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CD82 Gene

protein-coding   GIFtS: 59

GC11P044544
CD82 molecule
(Previous names: kangai 1 (suppression of tumorigenicity 6, prostate; CD82 antigen (R2 leukocyte antigen, antigen detected by monoclonal and antibody IA4)), CD82 antigen )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbols: ST6, KAI1)
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
4F9 2
C33 2
GR15 2
IA4 1, 2, 3
KAI1 2, 3, 5
R2 1, 2
SAR2 2, 3, 5
ST6 2, 3, 5
TSPAN27 1, 2, 3
Tetraspanin-27 3
Tspan-27 3
Descriptions
C33 antigen 2, 3
CD82 antigen 1, 2, 3
CD82 molecule 2
Inducible membrane protein R2 2, 3
Metastasis suppressor Kangai-1 3
R2 leukocyte antigen 2
Suppressor of tumorigenicity protein 6 3
kangai 1 (suppression of tumorigenicity 6, prostate; CD82
antigen (R2 leukocyte antigen, antigen detected by
monoclonal and antibody IA4)) 1, 2
suppression of tumorigenicity 6 2
suppressor of tumorigenicity 6 2
External Ids
HGNC: 62101
Entrez Gene: 37322
UniProtKB: P277013
Ensembl: ENSG000000851177
Search outside databases for aliases for CD82 gene

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for CD82:
This metastasis suppressor gene product is a membrane glycoprotein that is a member of the
transmembrane 4 superfamily. Expression of this gene has been shown to be downregulated in tumor
progression of human cancers and can be activated by p53 through a consensus binding sequence in
the promoter. Its expression and that of p53 are strongly correlated, and the loss of expression
of these two proteins is associated with poor survival for prostate cancer patients. Two
alternatively spliced transcript variants encoding distinct isoforms have been found for this
gene. [provided by RefSeq]

UniProtKB/Swiss-Prot: CD82_HUMAN, P27701
Function: Associates with CD4 or CD8 and delivers costimulatory signals for the TCR/CD3 pathway

Gene Wiki entry for CD82

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the CD82 gene  

Entrez Gene cytogenetic band: 11p11.2   Ensembl cytogenetic band:  11p11.2   HGNC cytogenetic band: 11p11.2

CD82 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11P044544:     (about GC identifiers)

Start:
44,543,717 bp from pter
End:
44,597,915 bp from pter
Size:
54,199 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000011.8  NT_009237.17  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: CD82_HUMAN, P27701 (See protein sequence)
Recommended Name: CD82 antigen  
Size: 267 amino acids; 29626 Da
Subunit: Interacts directly with IGSF8
Subcellular location: Membrane; Multi-pass membrane protein

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins (2 alternative transcripts): 
    NP_001020015.1  NP_002222.1  


    ENSEMBL proteins: 
    ENSP00000339686 ENSP00000227155 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (CD82)
    Human Recombinant Proteins from Abnova (CD82)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    2 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886 plasma membrane TAS7754374
    GO:0005887 integral to plasma membrane TAS1842498
    About this table

    Antibodies for CD82: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for CD82
    R&D Systems Antibodies for CD82 (CD82/Kai-1)
    Antibodies from Abcam (CD82), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (CD82)
    Novus Biologicals Antibodies for CD82

    Assays for CD82: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    3 InterPro domains/families:
     IPR018499 Tetraspanin
     IPR000301 Tetraspanin_sub
     IPR018503 Tetraspanin_CS


       GeneDecks  CD82 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry P27701

    ProtoNet protein and cluster: P27701

    1 Blocks protein family: IPB000301 Transmembrane four family signature

    UniProtKB/Swiss-Prot: CD82_HUMAN, P27701
    Similarity: Belongs to the tetraspanin (TM4SF) family

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (CD82)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (CD82)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_001024844

                  Applied Biosystems Silencer® siRNAs for CD82

                  Sigma-Aldrich siRNA and siRNA Panels for CD82  
                         Sigma-Aldrich shRNA Panels and shRNA for CD82  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for CD82
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_001024844
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_001024844
                                     untagged cDNA clones in CMV expression vector (see all 3): NM_001024844 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_002231

    UniProtKB/Swiss-Prot: CD82_HUMAN, P27701
    Function: Associates with CD4 or CD8 and delivers costimulatory signals for the TCR/CD3 pathway

    1 Gene Ontology (GO) molecular function term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515 protein binding IPI15205336
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    1 Invitrogen iPath™ Online BioAtlas - Pathway for CD82 (Maps provided by GeneGo):
     Integrin-mediated cell-matrix adhesion

       GeneDecks  CD82 for the pathways selected above  
    About GeneDecksing

    1 Kegg Pathway  (Kegg details for CD82):
     hsa04115 p53 signaling pathway

       GeneDecks  CD82 for the pathways selected above  
    About GeneDecksing
     Gene Network CentralTM Interacting Genes and Proteins Network for  CD82 


    5/40 Interacting proteins for CD82 (ENSP000002271553 P277011) via UniProtKB, MINT, and/or STRING (see all 40 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    VANGL1Q8TAA91STRING (score=.783) EBI-682379, EBI-682393
    EGFRENSP000002754933STRING (score=.971)
    ITGB1ENSP000003640943STRING (score=.968)
    TP53ENSP000002693053STRING (score=.965)
    APBB1ENSP000002994023STRING (score=.954)
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for CD82
    4 Novoseek chemical compound relationships for CD82 gene
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    at-61 84.65 1 9041184 (1)
    digitonin 30.79 1 12938224 (1)
    tyrosine 14.88 6 17215249 (4), 18395972 (1), 15454569 (1)
    cholesterol 0.00 4 12938224 (1), 15454569 (1)
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (CD82)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (CD82)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_001024844

                  Sigma-Aldrich siRNA and siRNA Panels for CD82  
                         Sigma-Aldrich shRNA Panels and shRNA for CD82  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_001024844  NM_002231  

    REFSEQ mRNAs for CD82 gene (2 alternative transcripts): 

    NM_001024844.1   NM_002231.3   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_001024844  NM_002231  

                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_001024844
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_001024844
                                     untagged cDNA clones in CMV expression vector (see all 3): NM_001024844 

    Additional cDNA sequence: 

    AK225410.1 AK225708.1 AK312677.1 AY303776.1 BC000726.2 BC001821.2 BT019761.1 BT019762.1 
    CR407650.1 CR542255.1 CR593263.1 CR606617.1 CR609000.1 CR615871.1 S48196.1 U20770.1 

    19 DOTS entries:

    DT.100793427  DT.313063  DT.97844941  DT.100793432  DT.120712758  DT.120712722  DT.92442010  DT.100793426 
    DT.120712724  DT.91742256  DT.100793430  DT.120712720  DT.120712748  DT.120712751  DT.40261002  DT.95076548 
    DT.95076555  DT.120753710  DT.95315953 

    24/268 AceView cDNA sequences (see all 268 ):

    BP366951 AI354379 BG654786 BE349302 BM353004 BE871165 CR606617 BM914425 
    BG759651 AU119042 BI753805 CR609000 BU196310 CR615871 AW168332 BU785750 
    AU077255 BE205860 BU785446 CR593263 BU185132 BM473622 BE293674 BG420128 

    highest scoring ESTs for CD82:

    AA047296 AA148488 AA285230 AA492158 AA640702 AA641265 AA861959 AI358229 AI365988 AI635272 

    Unigene Cluster for CD82:

    CD82 molecule
    Hs.527778  [show with all ESTs]
    Unigene Representative Sequence: NM_002231


    GeneLoc Exon Structure

    5/7 Alternative Splicing Database (ASD) splice patterns (SP) for CD82 (see all 7 )

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b · 4c · 4d ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9a · 9b
    SP1:                    -     -                 -                                             
    SP2:                    -     -                 -     -                                       
    SP3:                          -                 -                                             
    SP4:                                            -                                             
    SP5:                                                                                          

    About this scheme

    ECgene alternative splicing isoforms for CD82

    2 Ensembl transcripts including schematic representations:
    ENST00000342935  ENST00000227155  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    CD82 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for CD82

    1 / 2 / 3

    3 probe-sets matching CD82 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

    32247_at*2, 3 U95-A 2 1.00 0.91 1.00 1.00 X53795 0.80 1.00 0.91 1

    203904_x_at2, 3 U133-A 30 1.00 0.91 -- -- NM_002231 0.60 1.00 0.82 1

    203904_x_at2 U133Plus2 30 1.00 0.91 -- -- -- -- -- -- --
    About this table
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: GAGAAGGTGC

    SOURCE GeneReport for Unigene cluster: Hs.527778

    UniProtKB/Swiss-Prot: CD82_HUMAN, P27701
    Tissue specificity: Lymphoid specific

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for CD82 gene from 5/12 species (see all 12 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    CD821   -- CD82 molecule 86.69(n)
    82.13(a)
    611384  XM_849049.1  XP_854142.1 
    chimpanzee
    (Pan troglodytes)
    CD821   -- CD82 molecule 99.5(n)
    99.63(a)
    741685  XM_001159516.1  XP_001159516.1 
    cow
    (Bos taurus)
    CD821   -- CD82 molecule 84.77(n)
    77.15(a)
    506713  XM_583194.3  XP_583194.2 
    rat
    (Rattus norvegicus)
    Cd821   -- Cd82 molecule 78.07(n)
    76.32(a)
    83628  NM_031797.1  NP_113985.1 
    mouse
    (Mus musculus)
    Cd821, 5 2 (49.60 cM)5
    CD82 antigen1, 5 79.57(n)1
    76.69(a)1
    125211  NM_007656.31  NP_031682.11 
     AA6820765  AK1353815  (see all 20)
    About this table        Species with no ortholog for CD82

    ENSEMBL Gene Tree for CD82
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for CD82 gene
    CD632  TSPAN82  CD372  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/367 NCBI SNPs in CD82 are shown (see all 367 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 182)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 11 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs9341781,2
    A,C,F,H44542509(-) GTACGA/GGTGGA 2 -- ng518Minor allele frequency- N:0.00EU EA WA NA 628
    --
    rs47552661,2
    A,C,H44597368(+) GCCCAC/TCCTGA 2 -- ut313Minor allele frequency- T:0.00EU EA 294
    rs11399711,2
    C,F,H44596844(+) CCATCA/GTCGAG 2 I/V mis18Minor allele frequency- G:0.50EU EA WA 818
    rs122241741,2
    H44541727(+) tctgcC/Tataca 2 -- ng514Minor allele frequency- T:0.00EU EA WA 418
    --
    rs64855521,2
    C44597688(+) tcgagA/Cccatc 2 -- ut31 ese30--------
    rs124195391,2
    C44542252(+) GCTACC/TTAGGT 2 -- ng510--------
    --
    rs10630311,2
    F44597601(+) GGGGAG/AGAGGG 2 -- ut31 ese3 trp31Minor allele frequency- A:0.11MN 184
    rs8837521,2
    A,C,F,H44593415(+) ATGGGC/TGGCAT 2 G/G syn111Minor allele frequency- N:0.00EU WA EA NA 906
    rs71073351,2
    A,C,F,H44597216(+) CACGTC/GCATTC 2 V/V syn1 ese313Minor allele frequency- N:0.01EA NA EU WA 1056
    rs23038651,2
    A,C,F,H44593409(-) CCCATC/TTCCTG 2 E/E syn12Minor allele frequency- T:0.04WA NA 178
    About this table

    HapMap Linkage Disequilibrium images for CD82 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 600623   disorders: 176807  

    10/43 Novoseek disease relationships for CD82 gene (see all 43 )

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    metastasis 75.05 285 18028322 (6), 12753720 (6), 8813131 (6), 17283532 (6) (see all 99)
    prostate cancer 60.20 79 10440748 (7), 8813131 (5), 9254900 (5), 11572762 (4) (see all 35)
    cancer 53.28 96 9671393 (4), 11331321 (3), 9699525 (3), 10440748 (2) (see all 50)
    pancreatic cancer 49.74 33 15944768 (5), 18286698 (5), 8895737 (4), 9699525 (4) (see all 11)
    allelic loss 49.51 12 8813131 (5), 11895916 (1), 9126478 (1), 9254900 (1) (see all 5)
    tumors 47.51 154 12684410 (5), 10568187 (5), 9736732 (5), 10873402 (5) (see all 58)
    primary tumor 44.55 19 11895916 (2), 10582691 (2), 17308076 (2), 15592684 (1) (see all 11)
    bladder cancer 42.31 27 17982617 (4), 10767717 (3), 10840154 (3), 9815782 (3) (see all 8)
    metastatic cancer 37.60 4 16271511 (1), 11715465 (1)
    carcinoma 36.01 33 15259074 (6), 18575327 (3), 12747469 (2), 19024519 (2) (see all 15)
    About this table

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/215 PubMed articles for CD82 gene (see all 215 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 3732 HGNC: 6210 AceView: KAI1 Ensembl:ENSG00000085117 euGenes: HUgn3732
    ECgene: CD82 H-InvDB: CD82
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for CD82 Genetics and Cytogenetics in Oncology and Haematology
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for CD82:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Predesigned and custom siRNAs for CD82 Antibodies for CD82
     Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
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     Antibodies for CD82

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