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Aliases for KANSL1-AS1 Gene

Subcategory (RNA class) for KANSL1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for KANSL1-AS1 Gene

  • KANSL1 Antisense RNA 1 2 3 5
  • KANSL1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for KANSL1-AS1 Gene

Previous GeneCards Identifiers for KANSL1-AS1 Gene

  • GC17P044271

Summaries for KANSL1-AS1 Gene

GeneCards Summary for KANSL1-AS1 Gene

KANSL1-AS1 (KANSL1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KANSL1-AS1 Gene

Genomics for KANSL1-AS1 Gene

Regulatory Elements for KANSL1-AS1 Gene

Enhancers for KANSL1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F046769 1.7 FANTOM5 Ensembl ENCODE 77.7 +578.1 578130 4.6 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 PAF1 KANSL1-AS1 ENSG00000262539 ARL17A WNT3 WNT9B ENSG00000253347 GOSR2 MRPL45P2 NSFP1 RPS7P11
GH17F046741 1.3 Ensembl ENCODE 74 +549.1 549146 2.6 ZNF493 ZFP64 SIN3A FEZF1 ZNF2 ZNF121 GLIS2 KLF7 FOS ZNF202 MRPL45P2 ARL17B LOC102724391 KANSL1-AS1 KANSL1 RPS7P11 ENSG00000253347 NSFP1 RPS2P47 WNT3
GH17F046764 1.1 Ensembl ENCODE 77.7 +571.5 571496 1.7 LEF1 PKNOX1 TAL1 UBTF ZIC2 ZBTB48 POLR2A NCOR1 FOS NFE2 KANSL1-AS1 RPS7P11 WNT3 LOC101929777
GH17F046782 0.9 ENCODE 67.5 +588.9 588857 0.2 ELF3 PKNOX1 CBX3 SIN3A ARID4B ZNF48 ZBTB40 ZNF2 RAD21 HSF1 KANSL1-AS1 WNT3 WNT9B LOC102724391 LOC101929777 RPS7P11
GH17F045582 1.5 FANTOM5 ENCODE 31.2 -609.0 -609029 4.3 HDGF PKNOX1 WRNIP1 ARID4B SIN3A YBX1 FEZF1 DMAP1 ZNF2 YY1 CRHR1-IT1 LRRC37A4P KANSL1-AS1 LRRC37A2 ARL17B PLEKHM1 ACBD4 FMNL1 DND1P1 PIR53158
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KANSL1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for KANSL1-AS1 Gene

Chromosome:
17
Start:
46,193,573 bp from pter
End:
46,196,723 bp from pter
Size:
3,151 bases
Orientation:
Plus strand

Genomic View for KANSL1-AS1 Gene

Genes around KANSL1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KANSL1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KANSL1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KANSL1-AS1 Gene

Proteins for KANSL1-AS1 Gene

Post-translational modifications for KANSL1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KANSL1-AS1 Gene

Domains & Families for KANSL1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KANSL1-AS1 Gene

Function for KANSL1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KANSL1-AS1 Gene

Localization for KANSL1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for KANSL1-AS1 Gene

Pathways & Interactions for KANSL1-AS1 Gene

SuperPathways for KANSL1-AS1 Gene

No Data Available

Interacting Proteins for KANSL1-AS1 Gene

Gene Ontology (GO) - Biological Process for KANSL1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KANSL1-AS1 Gene

Transcripts for KANSL1-AS1 Gene

mRNA/cDNA for KANSL1-AS1 Gene

(5) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KANSL1-AS1 Gene

KANSL1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for KANSL1-AS1 Gene

No ASD Table

Relevant External Links for KANSL1-AS1 Gene

GeneLoc Exon Structure for
KANSL1-AS1
ECgene alternative splicing isoforms for
KANSL1-AS1

Expression for KANSL1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for KANSL1-AS1 Gene

SOURCE GeneReport for Unigene cluster for KANSL1-AS1 Gene:

Hs.644600
genes like me logo Genes that share expression patterns with KANSL1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for KANSL1-AS1 Gene

Orthologs for KANSL1-AS1 Gene

Evolution for KANSL1-AS1 Gene

ENSEMBL:
Gene Tree for KANSL1-AS1 (if available)
TreeFam:
Gene Tree for KANSL1-AS1 (if available)

No data available for Orthologs for KANSL1-AS1 Gene

Paralogs for KANSL1-AS1 Gene

No data available for Paralogs for KANSL1-AS1 Gene

Variants for KANSL1-AS1 Gene

Sequence variations from dbSNP and Humsavar for KANSL1-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs796052591 Likely benign 46,192,419(-) TGCAC(C/G)GTTTG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1048333 -- 46,196,553(-) CTCTC(C/T)ATTCC intron-variant, nc-transcript-variant
rs1048343 -- 46,196,523(+) GCAAG(C/T)CTGAA intron-variant, nc-transcript-variant
rs11079733 -- 46,192,598(+) GCTCC(A/T)GGGGA intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs111394655 -- 46,192,144(+) ATTGG(A/G)AAACG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for KANSL1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv575246 CNV gain+loss 21841781
nsv575247 CNV loss 21841781
nsv821687 CNV gain 15273396
nsv833461 CNV gain 17160897
nsv833462 CNV gain 17160897
nsv953910 CNV duplication 24416366
nsv9564 CNV gain+loss 18304495
nsv575241 CNV gain 21841781
nsv575228 CNV gain 21841781
nsv575225 CNV loss 21841781
nsv516807 CNV gain+loss 19592680
nsv514850 CNV gain 21397061
nsv471698 CNV gain+loss 15918152
nsv471492 CNV gain 19718026
nsv470589 CNV gain 18288195
nsv469697 CNV gain+loss 16826518
nsv457748 CNV loss 19166990
nsv442748 CNV gain 18776908
nsv433449 CNV gain 18776910
nsv1160492 CNV duplication 26073780
nsv1146669 OTHER inversion 26484159
nsv1133407 CNV deletion 24896259
nsv1072740 CNV deletion 25765185
nsv1063349 CNV gain 25217958
nsv1060392 CNV gain+loss 25217958
nsv1057963 CNV gain 25217958
esv3893022 CNV gain 25118596
esv3584940 CNV gain 24956385
esv3582747 CNV loss 25503493
esv3573565 CNV gain 25503493
esv3400637 CNV duplication 20981092
esv3352396 CNV duplication 20981092
esv33048 CNV gain+loss 17666407
esv29962 CNV loss 17803354
esv29951 CNV gain 18421352
esv2762433 CNV gain+loss 21179565
esv2760451 CNV gain+loss 21179565
esv2758692 CNV gain+loss 17122850
esv2751686 CNV gain 17911159
esv2422002 CNV duplication 20811451
esv21783 CNV gain+loss 19812545
dgv945e212 CNV loss 25503493
dgv943e212 CNV gain 25503493
dgv941e212 CNV loss 25503493
dgv940e212 CNV loss 25503493
dgv939e212 CNV gain 25503493
dgv938e212 CNV gain 25503493
dgv5640n54 CNV loss 21841781
dgv5639n54 CNV gain 21841781
dgv5638n54 CNV gain 21841781
dgv5637n54 CNV gain 21841781
dgv5636n54 CNV loss 21841781
dgv5635n54 CNV loss 21841781
dgv5634n54 CNV loss 21841781
dgv5633n54 CNV loss 21841781
dgv5631n54 CNV loss 21841781
dgv5630n54 CNV gain 21841781
dgv5628n54 CNV loss 21841781
dgv5627n54 CNV loss 21841781
dgv5625n54 CNV loss 21841781
dgv5624n54 CNV loss 21841781
dgv5623n54 CNV loss 21841781
dgv5622n54 CNV loss 21841781
dgv5621n54 CNV gain+loss 21841781
dgv5620n54 CNV gain 21841781
dgv5619n54 CNV gain+loss 21841781
dgv5618n54 CNV gain 21841781
dgv5617n54 CNV gain 21841781
dgv367n27 CNV gain 19166990
dgv366n27 CNV gain 19166990
dgv3242n100 CNV gain+loss 25217958
dgv3241n100 CNV loss 25217958
dgv3240n100 CNV gain 25217958
dgv3239n100 CNV gain 25217958
dgv3238n100 CNV gain 25217958
dgv3237n100 CNV loss 25217958
dgv3236n100 CNV loss 25217958
dgv3235n100 CNV loss 25217958
dgv3234n100 CNV gain+loss 25217958
dgv3233n100 CNV gain 25217958
dgv3232n100 CNV loss 25217958
dgv3231n100 CNV gain 25217958
dgv3230n100 CNV loss 25217958
dgv3229n100 CNV loss 25217958
dgv3222n100 CNV loss 25217958
dgv3221n100 CNV gain+loss 25217958
dgv3219n100 CNV gain 25217958
dgv3217n100 CNV loss 25217958
dgv3216n100 CNV loss 25217958
dgv3214n100 CNV gain+loss 25217958
dgv3213n100 CNV gain+loss 25217958
dgv3210n100 CNV loss 25217958
dgv3209n100 CNV gain 25217958
dgv3208n100 CNV loss 25217958
dgv3207n100 CNV loss 25217958
dgv3206n100 CNV loss 25217958
dgv3204n100 CNV gain 25217958
dgv3203n100 CNV gain+loss 25217958
dgv3202n100 CNV gain 25217958
dgv3201n100 CNV gain 25217958
dgv3200n100 CNV loss 25217958
dgv3199n100 CNV loss 25217958
dgv3198n100 CNV loss 25217958
dgv3196n100 CNV gain+loss 25217958
dgv3195n100 CNV gain+loss 25217958
dgv3194n100 CNV loss 25217958
dgv3192n100 CNV loss 25217958
dgv3190n100 CNV gain 25217958
dgv3189n100 CNV gain 25217958
dgv3188n100 CNV gain 25217958
dgv3185n100 CNV gain 25217958
dgv3184n100 CNV gain 25217958
dgv3182n100 CNV gain 25217958
dgv3181n100 CNV gain 25217958
dgv3180n100 CNV gain 25217958
dgv25n64 CNV gain 17921354
dgv1765e59 CNV duplication 20981092
dgv131e55 CNV loss 17911159
dgv130e55 CNV gain 17911159
dgv129e55 CNV loss 17911159
dgv128e55 CNV gain 17911159
dgv127e55 CNV gain 17911159

Relevant External Links for KANSL1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
KANSL1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KANSL1-AS1 Gene

Disorders for KANSL1-AS1 Gene

Relevant External Links for KANSL1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KANSL1-AS1

No disorders were found for KANSL1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KANSL1-AS1 Gene

Publications for KANSL1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for KANSL1-AS1 Gene

Sources for KANSL1-AS1 Gene

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