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Aliases & Descriptions for KARS
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases EC 6.1.1.6 3 KARS2 1 , 2 KIAA0070 2 , 3 KRS 2 LysRS 3
Descriptions Lysine--tRNA ligase 3 lysine tRNA ligase 2 lysyl-tRNA synthetase 2
Search outside databases for aliases for KARS genePrevious GC identifers: GC16M066591 GC16M076622 GC16M075400 GC16M075442 GC16M075443
Summaries for KARS (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for KARS : Aminoacyl-tRNA synthetases are a class of enzymes that charge tRNAs with their cognate amino acids.Lysyl-tRNA synthetase is a homodimer localized to the cytoplasm which belongs to the class IIfamily of tRNA synthetases. It has been shown to be a target of autoantibodies in the humanautoimmune diseases, polymyositis or dermatomyositis. Alternatively spliced transcript variantsencoding different isoforms have been found for this gene. [provided by RefSeq] Gene Wiki entry for KARS
Genomic Location for KARS
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the KARS gene Entrez Gene cytogenetic band: 16q23-q24 Ensembl cytogenetic band: 16q23.1 HGNC cytogenetic band: 16q23.1 KARS Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 16 GeneLoc Exon Structure
GeneLoc location for GC16M074219:
(about GC identifiers )
Start:
74,219,123 bp from pter
End:
74,239,078 bp from pter
Size:
19,956 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000016.8 NT_010498.15 Proteins for KARS
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: SYK_HUMAN, Q15046 (See
protein sequence )Recommended Name: Lysyl-tRNA synthetase Size : 597 amino acids; 68048 Da
Subunit : Homodimer (By similarity); also part of a multisubunit complex that groups tRNA ligasesfor Arg, Asp, Glu, Gln, Ile, Leu, Lys, Met and Pro
Subcellular location : Cytoplasm
PDB structures from and Proteopedia : 3BJU (3D)
 
Secondary accessions : O14946 Q96J25
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001123561.1 NP_005539.1 ENSEMBL proteins: ENSP00000303043 ENSP00000367937 ENSP00000377053 ENSP00000325448 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: KARS 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for KARS: Assays for KARS:
Protein
Domains/ Families for KARS(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q15046 ProtoNet protein and cluster: Q15046
3 Blocks protein families : IPB002313 Lysyl-tRNA synthetase signature IPB004364 tRNA synthetase IPB004365 OB-fold nucleic acid binding domain UniProtKB/Swiss-Prot: SYK_HUMAN, Q15046 Similarity : Belongs to the class-II aminoacyl-tRNA synthetase family
Gene Function for KARS
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001130089 Applied Biosystems Silencer ® siRNAs for KARS Sigma-Aldrich siRNA for KARS Sigma-Aldrich shRNA for KARS Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001130089                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001130089                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001130089  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001130089 UniProtKB/Swiss-Prot: SYK_HUMAN, Q15046 Catalytic activity : ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys)Enzyme Number (IUBMB): EC 6.1.1.6
Genatlas biochemistry entry for KARS :lysyl-tRNA synthetase,target of autoantibodies in the autoimmune diseasepolymyositis/dermatomyositis 5 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for KARS
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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3 Sigma-Aldrich "Your Favorite Gene" Pathways for KARS (Your Favorite Gene powered by Ingenuity) 5/198 Interacting proteins for KARS (ENSP00000325448 3 Q15046 2 ) via UniProtKB, MINT, and/or STRING (see all 198
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006430 lysyl-tRNA aminoacylation
IEA --
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Drugs & Compounds for KARS (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for KARS 10/14 Novoseek chemical compound relationships for KARS gene (see all 14
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
trna(lys)
87.28
48
15183344 (5), 10387054 (4), 14722314 (4), 12941890 (3) (see all 5 )
aminoacyl-trna
84.99
7
12438642 (1), 12766171 (1), 18839981 (1), 15220430 (1) (see all 5 )
trna
67.80
48
11706011 (6), 12766171 (5), 12417586 (4), 9278442 (3) (see all 10 )
atpa
67.40
1
18793656 (1)
anticodon
66.60
9
10572184 (2), 11884398 (2), 12766171 (2), 17661445 (1) (see all 5 )
trna(asp)
66.50
2
12766171 (1)
lysine
39.20
4
14747465 (1), 9278442 (1), 17158446 (1)
acetic acid
15.93
1
18793656 (1)
ornithine
11.37
1
10387054 (1)
leucine
10.26
2
10387054 (1)
About this table
Transcripts for KARS(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001130089 Sigma-Aldrich siRNA for KARS Sigma-Aldrich shRNA for KARS Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001130089 NM_005548
REFSEQ mRNAs for KARS gene (2 alternative transcripts): NM_001130089.1 NM_005548.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001130089 NM_005548
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001130089                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001130089                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001130089  
Additional cDNA sequence: AF285758.1 AK126584.1 AK309168.1 AK315687.1 BC004132.2 BC013246.1 CR593300.1 CR601961.1 CR604139.1 CR608423.1 CR611117.1 CR617122.1 CR622561.1 D31890.1 D32053.1
20 DOTS entries : DT.119914 DT.100664559 DT.100697984 DT.100664561 DT.100664562 DT.95167502 DT.100865562 DT.120666383 DT.97861075 DT.100876632 DT.120666394 DT.120666406 DT.100641124 DT.92453824 DT.100664555 DT.100664566 DT.120666478 DT.120666497 DT.92453826 DT.92453829
24/756 AceView cDNA sequences (see all 756
):BE267194 AA348232 AA311010 BM973347 BM764905 BM789308 BM454229 AA295192 BQ723634 AU099501 BU733958 BM794146 BM927632 AW328170 BU183314 CB045163 BM741726 AA599607 AI934833 CB159286 BM796004 BF971382 BQ006238 BM451994
highest scoring ESTs for KARS :AA149692 AA322826 AF285758 AL037552 AL037575 AL514978 AL515661 AL516675 AL526819 AL546307
Unigene Cluster for KARS: Lysyl-tRNA synthetase Hs.3100 [show with all ESTs ] Unigene Representative Sequence: NM_001130089 GeneLoc Exon Structure 5/16 Alternative Splicing Database (ASD) splice patterns (SP) for KARS (see all 16
) ExUns: 1 ^ 2a · 2b · 2c · 2d · 2e ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b · 9c ^ 10a · 10b ^ 11a · 11b · 11c ^ 12a · 12b ^ SP1 :           -     -                                       SP2 :           -   -   -                                       SP3 :           -     -       -   -                               SP4 :           -   -                                         SP5 :                                                    
ExUns: 13a · 13b ^ 14 ^ 15 ^ 16a · 16b ^ 17a · 17b · 17c · 17d SP1 :         -             SP2 :         -             SP3 :                     SP4 :                     SP5 :                    
About this scheme ECgene alternative splicing isoforms for KARS 4 Ensembl transcripts including schematic representations : ENST00000302445
ENST00000378668
ENST00000393395
ENST00000319410
Expression for KARS
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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KARS expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for KARS 1 / 2 / 3
5 probe-sets matching KARS gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AAACCCGAAGSOURCE GeneReport for Unigene cluster: Hs.3100 Expression variation in blood from EXPOLDB for KARS
Orthologs for KARS
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for KARS gene from 5/27 species (see all 27
)
About this table Species with no ortholog for KARS ENSEMBL Gene Tree for KARS Paralogs for KARS (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for KARS gene DARS2 2 Pseudogenes 2 related pseudogenes
SNPs/Variants for KARS (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for KARS (up to first 250kb)
Disorders & Mutations for KARS
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 601421 2 Novoseek disease relationships for KARS gene
About this table 1 PharmGKB disease relationship for KARS gene About this table
Medical News for KARS (Possibly Related Articles in
Doctor's Guide )
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--
Publications for KARS (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/121 PubMed articles for KARS gene (see all 121
): Human lysyl-tRNA synthetase accepts nucleotide 73 variants and rescues Escherichia coli double-defective mutant. (PubMed id 9278442) 1, 2, 3, 4 Shiba K....Schimmel P. (1997) Assignment of two human autoantigen genes-isoleucyl-tRNA synthetase locates to 9q21 and lysyl-tRNA synthetase locates to 16q23-q24. (PubMed id 8812440) 1, 2, 3 Nichols R.C....Liu P. (1996) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Prediction of the coding sequences of unidentified human genes. II. The coding sequences of 40 new genes (KIAA0041-KIAA0080) deduced by analysis of cDNA clones from human cell line KG-1. (PubMed id 7584044) 3, 4 Nomura N....Tabata S. (1994) Cellular distribution of Lysyl-tRNA synthetase and its interaction with Gag during human immunodeficiency virus type 1 assembly. (PubMed id 15220430) 1, 3 Halwani R....Kleiman L. (2004) The interaction between HIV-1 Gag and human lysyl-tRNA synthetase during viral assembly. (PubMed id 12756246) 1, 3 Javanbakht H....Kleiman L. (2003) Critical role of helix 4 of HIV-1 capsid C-terminal domain in interactions with human lysyl-tRNA synthetase. (PubMed id 17724017) 1, 3 Kovaleski B.J....Musier-Forsyth K. (2007) Inhibition of cellular HIV-1 protease activity by lysyl-tRNA synthetase. (PubMed id 15888436) 1, 3 Guo F....Kleiman L. (2005) In vitro characterization of the interaction between HIV-1 Gag and human lysyl-tRNA synthetase. (PubMed id 16702215) 1, 3 Kovaleski B.J....Musier-Forsyth K. (2006) Incorporation of lysyl-tRNA synthetase into human immunodeficiency virus type 1. (PubMed id 11333884) 1, 3 Cen S....Kleiman L. (2001)
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Genome Databases showing KARS
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing KARS
(According to HUGE )
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Specialized Databases showing KARS (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for KARS (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for KARS:
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