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Aliases for JMJD1C-AS1 Gene

Subcategory (RNA class) for JMJD1C-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for JMJD1C-AS1 Gene

  • JMJD1C Antisense RNA 1 2 3 5

External Ids for JMJD1C-AS1 Gene

ORGUL Members for JMJD1C-AS1 Gene

Previous GeneCards Identifiers for JMJD1C-AS1 Gene

  • GC10P065226

Summaries for JMJD1C-AS1 Gene

GeneCards Summary for JMJD1C-AS1 Gene

JMJD1C-AS1 (JMJD1C Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for JMJD1C-AS1 Gene

Genomics for JMJD1C-AS1 Gene

Regulatory Elements for JMJD1C-AS1 Gene

Enhancers for JMJD1C-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F063463 1.1 FANTOM5 ENCODE 20.4 +0.5 509 3.6 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 CBX5 ZNF143 KLF13 ZNF263 JMJD1C-AS1 REEP3 NRBF2 MRPL35P2 ENSG00000224412
GH10F063479 0.2 ENCODE 11.7 +15.3 15254 1.0 PRDM1 JMJD1C-AS1 REEP3 ENSG00000224412
GH10F063491 0.9 Ensembl ENCODE 11.6 +27.2 27171 2.5 KLF1 MAX ZNF384 CEBPG HIC1 IRF9 ZNF366 FOS ZNF600 TRIM24 REEP3 JMJD1C-AS1 ENSG00000224412 GC10M063508
GH10F063428 0.5 Ensembl ENCODE 11.6 -34.3 -34263 4.1 JUN KLF17 FEZF1 CEBPG ZEB1 RFX5 HIC1 ZNF664 GATA3 ZNF366 JMJD1C-AS1 NRBF2 MRPL35P2 LOC105378330
GH10F063519 1.2 FANTOM5 ENCODE 11.6 +56.7 56658 5.2 HDGF SIN3A DMAP1 ZNF2 CBX5 ZNF263 JUNB REST SMARCB1 KAT8 JMJD1C-AS1 DBF4P1 NRBF2 REEP3 JMJD1C GC10M063572
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around JMJD1C-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for JMJD1C-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001016842 272 3000 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 CBX5 ZNF143 KLF13 ZNF263

Genomic Location for JMJD1C-AS1 Gene

Chromosome:
10
Start:
63,465,229 bp from pter
End:
63,466,563 bp from pter
Size:
1,335 bases
Orientation:
Plus strand

Genomic View for JMJD1C-AS1 Gene

Genes around JMJD1C-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
JMJD1C-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for JMJD1C-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for JMJD1C-AS1 Gene

Proteins for JMJD1C-AS1 Gene

Post-translational modifications for JMJD1C-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for JMJD1C-AS1 Gene

Domains & Families for JMJD1C-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for JMJD1C-AS1 Gene

Function for JMJD1C-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for JMJD1C-AS1 Gene

Localization for JMJD1C-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for JMJD1C-AS1 Gene

Pathways & Interactions for JMJD1C-AS1 Gene

SuperPathways for JMJD1C-AS1 Gene

No Data Available

Interacting Proteins for JMJD1C-AS1 Gene

Gene Ontology (GO) - Biological Process for JMJD1C-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for JMJD1C-AS1 Gene

Transcripts for JMJD1C-AS1 Gene

mRNA/cDNA for JMJD1C-AS1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for JMJD1C-AS1 Gene

JMJD1C antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for JMJD1C-AS1 Gene

No ASD Table

Relevant External Links for JMJD1C-AS1 Gene

GeneLoc Exon Structure for
JMJD1C-AS1
ECgene alternative splicing isoforms for
JMJD1C-AS1

Expression for JMJD1C-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for JMJD1C-AS1 Gene

SOURCE GeneReport for Unigene cluster for JMJD1C-AS1 Gene:

Hs.659950
genes like me logo Genes that share expression patterns with JMJD1C-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for JMJD1C-AS1 Gene

Orthologs for JMJD1C-AS1 Gene

Evolution for JMJD1C-AS1 Gene

ENSEMBL:
Gene Tree for JMJD1C-AS1 (if available)
TreeFam:
Gene Tree for JMJD1C-AS1 (if available)

No data available for Orthologs for JMJD1C-AS1 Gene

Paralogs for JMJD1C-AS1 Gene

No data available for Paralogs for JMJD1C-AS1 Gene

Variants for JMJD1C-AS1 Gene

Sequence variations from dbSNP and Humsavar for JMJD1C-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1054693 -- 63,465,690(-) GAGGA(A/G)GCAGC intron-variant, nc-transcript-variant, utr-variant-5-prime
rs1061259 -- 63,465,484(+) GCGCT(C/G)ACTCT intron-variant, nc-transcript-variant
rs10761770 -- 63,465,485(+) CGCTG(A/G)CTCTC intron-variant, nc-transcript-variant
rs112158348 -- 63,465,709(+) GGGAA(C/G)CGATG intron-variant, nc-transcript-variant, utr-variant-5-prime
rs112401830 -- 63,466,171(+) ACGAA(A/G)AAATG intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for JMJD1C-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2677353 CNV deletion 23128226

Relevant External Links for JMJD1C-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
JMJD1C-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for JMJD1C-AS1 Gene

Disorders for JMJD1C-AS1 Gene

Relevant External Links for JMJD1C-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
JMJD1C-AS1

No disorders were found for JMJD1C-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for JMJD1C-AS1 Gene

Publications for JMJD1C-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64

Products for JMJD1C-AS1 Gene

Sources for JMJD1C-AS1 Gene

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