Free for academic non-profit institutions. Other users need a Commercial license

Aliases for KANSL1-AS1 Gene

Subcategory (RNA class) for KANSL1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for KANSL1-AS1 Gene

  • KANSL1 Antisense RNA 1 2 3 5
  • KANSL1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for KANSL1-AS1 Gene

Previous GeneCards Identifiers for KANSL1-AS1 Gene

  • GC17P044271

Summaries for KANSL1-AS1 Gene

GeneCards Summary for KANSL1-AS1 Gene

KANSL1-AS1 (KANSL1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for KANSL1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KANSL1-AS1 Gene

Genomics for KANSL1-AS1 Gene

Regulatory Elements for KANSL1-AS1 Gene

Enhancers for KANSL1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H046769 1.7 FANTOM5 Ensembl ENCODE 77.7 +578.1 578130 4 FOXA2 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 KANSL1-AS1 ENSG00000262539 ARL17A WNT3 ENSG00000253347 WNT9B GOSR2 MRPL45P2 NSFP1 RPS7P11
GH17H046764 1.1 Ensembl ENCODE 77.7 +571.5 571496 1 PKNOX1 TCF12 FOS CREM SMAD5 CEBPB REST ZNF592 NFIC MTA1 KANSL1-AS1 RPS7P11 LOC101929777 WNT3
GH17H046741 1.1 Ensembl ENCODE 74 +549.1 549146 2 NFIB ZNF473 KLF17 ZNF195 GLIS2 EGR1 ZNF350 FOS CREM SMARCC1 KANSL1-AS1 ARL17B ENSG00000253347 ARL17A LRRC37A17P MRPL45P2 NSFP1 EFCAB13 RPS7P11 WNT3
GH17H046782 0.9 ENCODE 67.5 +588.9 588857 0 ELF3 PKNOX1 ATF1 RB1 ARID4B ZBTB40 ZNF2 RAD21 HSF1 ZNF143 KANSL1-AS1 WNT3 WNT9B EFCAB13 ENSG00000262372 LOC101929777 RPS7P11
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KANSL1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for KANSL1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000095038 -873 3801 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 SP3 ZNF610 GLIS1 RCOR2

Genomic Location for KANSL1-AS1 Gene

46,193,573 bp from pter
46,196,723 bp from pter
3,151 bases
Plus strand

Genomic View for KANSL1-AS1 Gene

Genes around KANSL1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KANSL1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KANSL1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KANSL1-AS1 Gene

Proteins for KANSL1-AS1 Gene

Post-translational modifications for KANSL1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for KANSL1-AS1 Gene

Domains & Families for KANSL1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for KANSL1-AS1 Gene

Function for KANSL1-AS1 Gene

Phenotypes From GWAS Catalog for KANSL1-AS1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for KANSL1-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for KANSL1-AS1 Gene

Localization for KANSL1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for KANSL1-AS1 Gene

Pathways & Interactions for KANSL1-AS1 Gene

SuperPathways for KANSL1-AS1 Gene

No Data Available

Interacting Proteins for KANSL1-AS1 Gene

Gene Ontology (GO) - Biological Process for KANSL1-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for KANSL1-AS1 Gene

Drugs & Compounds for KANSL1-AS1 Gene

No Compound Related Data Available

Transcripts for KANSL1-AS1 Gene

mRNA/cDNA for KANSL1-AS1 Gene

(5) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for KANSL1-AS1 Gene

KANSL1 antisense RNA 1:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for KANSL1-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for KANSL1-AS1 Gene

No ASD Table

Relevant External Links for KANSL1-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for KANSL1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for KANSL1-AS1 Gene

SOURCE GeneReport for Unigene cluster for KANSL1-AS1 Gene:

genes like me logo Genes that share expression patterns with KANSL1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for KANSL1-AS1 Gene

Orthologs for KANSL1-AS1 Gene

Evolution for KANSL1-AS1 Gene

Gene Tree for KANSL1-AS1 (if available)
Gene Tree for KANSL1-AS1 (if available)

No data available for Orthologs for KANSL1-AS1 Gene

Paralogs for KANSL1-AS1 Gene

No data available for Paralogs for KANSL1-AS1 Gene

Variants for KANSL1-AS1 Gene

Sequence variations from dbSNP and Humsavar for KANSL1-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs144753624 Likely benign 46,192,736(+) CAAAG(A/G)GAGAG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs180814097 Likely benign 46,192,539(+) TTCTT(C/T)AGGCC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs534448299 Likely benign 46,192,766(+) AGAGC(-/GAG)GAGAA intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs796052591 Likely benign 46,192,419(-) TGCAC(C/G)GTTTG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1057516026 Uncertain significance 46,192,804(-) CTGCT(C/G)CTCTC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for KANSL1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv127e55 CNV gain 17911159
dgv128e55 CNV gain 17911159
dgv129e55 CNV loss 17911159
dgv130e55 CNV gain 17911159
dgv131e55 CNV loss 17911159
dgv1765e59 CNV duplication 20981092
dgv25n64 CNV gain 17921354
dgv3180n100 CNV gain 25217958
dgv3181n100 CNV gain 25217958
dgv3182n100 CNV gain 25217958
dgv3184n100 CNV gain 25217958
dgv3185n100 CNV gain 25217958
dgv3188n100 CNV gain 25217958
dgv3189n100 CNV gain 25217958
dgv3190n100 CNV gain 25217958
dgv3192n100 CNV loss 25217958
dgv3194n100 CNV loss 25217958
dgv3195n100 CNV gain+loss 25217958
dgv3196n100 CNV gain+loss 25217958
dgv3198n100 CNV loss 25217958
dgv3199n100 CNV loss 25217958
dgv3200n100 CNV loss 25217958
dgv3201n100 CNV gain 25217958
dgv3202n100 CNV gain 25217958
dgv3203n100 CNV gain+loss 25217958
dgv3204n100 CNV gain 25217958
dgv3206n100 CNV loss 25217958
dgv3207n100 CNV loss 25217958
dgv3208n100 CNV loss 25217958
dgv3209n100 CNV gain 25217958
dgv3210n100 CNV loss 25217958
dgv3213n100 CNV gain+loss 25217958
dgv3214n100 CNV gain+loss 25217958
dgv3216n100 CNV loss 25217958
dgv3217n100 CNV loss 25217958
dgv3219n100 CNV gain 25217958
dgv3221n100 CNV gain+loss 25217958
dgv3222n100 CNV loss 25217958
dgv3229n100 CNV loss 25217958
dgv3230n100 CNV loss 25217958
dgv3231n100 CNV gain 25217958
dgv3232n100 CNV loss 25217958
dgv3233n100 CNV gain 25217958
dgv3234n100 CNV gain+loss 25217958
dgv3235n100 CNV loss 25217958
dgv3236n100 CNV loss 25217958
dgv3237n100 CNV loss 25217958
dgv3238n100 CNV gain 25217958
dgv3239n100 CNV gain 25217958
dgv3240n100 CNV gain 25217958
dgv3241n100 CNV loss 25217958
dgv3242n100 CNV gain+loss 25217958
dgv366n27 CNV gain 19166990
dgv367n27 CNV gain 19166990
dgv5617n54 CNV gain 21841781
dgv5618n54 CNV gain 21841781
dgv5619n54 CNV gain+loss 21841781
dgv5620n54 CNV gain 21841781
dgv5621n54 CNV gain+loss 21841781
dgv5622n54 CNV loss 21841781
dgv5623n54 CNV loss 21841781
dgv5624n54 CNV loss 21841781
dgv5625n54 CNV loss 21841781
dgv5627n54 CNV loss 21841781
dgv5628n54 CNV loss 21841781
dgv5630n54 CNV gain 21841781
dgv5631n54 CNV loss 21841781
dgv5633n54 CNV loss 21841781
dgv5634n54 CNV loss 21841781
dgv5635n54 CNV loss 21841781
dgv5636n54 CNV loss 21841781
dgv5637n54 CNV gain 21841781
dgv5638n54 CNV gain 21841781
dgv5639n54 CNV gain 21841781
dgv5640n54 CNV loss 21841781
dgv938e212 CNV gain 25503493
dgv939e212 CNV gain 25503493
dgv940e212 CNV loss 25503493
dgv941e212 CNV loss 25503493
dgv943e212 CNV gain 25503493
dgv945e212 CNV loss 25503493
esv21783 CNV gain+loss 19812545
esv2422002 CNV duplication 20811451
esv2751686 CNV gain 17911159
esv2758692 CNV gain+loss 17122850
esv2760451 CNV gain+loss 21179565
esv2762433 CNV gain+loss 21179565
esv29951 CNV gain 18421352
esv29962 CNV loss 17803354
esv33048 CNV gain+loss 17666407
esv3352396 CNV duplication 20981092
esv3400637 CNV duplication 20981092
esv3573565 CNV gain 25503493
esv3582747 CNV loss 25503493
esv3584940 CNV gain 24956385
esv3893022 CNV gain 25118596
nsv1057963 CNV gain 25217958
nsv1060392 CNV gain+loss 25217958
nsv1063349 CNV gain 25217958
nsv1072740 CNV deletion 25765185
nsv1133407 CNV deletion 24896259
nsv1146669 OTHER inversion 26484159
nsv1160492 CNV duplication 26073780
nsv433449 CNV gain 18776910
nsv442748 CNV gain 18776908
nsv457748 CNV loss 19166990
nsv469697 CNV gain+loss 16826518
nsv470589 CNV gain 18288195
nsv471492 CNV gain 19718026
nsv471698 CNV gain+loss 15918152
nsv514850 CNV gain 21397061
nsv516807 CNV gain+loss 19592680
nsv575225 CNV loss 21841781
nsv575228 CNV gain 21841781
nsv575241 CNV gain 21841781
nsv575246 CNV gain+loss 21841781
nsv575247 CNV loss 21841781
nsv821687 CNV gain 15273396
nsv833461 CNV gain 17160897
nsv833462 CNV gain 17160897
nsv953910 CNV duplication 24416366
nsv9564 CNV gain+loss 18304495

Relevant External Links for KANSL1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for KANSL1-AS1 Gene

Disorders for KANSL1-AS1 Gene

Relevant External Links for KANSL1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for KANSL1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KANSL1-AS1 Gene

Publications for KANSL1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 60

Products for KANSL1-AS1 Gene

Sources for KANSL1-AS1 Gene

Loading form....