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Aliases for JRKL-AS1 Gene

Subcategory (RNA class) for JRKL-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for JRKL-AS1 Gene

  • JRKL Antisense RNA 1 2 3 5
  • JRKL Antisense RNA 1 (Non-Protein Coding) 2

External Ids for JRKL-AS1 Gene

Previous GeneCards Identifiers for JRKL-AS1 Gene

  • GC11M096181

Summaries for JRKL-AS1 Gene

GeneCards Summary for JRKL-AS1 Gene

JRKL-AS1 (JRKL Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for JRKL-AS1 Gene

Genomics for JRKL-AS1 Gene

Regulatory Elements for JRKL-AS1 Gene

Enhancers for JRKL-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F096486 1.2 Ensembl ENCODE 0.3 +19.4 19443 1.3 ELF3 ATF1 MLX CREB3L1 ARID4B ZSCAN9 RAD21 DNMT3B RARA SLC30A9 LOC105369443 GC11M096475 RNA5SP346 JRKL-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around JRKL-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for JRKL-AS1 Gene

Chromosome:
11
Start:
96,443,281 bp from pter
End:
96,506,876 bp from pter
Size:
63,596 bases
Orientation:
Minus strand

Genomic View for JRKL-AS1 Gene

Genes around JRKL-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
JRKL-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for JRKL-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for JRKL-AS1 Gene

Proteins for JRKL-AS1 Gene

Post-translational modifications for JRKL-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for JRKL-AS1 Gene

Domains & Families for JRKL-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for JRKL-AS1 Gene

Function for JRKL-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for JRKL-AS1 Gene

Localization for JRKL-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for JRKL-AS1 Gene

Pathways & Interactions for JRKL-AS1 Gene

SuperPathways for JRKL-AS1 Gene

No Data Available

Interacting Proteins for JRKL-AS1 Gene

Gene Ontology (GO) - Biological Process for JRKL-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for JRKL-AS1 Gene

Transcripts for JRKL-AS1 Gene

mRNA/cDNA for JRKL-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for JRKL-AS1 Gene

JRKL antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for JRKL-AS1 Gene

No ASD Table

Relevant External Links for JRKL-AS1 Gene

GeneLoc Exon Structure for
JRKL-AS1
ECgene alternative splicing isoforms for
JRKL-AS1

Expression for JRKL-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for JRKL-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for JRKL-AS1 Gene

This gene is overexpressed in Testis (x53.0).

SOURCE GeneReport for Unigene cluster for JRKL-AS1 Gene:

Hs.742044
genes like me logo Genes that share expression patterns with JRKL-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for JRKL-AS1 Gene

Orthologs for JRKL-AS1 Gene

Evolution for JRKL-AS1 Gene

ENSEMBL:
Gene Tree for JRKL-AS1 (if available)
TreeFam:
Gene Tree for JRKL-AS1 (if available)

No data available for Orthologs for JRKL-AS1 Gene

Paralogs for JRKL-AS1 Gene

No data available for Paralogs for JRKL-AS1 Gene

Variants for JRKL-AS1 Gene

Sequence variations from dbSNP and Humsavar for JRKL-AS1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs10450556 -- 96,455,578(+) CAATA(C/T)CTAAG intron-variant
rs10501854 -- 96,448,944(+) AGCTG(C/G)TATAT intron-variant
rs1055291 -- 96,483,746(-) ACCCT(G/T)AGAAG intron-variant
rs10599763 -- 96,453,686(+) TCTAT(-/ACAC)ACACA intron-variant
rs10765807 -- 96,477,845(+) AGACA(C/T)ATAGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for JRKL-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv516287 CNV loss 19592680
nsv39134 CNV deletion 16902084
nsv1152153 CNV deletion 26484159
esv9550 CNV loss 19470904
esv3548196 CNV deletion 23714750
esv3255829 CNV deletion 24192839
esv2744944 CNV deletion 23290073
esv2569306 CNV deletion 19546169
esv2111227 CNV deletion 18987734
dgv2106n54 CNV loss 21841781
dgv1256n100 CNV gain 25217958
dgv1255n100 CNV loss 25217958

Relevant External Links for JRKL-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
JRKL-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for JRKL-AS1 Gene

Disorders for JRKL-AS1 Gene

Relevant External Links for JRKL-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
JRKL-AS1

No disorders were found for JRKL-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for JRKL-AS1 Gene

Publications for JRKL-AS1 Gene

No publications were found for JRKL-AS1 Gene.

Products for JRKL-AS1 Gene

Sources for JRKL-AS1 Gene

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