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Aliases for JPX Gene

Subcategory (RNA class) for JPX Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for JPX Gene

  • JPX Transcript, XIST Activator (Non-Protein Coding) 2 3
  • Expressed Neighbor Of XIST 2 3
  • Just Proximal To XIST 2 3
  • NCRNA00183 3 6
  • ENOX 3 6
  • Non-Protein Coding RNA 183 2
  • LINC00183 3
  • DCBALD06 3

External Ids for JPX Gene

Previous HGNC Symbols for JPX Gene

  • NCRNA00183

Previous GeneCards Identifiers for JPX Gene

  • GC0XP073166

Summaries for JPX Gene

Entrez Gene Summary for JPX Gene

  • JPX is a nonprotein-coding RNA transcribed from a gene within the X-inactivation center (XIC; MIM 314670) that appears to participate in X chromosome inactivation (Tian et al., 2010 [PubMed 21029862]).[supplied by OMIM, Feb 2011]

GeneCards Summary for JPX Gene

JPX (JPX Transcript, XIST Activator (Non-Protein Coding)) is an RNA Gene, and is affiliated with the lncRNA class.

Gene Wiki entry for JPX Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for JPX Gene

Genomics for JPX Gene

Genomic Location for JPX Gene

Start:
73,944,324 bp from pter
End:
74,070,408 bp from pter
Size:
126,085 bases
Orientation:
Plus strand

Genomic View for JPX Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for JPX Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for JPX Gene

No data available for Regulatory Elements for JPX Gene

Proteins for JPX Gene

Post-translational modifications for JPX Gene

No Post-translational modifications

No data available for DME Specific Peptides for JPX Gene

Domains for JPX Gene

Gene Families for JPX Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with JPX: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for JPX Gene

Function for JPX Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for JPX Gene

Localization for JPX Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for JPX Gene

Pathways for JPX Gene

SuperPathways for JPX Gene

No Data Available

Interacting Proteins for JPX Gene

Gene Ontology (GO) - Biological Process for JPX Gene

None

No data available for Pathways by source for JPX Gene

Transcripts for JPX Gene

mRNA/cDNA for JPX Gene

(4) Additional mRNA sequences :
(14) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for JPX Gene

JPX transcript, XIST activator (non-protein coding):
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for JPX

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for JPX Gene

No ASD Table

Relevant External Links for JPX Gene

GeneLoc Exon Structure for
JPX
ECgene alternative splicing isoforms for
JPX

Expression for JPX Gene

mRNA expression in normal human tissues for JPX Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

SOURCE GeneReport for Unigene cluster for JPX Gene Hs.648316

genes like me logo Genes that share expressions with JPX: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for JPX Gene

Orthologs for JPX Gene

Evolution for JPX Gene

ENSEMBL:
Gene Tree for JPX (if available)
TreeFam:
Gene Tree for JPX (if available)

No data available for Orthologs for JPX Gene

Paralogs for JPX Gene

No data available for Paralogs for JPX Gene

Variants for JPX Gene

Sequence variations from dbSNP and Humsavar for JPX Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs595328 -- 73,960,119(-) caggc(A/G)tggtg intron-variant
rs595365 -- 73,960,087(-) tactc(G/T)ggagg intron-variant
rs595398 -- 73,960,065(-) gaatc(A/G)cttga intron-variant
rs604622 -- 73,980,636(-) caaaa(A/C)aatta intron-variant
rs647494 -- 73,971,301(-) aaaaa(A/T)aataa intron-variant

Structural Variations from Database of Genomic Variants (DGV) for JPX Gene

Variant ID Type Subtype PubMed ID
esv1005511 CNV Insertion 20482838
esv29793 CNV Loss 19812545
esv2656629 CNV Deletion 23128226
nsv6960 CNV Insertion 18451855
esv2656958 CNV Deletion 23128226
esv2673779 CNV Deletion 23128226
nsv483128 CNV Loss 15286789
esv2067362 CNV Deletion 18987734

Relevant External Links for JPX Gene

HapMap Linkage Disequilibrium report
JPX

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for JPX Gene

Disorders for JPX Gene

No disorders were found for JPX Gene.

No data available for UniProtKB/Swiss-Prot for JPX Gene

Publications for JPX Gene

  1. The long noncoding RNA, Jpx, is a molecular switch for X chromosome inactivation. (PMID: 21029862) Tian D. … Lee J.T. (Cell 2010) 2 3
  2. [Comparative organization and the origin of noncoding regulatory RNA genes from X-chromosome inactivation center of human and mouse]. (PMID: 21254562) Kolesnikov N.N. … Elisafenko E.A. (Genetika 2010) 2 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  5. Distinct class of putative "non-conserved" promoters in humans: comparative studies of alternative promoters of human and mouse genes. (PMID: 17567985) Tsuritani K. … Suzuki Y. (Genome Res. 2007) 3

Products for JPX Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate JPX
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for JPX
    • Block miRNA regulation of JPX using miScript Target Protectors

    Sources for JPX Gene

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