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Aliases for JOSD1 Gene

Aliases for JOSD1 Gene

  • Josephin Domain Containing 1 2 3 5
  • Josephin Domain-Containing Protein 1 3 4
  • Josephin Domain-Containing 1 3
  • EC 3.4.19.12 4
  • DJ508I15.2 3
  • Josephin-1 3
  • KIAA0063 4
  • JSPH1 4

External Ids for JOSD1 Gene

Previous GeneCards Identifiers for JOSD1 Gene

  • GC22M037407
  • GC22M039081
  • GC22M022047

Summaries for JOSD1 Gene

GeneCards Summary for JOSD1 Gene

JOSD1 (Josephin Domain Containing 1) is a Protein Coding gene. Among its related pathways are Metabolism of proteins and Josephin domain DUBs. GO annotations related to this gene include omega peptidase activity. An important paralog of this gene is JOSD2.

UniProtKB/Swiss-Prot for JOSD1 Gene

  • Deubiquitinates monoubiquitinated probes (in vitro). When ubiquitinated, cleaves Lys-63-linked and Lys-48-linked poly-ubiquitin chains (in vitro), hence may act as a deubiquitinating enzyme. May increase macropinocytosis and suppress clathrin- and caveolae-mediated endocytosis. May enhance membrane dynamics and cell motility independently of its catalytic activity.

Additional gene information for JOSD1 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for JOSD1 Gene

Genomics for JOSD1 Gene

Regulatory Elements for JOSD1 Gene

Enhancers for JOSD1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22H038702 1.6 Ensembl ENCODE dbSUPER 18.5 -4.2 -4160 6.2 HDGF PKNOX1 FOXA2 ARID4B SIN3A FEZF1 DMAP1 YY1 SLC30A9 ZNF207 CBY1 FAM227A ENSG00000228274 DDX17 JOSD1 RPL3 SNORD83B MIEF1 PLA2G6 GTPBP1
GH22H038502 1.4 ENCODE dbSUPER 15.1 +195.8 195844 5.6 HDGF PKNOX1 FOXA2 ARID4B FEZF1 DMAP1 YBX1 ZNF2 YY1 ZNF766 ENSG00000228274 SNORD83B DDX17 JOSD1 RPL3 PLA2G6 KDELR3 KCNJ4 SNORD83A GGA1
GH22H039518 2 FANTOM5 Ensembl ENCODE dbSUPER 9.7 -822.8 -822828 12.3 MLX DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3 NFYC ZFP41 SSRP1 ENSG00000272834 TAB1 ENSG00000230912 ATF4 ENSG00000228274 RPL3 CBY1 CBX6 SNORD83B CBX7
GH22H038768 1.5 Ensembl ENCODE dbSUPER 11 -67.4 -67445 0.4 ZNF493 ZFP64 GLIS2 ZNF143 ZNF202 ZC3H11A TSHZ1 REST MIER2 ZNF623 DDX17 CSNK1E EIF3L TAB1 ENSG00000228274 CBY1 SNORD83B ENSG00000230912 PLA2G6 RPL3
GH22H038282 1.5 Ensembl ENCODE dbSUPER 10.9 +417.4 417448 3.3 PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF121 FOS SP5 MXD4 DDX17 EIF3L MAFF PRDX3P1 PLA2G6 JOSD1 KCNJ4 KDELR3 PICK1 CSNK1E
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around JOSD1 on UCSC Golden Path with GeneCards custom track

Promoters for JOSD1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000146208 1056 2201 PKNOX1 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF766 ZNF416

Genomic Locations for JOSD1 Gene

Genomic Locations for JOSD1 Gene
chr22:38,685,543-38,701,556
(GRCh38/hg38)
Size:
16,014 bases
Orientation:
Minus strand
chr22:39,081,548-39,097,561
(GRCh37/hg19)

Genomic View for JOSD1 Gene

Genes around JOSD1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
JOSD1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for JOSD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for JOSD1 Gene

Proteins for JOSD1 Gene

  • Protein details for JOSD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q15040-JOS1_HUMAN
    Recommended name:
    Josephin-1
    Protein Accession:
    Q15040
    Secondary Accessions:
    • A8K712

    Protein attributes for JOSD1 Gene

    Size:
    202 amino acids
    Molecular mass:
    23198 Da
    Quaternary structure:
    • Interacts with beta-actin/ACTB.
    SequenceCaution:
    • Sequence=BAA06682.2; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

neXtProt entry for JOSD1 Gene

Post-translational modifications for JOSD1 Gene

  • Monoubiquitinated (By similarity). Ubiquitination activates deubiquitination activity in vitro.
  • Ubiquitination at isoforms=74 and posLast=180180
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for JOSD1 Gene

Domains & Families for JOSD1 Gene

Gene Families for JOSD1 Gene

HGNC:
Human Protein Atlas (HPA):
  • Enzymes
  • Predicted intracellular proteins

Protein Domains for JOSD1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for JOSD1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with JOSD1: view

No data available for UniProtKB/Swiss-Prot for JOSD1 Gene

Function for JOSD1 Gene

Molecular function for JOSD1 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).
UniProtKB/Swiss-Prot Function:
Deubiquitinates monoubiquitinated probes (in vitro). When ubiquitinated, cleaves Lys-63-linked and Lys-48-linked poly-ubiquitin chains (in vitro), hence may act as a deubiquitinating enzyme. May increase macropinocytosis and suppress clathrin- and caveolae-mediated endocytosis. May enhance membrane dynamics and cell motility independently of its catalytic activity.

Enzyme Numbers (IUBMB) for JOSD1 Gene

Phenotypes From GWAS Catalog for JOSD1 Gene

Gene Ontology (GO) - Molecular Function for JOSD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004843 thiol-dependent ubiquitin-specific protease activity IBA --
GO:0005515 protein binding IPI 21516116
GO:0008233 peptidase activity IEA --
GO:0016787 hydrolase activity IEA --
GO:0036459 thiol-dependent ubiquitinyl hydrolase activity TAS --
genes like me logo Genes that share ontologies with JOSD1: view
genes like me logo Genes that share phenotypes with JOSD1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for JOSD1

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for JOSD1 Gene

Localization for JOSD1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for JOSD1 Gene

Cell membrane. Cytoplasm. Note=Ubiquitination increases localization the plasma membrane. In the cytosol, the unubiquitinated form may be associated with the cytoskeleton via ACTB-binding.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for JOSD1 gene
Compartment Confidence
cytosol 5
plasma membrane 3
nucleus 2
extracellular 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for JOSD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005829 cytosol TAS --
GO:0005886 plasma membrane IEA --
GO:0016020 membrane IDA,IEA 19946888
genes like me logo Genes that share ontologies with JOSD1: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for JOSD1 Gene

Pathways & Interactions for JOSD1 Gene

genes like me logo Genes that share pathways with JOSD1: view

Pathways by source for JOSD1 Gene

Gene Ontology (GO) - Biological Process for JOSD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006508 proteolysis IEA --
GO:0016579 protein deubiquitination TAS,IEA --
genes like me logo Genes that share ontologies with JOSD1: view

No data available for SIGNOR curated interactions for JOSD1 Gene

Drugs & Compounds for JOSD1 Gene

No Compound Related Data Available

Transcripts for JOSD1 Gene

Unigene Clusters for JOSD1 Gene

Josephin domain containing 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for JOSD1

Alternative Splicing Database (ASD) splice patterns (SP) for JOSD1 Gene

ExUns: 1 ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5a · 5b ^ 6a · 6b
SP1: - -
SP2:
SP3: -
SP4: -

Relevant External Links for JOSD1 Gene

GeneLoc Exon Structure for
JOSD1
ECgene alternative splicing isoforms for
JOSD1

Expression for JOSD1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for JOSD1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for JOSD1 Gene

This gene is overexpressed in Platelet (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for JOSD1 Gene



Protein tissue co-expression partners for JOSD1 Gene

NURSA nuclear receptor signaling pathways regulating expression of JOSD1 Gene:

JOSD1

SOURCE GeneReport for Unigene cluster for JOSD1 Gene:

Hs.3094

Evidence on tissue expression from TISSUES for JOSD1 Gene

  • Bone marrow(4.3)
  • Liver(4.2)
  • Skin(4.2)
  • Nervous system(3.3)
genes like me logo Genes that share expression patterns with JOSD1: view

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for JOSD1 Gene

Orthologs for JOSD1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for JOSD1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia JOSD1 33 34
  • 100 (n)
mouse
(Mus musculus)
Mammalia Josd1 34
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia JOSD1 33 34
  • 94.39 (n)
dog
(Canis familiaris)
Mammalia JOSD1 33 34
  • 94.22 (n)
oppossum
(Monodelphis domestica)
Mammalia JOSD1 34
  • 94 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia JOSD1 34
  • 91 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Josd1 33
  • 90.43 (n)
chicken
(Gallus gallus)
Aves JOSD1 33 34
  • 84.98 (n)
lizard
(Anolis carolinensis)
Reptilia JOSD1 34
  • 91 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia josd1 33
  • 76.29 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC100536467 33
  • 71.31 (n)
josd1 34 34
  • 63 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG3781 34
  • 37 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea josd-1 34
  • 38 (a)
OneToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons JOSL 33
  • 53.51 (n)
rice
(Oryza sativa)
Liliopsida Os03g0265200 33
  • 50.42 (n)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.8567 34
  • 46 (a)
OneToOne
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.2421 33
Species where no ortholog for JOSD1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for JOSD1 Gene

ENSEMBL:
Gene Tree for JOSD1 (if available)
TreeFam:
Gene Tree for JOSD1 (if available)

Paralogs for JOSD1 Gene

Paralogs for JOSD1 Gene

(2) SIMAP similar genes for JOSD1 Gene using alignment to 6 proteins:

Pseudogenes.org Pseudogenes for JOSD1 Gene

genes like me logo Genes that share paralogs with JOSD1: view

Variants for JOSD1 Gene

Sequence variations from dbSNP and Humsavar for JOSD1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000178459 -- 38,694,671(+) TCTTG(C/G)CTAAC intron-variant
rs1000264274 -- 38,700,393(+) CGCTC(C/T)TTTTC utr-variant-5-prime
rs1000511976 -- 38,699,494(+) ATCTT(C/G)GGCGA intron-variant
rs1000865457 -- 38,687,643(+) CTTTC(C/T)CCTCT utr-variant-3-prime
rs1001064913 -- 38,690,357(+) ATCTT(A/G)TATTT intron-variant

Variation tolerance for JOSD1 Gene

Residual Variation Intolerance Score: 32.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.80; 47.55% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for JOSD1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
JOSD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for JOSD1 Gene

Disorders for JOSD1 Gene

Relevant External Links for JOSD1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
JOSD1

No disorders were found for JOSD1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for JOSD1 Gene

Publications for JOSD1 Gene

  1. Prediction of the coding sequences of unidentified human genes. II. The coding sequences of 40 new genes (KIAA0041-KIAA0080) deduced by analysis of cDNA clones from human cell line KG-1. (PMID: 7584044) Nomura N … Tabata S (DNA research : an international journal for rapid publication of reports on genes and genomes 1994) 2 3 4 60
  2. JosD1, a membrane-targeted deubiquitinating enzyme, is activated by ubiquitination and regulates membrane dynamics, cell motility, and endocytosis. (PMID: 23625928) Seki T … Paulson HL (The Journal of biological chemistry 2013) 3 4 60
  3. Crystal structure of a Josephin-ubiquitin complex: evolutionary restraints on ataxin-3 deubiquitinating activity. (PMID: 21118805) Weeks SD … Loll PJ (The Journal of biological chemistry 2011) 3 4 60
  4. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins JE … Dunham I (Genome biology 2004) 3 4 60
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60

Products for JOSD1 Gene

  • Addgene plasmids for JOSD1

Sources for JOSD1 Gene

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