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Aliases for JRK Gene

Aliases for JRK Gene

  • Jrk Helix-Turn-Helix Protein 2 3
  • JH8 3 4
  • Jerky (Mouse) Homolog 2
  • Jerky Homolog (Mouse) 2
  • Jrk Homolog (Mouse) 2
  • Jerky Homolog 3
  • Jrk Homolog 3
  • Jerky 3

External Ids for JRK Gene

Previous GeneCards Identifiers for JRK Gene

  • GC08M142043
  • GC08M143974
  • GC08M143548
  • GC08M143807
  • GC08M143808
  • GC08M143735
  • GC08M138992

Summaries for JRK Gene

Entrez Gene Summary for JRK Gene

  • This gene encodes a conserved protein that is similar to DNA-binding proteins, such as major centromere autoantigen B (CENPB). Inactivation of the related gene in mice resulted in epileptic seizures. Childhood Absence Epilepsy (CAE) has been mapped to the same chromosomal location (8q24.3) as this gene. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013]

GeneCards Summary for JRK Gene

JRK (Jrk Helix-Turn-Helix Protein) is a Protein Coding gene. Diseases associated with JRK include childhood absence epilepsy and epilepsy, generalized, with febrile seizures plus, type 5. GO annotations related to this gene include nucleic acid binding and mRNA binding.

UniProtKB/Swiss-Prot for JRK Gene

  • May bind DNA.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for JRK Gene

Genomics for JRK Gene

Regulatory Elements for JRK Gene

Genomic Location for JRK Gene

142,651,501 bp from pter
142,681,968 bp from pter
30,468 bases
Minus strand

Genomic View for JRK Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for JRK Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for JRK Gene

Proteins for JRK Gene

  • Protein details for JRK Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Jerky protein homolog
    Protein Accession:
    Secondary Accessions:
    • O75565

    Protein attributes for JRK Gene

    520 amino acids
    Molecular mass:
    57402 Da
    Quaternary structure:
    No Data Available

neXtProt entry for JRK Gene

Proteomics data for JRK Gene at MOPED

Post-translational modifications for JRK Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for JRK Gene

No data available for DME Specific Peptides for JRK Gene

Domains & Families for JRK Gene

Gene Families for JRK Gene

Protein Domains for JRK Gene

Suggested Antigen Peptide Sequences for JRK Gene

Graphical View of Domain Structure for InterPro Entry



  • Contains 1 DDE domain.
  • Belongs to the tigger transposable element derived protein family.
  • Contains 1 DDE domain.
  • Contains 1 HTH CENPB-type DNA-binding domain.
  • Belongs to the tigger transposable element derived protein family.
genes like me logo Genes that share domains with JRK: view

Function for JRK Gene

Molecular function for JRK Gene

GENATLAS Biochemistry:
murine epilepsy jerky homolog on chromosome 8,widely expressed with a major large transcript and two smaller minor transcripts,not implicated in childhood absence epilepsy
UniProtKB/Swiss-Prot Function:
May bind DNA.

Gene Ontology (GO) - Molecular Function for JRK Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IEA --
GO:0003729 mRNA binding --
GO:0005515 protein binding IPI 21399610
genes like me logo Genes that share ontologies with JRK: view

Phenotypes for JRK Gene

GenomeRNAi human phenotypes for JRK:
genes like me logo Genes that share phenotypes with JRK: view

Animal Model Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for JRK

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for JRK Gene

Localization for JRK Gene

Subcellular locations from UniProtKB/Swiss-Prot for JRK Gene

Gene Ontology (GO) - Cellular Components for JRK Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005634 nucleus IEA --
GO:0005737 cytoplasm --
GO:0030529 ribonucleoprotein complex --
genes like me logo Genes that share ontologies with JRK: view

No data available for Subcellular locations from COMPARTMENTS for JRK Gene

Pathways & Interactions for JRK Gene

SuperPathways for JRK Gene

No Data Available

Gene Ontology (GO) - Biological Process for JRK Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with JRK: view

No data available for Pathways by source and SIGNOR curated interactions for JRK Gene

Drugs & Compounds for JRK Gene

No Compound Related Data Available

Transcripts for JRK Gene

Unigene Clusters for JRK Gene

Jerky homolog (mouse):
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for JRK

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for JRK Gene

No ASD Table

Relevant External Links for JRK Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for JRK Gene

mRNA expression in normal human tissues for JRK Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for JRK Gene

This gene is overexpressed in Stomach (x4.2).

Protein differential expression in normal tissues from HIPED for JRK Gene

This gene is overexpressed in Heart (67.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MOPED, and MaxQB for JRK Gene

SOURCE GeneReport for Unigene cluster for JRK Gene Hs.535903

mRNA Expression by UniProt/SwissProt for JRK Gene

Tissue specificity: Expressed ubiquitously.
genes like me logo Genes that share expression patterns with JRK: view

Protein tissue co-expression partners for JRK Gene

- Elite partner

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

Orthologs for JRK Gene

This gene was present in the common ancestor of mammals.

Orthologs for JRK Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia JRK 35
  • 77.86 (n)
  • 74.95 (a)
(Canis familiaris)
Mammalia JRK 35
  • 79.67 (n)
  • 78.19 (a)
(Mus musculus)
Mammalia Jrk 35
  • 78.72 (n)
  • 77.52 (a)
Jrk 16
(Pan troglodytes)
Mammalia JRK 35
  • 98.73 (n)
  • 98.29 (a)
(Rattus norvegicus)
Mammalia Jrk 35
  • 79.14 (n)
  • 78.42 (a)
Species with no ortholog for JRK:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for JRK Gene

Gene Tree for JRK (if available)
Gene Tree for JRK (if available)

Paralogs for JRK Gene

(4) SIMAP similar genes for JRK Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with JRK: view

No data available for Paralogs for JRK Gene

Variants for JRK Gene

Sequence variations from dbSNP and Humsavar for JRK Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs750529 -- 142,663,460(+) ACGTG(C/G)AAACC intron-variant, utr-variant-3-prime
rs750530 -- 142,663,514(+) AGGCC(A/G)TAAGT intron-variant, utr-variant-3-prime
rs754957 -- 142,664,997(+) CGGGC(A/G)TGGGG reference, synonymous-codon
rs1056012 -- 142,658,755(-) TCCAT(C/G/T)TCCAT utr-variant-3-prime, intron-variant
rs1137521 -- 142,657,748(-) TGGGA(A/G)ATGTT utr-variant-3-prime, intron-variant

Structural Variations from Database of Genomic Variants (DGV) for JRK Gene

Variant ID Type Subtype PubMed ID
esv2661137 CNV Deletion 23128226
dgv7910n71 CNV Loss 21882294
dgv7914n71 CNV Loss 21882294
dgv7915n71 CNV Loss 21882294
dgv7916n71 CNV Loss 21882294
nsv428207 CNV Gain+Loss 18775914
nsv891637 CNV Loss 21882294
nsv831485 CNV Loss 17160897

Relevant External Links for JRK Gene

HapMap Linkage Disequilibrium report
Human Gene Mutation Database (HGMD)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for JRK Gene

Disorders for JRK Gene

MalaCards: The human disease database

(2) MalaCards diseases for JRK Gene - From: Orphanet and GeneCards

Disorder Aliases PubMed IDs
childhood absence epilepsy
  • pyknolepsy
epilepsy, generalized, with febrile seizures plus, type 5
  • epilepsy, idiopathic generalized, 10
- elite association
Search JRK in MalaCards View complete list of genes associated with diseases

Relevant External Links for JRK

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with JRK: view

No data available for UniProtKB/Swiss-Prot and Genatlas for JRK Gene

Publications for JRK Gene

  1. JH8, a gene highly homologous to the mouse jerky gene, maps to the region for childhood absence epilepsy on 8q24. (PMID: 9675132) Morita R. … Yamakawa K. (Biochem. Biophys. Res. Commun. 1998) 2 23 67
  2. Complex regulation and nuclear localization of JRK protein. (PMID: 15506925) Waldron R. … Moore T. (Biochem. Soc. Trans. 2004) 23 67
  3. Bcl2-associated athanogene 3 interactome analysis reveals a new role in modulating proteasome activity. (PMID: 23824909) Chen Y. … Ge F. (Mol. Cell Proteomics 2013) 67
  4. Jerky/Earthbound facilitates cell-specific Wnt/Wingless signalling by modulating I^-catenin-TCF activity. (PMID: 21399610) Benchabane H. … Ahmed Y. (EMBO J. 2011) 67
  5. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 67

Products for JRK Gene

Sources for JRK Gene

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