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Aliases for KANK4 Gene

Aliases for KANK4 Gene

  • KN Motif And Ankyrin Repeat Domains 4 2 3 5
  • Ankyrin Repeat Domain-Containing Protein 38 3 4
  • Ankyrin Repeat Domain 38 2 3
  • ANKRD38 3 4
  • KN Motif And Ankyrin Repeat Domain-Containing Protein 4 3
  • Kidney Ankyrin Repeat-Containing Protein 4 3
  • DJ1078M7.1 3

External Ids for KANK4 Gene

Previous HGNC Symbols for KANK4 Gene

  • ANKRD38

Previous GeneCards Identifiers for KANK4 Gene

  • GC01M062474
  • GC01M062701
  • GC01M060814

Summaries for KANK4 Gene

GeneCards Summary for KANK4 Gene

KANK4 (KN Motif And Ankyrin Repeat Domains 4) is a Protein Coding gene. An important paralog of this gene is KANK1.

UniProtKB/Swiss-Prot for KANK4 Gene

  • May be involved in the control of cytoskeleton formation by regulating actin polymerization.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for KANK4 Gene

Genomics for KANK4 Gene

Regulatory Elements for KANK4 Gene

Enhancers for KANK4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F062356 1.5 FANTOM5 Ensembl ENCODE 17.2 -37.3 -37287 0.6 ZFP64 ZNF493 INSM2 KLF17 ZEB1 ZNF155 ZNF366 ZNF143 FOS ZNF680 USP1 KANK4 ENSG00000271200 TM2D1 LOC105378768
GH01F062232 1 FANTOM5 Ensembl ENCODE 14.7 +86.4 86356 0.4 POLR2A ZFP64 USP1 KANK4 L1TD1 GC01M062237 GC01P062219
GH01F062271 0.8 Ensembl ENCODE 17.7 +47.1 47125 1.4 CTCF PBX2 ETV1 HLF MAX FOXP2 GABPA KANK4 RNU6-371P L1TD1 GC01M062299 GC01M062237
GH01F062285 1.1 Ensembl ENCODE 12.1 +32.7 32747 1.5 ELF3 ARID4B RAD21 RARA MXD4 NR2F2 KAT8 TGIF2 SSRP1 ETV4 KANK4 L1TD1 GC01M062299 GC01M062237
GH01F062288 0.6 ENCODE 12.1 +31.0 30971 0.2 ZNF316 TEAD1 NR2F6 RARA TEAD3 KANK4 L1TD1 GC01M062299 GC01M062237
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around KANK4 on UCSC Golden Path with GeneCards custom track

Promoters for KANK4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001520969 214 801 HDAC1 SIN3A ARID4B ZNF335 ZNF366 SP5 ZBTB11 CEBPB POLR2H SMARCA4

Genomic Location for KANK4 Gene

Chromosome:
1
Start:
62,236,165 bp from pter
End:
62,319,414 bp from pter
Size:
83,250 bases
Orientation:
Minus strand

Genomic View for KANK4 Gene

Genes around KANK4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
KANK4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for KANK4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for KANK4 Gene

Proteins for KANK4 Gene

  • Protein details for KANK4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T7N3-KANK4_HUMAN
    Recommended name:
    KN motif and ankyrin repeat domain-containing protein 4
    Protein Accession:
    Q5T7N3
    Secondary Accessions:
    • B1ALP7
    • Q6P9A0
    • Q86T71
    • Q86VE6
    • Q8NAX3

    Protein attributes for KANK4 Gene

    Size:
    995 amino acids
    Molecular mass:
    107342 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for KANK4 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for KANK4 Gene

Post-translational modifications for KANK4 Gene

  • Ubiquitination at Lys 642
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for KANK4 Gene

Domains & Families for KANK4 Gene

Protein Domains for KANK4 Gene

Suggested Antigen Peptide Sequences for KANK4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5T7N3

UniProtKB/Swiss-Prot:

KANK4_HUMAN :
  • Contains 5 ANK repeats.
Similarity:
  • Contains 5 ANK repeats.
genes like me logo Genes that share domains with KANK4: view

Function for KANK4 Gene

Molecular function for KANK4 Gene

UniProtKB/Swiss-Prot Function:
May be involved in the control of cytoskeleton formation by regulating actin polymerization.
genes like me logo Genes that share phenotypes with KANK4: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for KANK4 Gene

Localization for KANK4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for KANK4 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for KANK4 gene
Compartment Confidence
cytosol 5
cytoskeleton 4
nucleus 3

Gene Ontology (GO) - Cellular Components for KANK4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with KANK4: view

Pathways & Interactions for KANK4 Gene

SuperPathways for KANK4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for KANK4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for KANK4 Gene

Transcripts for KANK4 Gene

Unigene Clusters for KANK4 Gene

KN motif and ankyrin repeat domains 4:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for KANK4 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8a · 8b · 8c ^ 9 ^ 10 ^ 11a · 11b · 11c
SP1: - - - - -
SP2: - - -
SP3: - -
SP4:
SP5:
SP6: - -

Relevant External Links for KANK4 Gene

GeneLoc Exon Structure for
KANK4
ECgene alternative splicing isoforms for
KANK4

Expression for KANK4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for KANK4 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for KANK4 Gene

This gene is overexpressed in Nerve - Tibial (x14.5), Pancreas (x7.5), Brain - Spinal cord (cervical c-1) (x6.3), and Brain - Substantia nigra (x5.1).

Protein differential expression in normal tissues from HIPED for KANK4 Gene

This gene is overexpressed in Pancreas (27.7), Adrenal (13.7), Fetal ovary (9.0), and Salivary gland (7.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for KANK4 Gene



Protein tissue co-expression partners for KANK4 Gene

NURSA nuclear receptor signaling pathways regulating expression of KANK4 Gene:

KANK4

SOURCE GeneReport for Unigene cluster for KANK4 Gene:

Hs.283398

mRNA Expression by UniProt/SwissProt for KANK4 Gene:

Q5T7N3-KANK4_HUMAN
Tissue specificity: Strongly expressed in colon, liver, lung, skeletal muscle and kidney.
genes like me logo Genes that share expression patterns with KANK4: view

Primer Products

Orthologs for KANK4 Gene

This gene was present in the common ancestor of animals.

Orthologs for KANK4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia KANK4 34 35
  • 98.36 (n)
dog
(Canis familiaris)
Mammalia KANK4 34 35
  • 85.58 (n)
cow
(Bos Taurus)
Mammalia KANK4 34 35
  • 83.22 (n)
rat
(Rattus norvegicus)
Mammalia Kank4 34
  • 78.82 (n)
mouse
(Mus musculus)
Mammalia Kank4 34 16 35
  • 78.63 (n)
oppossum
(Monodelphis domestica)
Mammalia KANK4 35
  • 63 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia KANK4 35
  • 44 (a)
OneToOne
chicken
(Gallus gallus)
Aves KANK4 34 35
  • 59.04 (n)
lizard
(Anolis carolinensis)
Reptilia KANK4 35
  • 49 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia kank4 34
  • 60.07 (n)
zebrafish
(Danio rerio)
Actinopterygii kank4 35
  • 25 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG10249 35
  • 15 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea vab-19 35
  • 18 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.3164 35
  • 25 (a)
ManyToMany
-- 35
  • 10 (a)
ManyToMany
Species where no ortholog for KANK4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for KANK4 Gene

ENSEMBL:
Gene Tree for KANK4 (if available)
TreeFam:
Gene Tree for KANK4 (if available)

Paralogs for KANK4 Gene

Paralogs for KANK4 Gene

(13) SIMAP similar genes for KANK4 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with KANK4: view

Variants for KANK4 Gene

Sequence variations from dbSNP and Humsavar for KANK4 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10157938 -- 62,305,737(+) AAAAT(C/G)GGGAA intron-variant
rs10465842 -- 62,295,130(+) GACTC(C/T)GCTCA intron-variant
rs10465843 -- 62,295,275(+) CTACA(G/T)GGACT intron-variant
rs10493318 -- 62,277,293(+) TTACA(C/T)AAAAG intron-variant
rs10493319 -- 62,300,329(+) ATTCT(C/T)CTTCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for KANK4 Gene

Variant ID Type Subtype PubMed ID
esv2457868 CNV deletion 19546169
esv2660405 CNV deletion 23128226
esv3562982 CNV deletion 23714750
esv3562993 CNV deletion 23714750
esv3577900 CNV loss 25503493
esv3586233 CNV loss 21293372
esv3893601 CNV loss 25118596
nsv1122353 CNV deletion 24896259
nsv520333 CNV loss 19592680
nsv525191 CNV loss 19592680

Variation tolerance for KANK4 Gene

Residual Variation Intolerance Score: 89.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 9.31; 88.28% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for KANK4 Gene

Human Gene Mutation Database (HGMD)
KANK4
SNPedia medical, phenotypic, and genealogical associations of SNPs for
KANK4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for KANK4 Gene

Disorders for KANK4 Gene

Relevant External Links for KANK4

Genetic Association Database (GAD)
KANK4
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
KANK4

No disorders were found for KANK4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for KANK4 Gene

Publications for KANK4 Gene

  1. Kank proteins: a new family of ankyrin-repeat domain-containing proteins. (PMID: 17996375) Zhu Y. … Kiyama R. (Biochim. Biophys. Acta 2008) 2 3 4 64
  2. Kank proteins: structure, functions and diseases. (PMID: 19554261) Kakinuma N. … Kiyama R. (Cell. Mol. Life Sci. 2009) 2 3 64
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64

Products for KANK4 Gene

Sources for KANK4 Gene

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