP1 Gene

Variants for KARSP1 Gene

Relevant External Links for KARSP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KARSP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for KARSP1 Gene

Disorders for KARSP1 Gene

No disorders were found for KARSP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for KARSP1 Gene

Publications for KARSP1 Gene

No publications were found for KARSP1 Gene.

Products for KARSP1 Gene

Sources for KARSP1 Gene

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