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Aliases & Descriptions for KDM4C
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 1.14.11.- 3 | | FLJ25949 2 | | GASC1 1, 2, 3 | | JHDM3C 2, 3 | | JMJD2C 2, 3 | | KIAA0780 1, 2, 3 | | OTTHUMP00000021052 2 | | OTTHUMP00000044461 2 | | bA146B14.1 2 |
| | | Descriptions |
|---|
| GASC-1 protein 3 | | Gene amplified in squamous cell carcinoma 1 protein 3 | | JmjC domain-containing histone demethylation protein 3C 2, 3 | | Jumonji domain-containing protein 2C 3 | | gene amplified in squamous cell carcinoma 1 2 | | jumonji domain containing 2C 1, 2 | | lysine (K)-specific demethylase 4C 2 | | lysine-specific demethylase 4C 1 |
|
| | Search outside databases for aliases for KDM4C gene |
Summaries for KDM4C(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for KDM4C: This gene is a member of the Jumonji domain 2 (JMJD2) family and encodes a protein with one JmjC domain, one JmjN domain, two PHD-type zinc fingers, and two Tudor domains. This nuclear protein functions as a trimethylation-specific demethylase, converting specific trimethylated histone residues to the dimethylated form. Chromosomal aberrations and increased transcriptional expression of this gene are associated with esophageal squamous cell carcinoma. Alternative splicing results in multiple transcript variants. [provided by RefSeq] UniProtKB/Swiss-Prot: KDM4C_HUMAN, Q9H3R0Function: Histone demethylase that specifically demethylates 'Lys-9' and 'Lys-36' residues of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-4', H3 'Lys-27' nor H4 'Lys-20'. Demethylates trimethylated H3 'Lys-9' and H3 'Lys-36' residue, while it has no activity on mono- and dimethylated residues. Demethylation of Lys residue generates formaldehyde and succinateGene Wiki entry for KDM4C (JMJD2C) |
Genomic Location for KDM4C
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 9p24.1 Ensembl cytogenetic band: 9p24.1 HGNC cytogenetic band: 9p24-p23KDM4C Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 9 GeneLoc Exon Structure GeneLoc location for GC09P006747:
(about GC identifiers)
Start:
|
6,747,654 bp from pter |
End:
|
7,165,648 bp from pter |
Size:
|
417,995 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000009.10 NT_008413.17
| Proteins for KDM4C
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: KDM4C_HUMAN, Q9H3R0 (See
protein sequence)Recommended Name: Lysine-specific demethylase 4C Size: 1056 amino acids; 119982 Da
Cofactor: Binds 1 Fe(2+) ion per subunit (By similarity)
Subcellular location: Nucleus (By similarity)
Sequence caution: Sequence=CAI39533.1; Type=Erroneous gene model prediction; Sequence=CAI39608.1; Type=Erroneous gene model prediction;
Secondary accessions: O94877 Q2M3M0 Q5JUC9 Q5VYJ2 Q5VYJ3Alternative splicing: 2 isoforms: Q9H3R0-1 Q9H3R0-2 REFSEQ proteins (4 alternative transcripts):
NP_001140166.1 NP_001140167.1 NP_001140168.1 NP_055876.2
ENSEMBL proteins: ENSP00000370707 ENSP00000383990 ENSP00000370710
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for KDM4C: Assays for KDM4C: | Protein
Domains/ Families for KDM4C(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q9H3R0
ProtoNet protein and cluster: Q9H3R0 3 Blocks protein families: IPB002999 Tudor domain IPB003347 Transcription factor jumonji IPB003349 Transcription factor jumonji
UniProtKB/Swiss-Prot: KDM4C_HUMAN, Q9H3R0Domain: The 2 Tudor domains recognize and bind methylated histones. Double Tudor domain has an interdigitated structure and the unusual fold is required for its ability to bind methylated histone tails (By similarity)Similarity: Belongs to the JHDM3 histone demethylase familySimilarity: Contains 1 JmjC domainSimilarity: Contains 1 JmjN domainSimilarity: Contains 2 PHD-type zinc fingersSimilarity: Contains 2 Tudor domains | Gene Function for KDM4C
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_015061
Applied Biosystems Silencer® siRNAs for KDM4C
Sigma-Aldrich siRNA and siRNA Panels for KDM4C  Sigma-Aldrich shRNA for KDM4C  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_015061                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_015061                                  untagged cDNA clone in CMV expression vector: NM_015061 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_015061
UniProtKB/Swiss-Prot: KDM4C_HUMAN, Q9H3R0Function: Histone demethylase that specifically demethylates 'Lys-9' and 'Lys-36' residues of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-4', H3 'Lys-27' nor H4 'Lys-20'. Demethylates trimethylated H3 'Lys-9' and H3 'Lys-36' residue, while it has no activity on mono- and dimethylated residues. Demethylation of Lys residue generates formaldehyde and succinateEnzyme Number (IUBMB): EC 1.14.11.- 5/8 Gene Ontology (GO) molecular function terms (links to tree view) (see all 8
): About this table | Pathways & Interactions for KDM4C
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for KDM4C 
--5 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for KDM4C(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for KDM4C
|
Transcripts for KDM4C(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_015061
Sigma-Aldrich siRNA and siRNA Panels for KDM4C  Sigma-Aldrich shRNA for KDM4C  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_015061 REFSEQ mRNAs for KDM4C gene (4 alternative transcripts): NM_001146694.1 NM_001146695.1 NM_001146696.1 NM_015061.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_015061               OriGene GFP tagged cDNA clone in CMV expression vector: NM_015061                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_015061                                  untagged cDNA clone in CMV expression vector: NM_015061  Additional cDNA sequence: AB018323.1 AB037901.1 AK098534.1 AK296401.1 AK303651.1 AK304032.1 AK304095.1 AK310439.1 AK314355.1 BC008296.1 BC036628.2 BC042976.2 BC053678.1 BC060771.1 BC104859.1 BC104861.1 BC143571.1 CR600819.1 24/29 DOTS entries (see all 29
): DT.99981759 DT.100823066 DT.100823065 DT.91768275 DT.75169436 DT.91768266 DT.107530 DT.306886 DT.100823069 DT.100823071 DT.40126457 DT.100024027 DT.101958301 DT.75135105 DT.99930232 DT.121146794 DT.86846917 DT.91768262 DT.305092 DT.75105207 DT.75141359 DT.75181324 DT.100024026 DT.433347 24/247 AceView cDNA sequences (see all 247
):BE265181 BU660755 BC008296 BM456170 CR600819 AB018323 AI341811 AI923971 AA719275 CD368911 BU079145 BG203616 AA465547 CA952644 AJ278544 BX330147 R25177 BQ694638 AW835673 BG207259 BC053678 BG181379 BG191276 AV645419 Unigene Cluster for KDM4C: Lysine (K)-specific demethylase 4C Hs.709425 [show with all ESTs]Unigene Representative Sequence: NM_015061
GeneLoc Exon Structure
3 Ensembl transcripts including schematic representations: ENST00000381306
ENST00000401787
ENST00000381309
|
Expression for KDM4C
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| KDM4C expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for KDM4C
1 / 2 11 probe-sets matching KDM4C gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: ATTTTTCTTT
SOURCE GeneReport for Unigene cluster: Hs.709425 UniProtKB/Swiss-Prot: KDM4C_HUMAN, Q9H3R0Tissue specificity: Overexpressed in several esophageal squamous cell carcinomas (ESCs) |
Orthologs for KDM4C
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for KDM4C gene from 5/7 species (see all 7
)
About this table Species with no ortholog for KDM4C
ENSEMBL Gene Tree for KDM4C | Paralogs for KDM4C(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for KDM4C gene
- KDM4D2 KDM4A2 JARID22 KDM4B2
|
SNPs/Variants for KDM4C(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for KDM4C (up to first 250kb)
|
Disorders & Mutations for KDM4C
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 605469
2 Novoseek disease relationships for KDM4C gene
About this table
|
Medical News for KDM4C(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for KDM4C (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/17 PubMed articles for KDM4C gene (see all 17
):- Prediction of the coding sequences of unidentified human genes. XI. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 9872452)2, 3, 4 Nagase T....Ohara O. (1998)
- Identification and characterization of JMJD2 family genes in silico. (PubMed id 15138608)1, 2, 3 Katoh M. and Katoh M. (2004)
- Reversal of histone lysine trimethylation by the JMJD2 family of histone demethylases. (PubMed id 16603238)3, 4 Whetstine J.R.... Shi Y. (2006)
- DNA sequence and analysis of human chromosome 9. (PubMed id 15164053)3, 4 Humphray S.J.... Dunham I. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Identification of a novel gene, GASC1, within an amplicon at 9p23-24 frequently detected in esophageal cancer cell lines. (PubMed id 10987278)3, 4 Yang Z.Q.... Inazawa J. (2000)
- Comparative integromics on JMJD2A, JMJD2B and JMJD2C: preferential expression of JMJD2C in undifferentiated ES cells. (PubMed id 17611647)1, 3 Katoh Y. and Katoh M. (2007)
- Cooperative demethylation by JMJD2C and LSD1 promotes androgen receptor-dependent gene expression. (PubMed id 17277772)1, 3 Wissmann M....Schule R. (2007)
- The putative oncogene GASC1 demethylates tri- and dimethylated lysine 9 on histone H3. (PubMed id 16732293)1, 3 Cloos P.A....Helin K. (2006)
- Genetic associations of 115 polymorphisms with cancers of the upper aerodigestive tract across 10 European countries: the ARCAGE project. (PubMed id 19339270)3 Canova C....Brennan P. (2009)
|
Search for KDM4C
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing KDM4C
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing KDM4C
(According to HUGE)
About This Section
| |
Specialized Databases showing KDM4C(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for KDM4C(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for KDM4C:

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Incremental update: 13 Oct 2009
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