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Aliases &
Descriptions
for JMJD4
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase)
About This Section
|
| Aliases |
|---|
| FLJ12517 1, 2 | | MGC129896 2 | | OTTHUMP00000035836 2 |
| | | Descriptions |
|---|
| Jumonji domain-containing protein 4 3 | | jumonji domain containing 4 2 |
|
| |
Search outside databases for aliases for JMJD4 genePrevious GC identifer: GC01M224226 |
Summaries
for JMJD4(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| -- |
Genomic Location
for JMJD4
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences)
About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
 Transcription factor binding sites upstream to the JMJD4 gene 
Entrez Gene cytogenetic band: 1q42.13 Ensembl cytogenetic band: 1q42.13 HGNC cytogenetic band: 1q42.13JMJD4 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01M225985:
(about GC identifiers)
Start:
|
225,985,549 bp from pter |
End:
|
225,989,735 bp from pter |
Size:
|
4,187 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000001.9 NT_004559.13
| Proteins
for JMJD4
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: JMJD4_HUMAN, Q9H9V9 (See
protein sequence)Recommended Name: JmjC domain-containing protein 4 Size: 463 amino acids; 52493 Da
Caution: It is uncertain whether Met-1 or Met-47 is the initiator
Secondary accessions: Q5TBZ1 Q5TBZ6 Q9H970Alternative splicing: 2 isoforms: Q9H9V9-1 Q9H9V9-2 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_075383.1
ENSEMBL proteins: ENSP00000355720
Human Recombinant Proteins  Browse Origene for full length recombinant human proteins expressed in human HEK293 cells
Antibodies for JMJD4:
Assays for JMJD4: | Protein
Domains/
Families
for JMJD4(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q9H9V9
ProtoNet protein and cluster: Q9H9V9 UniProtKB/Swiss-Prot: JMJD4_HUMAN, Q9H9V9Similarity: Contains 1 JmjC domain | Gene Function
for JMJD4
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| OriGene 29mer shRNA kit in GFP-retroviral vector: NM_023007
 Applied Biosystems Silencer® siRNAs for JMJD4
 Sigma-Aldrich siRNA for JMJD4
Sigma-Aldrich shRNA for JMJD4
Explore Sigma-Aldrich super-pooled esiRNAs
OriGene GFP tagged cDNA clone in CMV expression vector: NM_023007
Myc/DDK tagged cDNA clone in CMV expression vector: NM_023007
untagged cDNA clone in CMV expression vector: NM_023007
Primers:  Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
OriGene genome-wide validated SYBR primer pairs: NM_023007
| Pathways & Interactions
for JMJD4
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
-- |
Drugs & Compounds
for JMJD4(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
 Browse Tocris compounds for JMJD4
|
Transcripts
for JMJD4(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene,
Expression Assays from Applied Biosystems)
About This Section
| OriGene 29mer shRNA kit in GFP-retroviral vector: NM_023007
Sigma-Aldrich siRNA for JMJD4
Sigma-Aldrich shRNA for JMJD4
Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer® siRNAs: NM_023007 REFSEQ mRNAs for JMJD4 gene: NM_023007.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_023007
OriGene GFP tagged cDNA clone in CMV expression vector: NM_023007
Myc/DDK tagged cDNA clone in CMV expression vector: NM_023007
untagged cDNA clone in CMV expression vector: NM_023007
Additional cDNA sequence: AK022579.1 AK023030.1 BC011928.2 BC109272.2 CR593629.1 CR603747.1 20 DOTS entries: DT.95160318 DT.100834440 DT.100834442 DT.95160338 DT.101984021 DT.97847177 DT.100756711 DT.100834424 DT.100834433 DT.40301445 DT.95160341 DT.95160326 DT.75152596 DT.121447836 DT.100649719 DT.100696655 DT.100840419 DT.121447553 DT.121447672 DT.121447735 24/167 AceView cDNA sequences (see all 167
):CA777470 BM559032 CR593629 BQ943765 AI623217 BE464071 BM662512 BC011928 AI199369 BI768068 BE277284 Z44647 BE297279 AI190926 CA433609 BU184048 BM835213 CA777733 AK026908 BU683775 BE908056 BX482390 BQ436138 BP873258
 highest scoring ESTs for JMJD4:AA075795 AA311944 AA400211 AK022579 AK023030 AU124175 AU127743 AU129574 AU130997 BC011928 Unigene Cluster for JMJD4: Jumonji domain containing 4 Hs.555974 [show with all ESTs]Unigene Representative Sequence: AK022579
GeneLoc Exon Structure
4 Alternative Splicing Database (ASD) splice patterns (SP) for JMJD4
| ExUns: | 1a | · | 1b | ^ | 2a | · | 2b | ^ | 3a | · | 3b | ^ | 4a | · | 4b | ^ | 5a | · | 5b | · | 5c |
|---|
|
| SP1: | | | | | - | | | | | | | | | | | | | | | | | | |
| SP2: | | | | | - | | | | | | | | - | | | | | | | | | | |
| SP3: | | | | | | | | | | | | | | | | | | | | | | | |
| SP4: | | | | | | | | | | | | | | | | | | | | | | |
About this scheme
ECgene alternative splicing isoforms for JMJD4
1 Ensembl transcript including schematic representation: ENST00000366758
|
Expression
for JMJD4
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| JMJD4 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for JMJD4
1 / 2 / 3 10 probe-sets matching JMJD4 gene Data from
(Publications) and GNF BioGPS
About these images
About these images
CGAP SAGE TAG: TGAAGTGCTT
SOURCE GeneReport for Unigene cluster: Hs.555974
|
Orthologs
for JMJD4
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for JMJD4 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for JMJD4
ENSEMBL Gene Tree for JMJD4 | Paralogs
for JMJD4(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section
| Paralogs for JMJD4 gene
- JMJD62
Pseudogenes
- 1 related pseudogene
|
SNPs/Variants
for JMJD4(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
| -- |
Disorders & Mutations
for JMJD4
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
| -- |
Medical News
for JMJD4(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications
for JMJD4 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 3 PubMed articles for JMJD4 gene: |
Search for JMJD4
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing JMJD4
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing JMJD4
(According to HUGE)
About This Section
| -- |
Specialized Databases showing JMJD4(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| About This Section
| --
| Services
for JMJD4(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section
| 
Products for JMJD4:
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