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Aliases for JMJD1C-AS1 Gene

Subcategory (RNA class) for JMJD1C-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for JMJD1C-AS1 Gene

  • JMJD1C Antisense RNA 1 2 3 5

External Ids for JMJD1C-AS1 Gene

ORGUL Members for JMJD1C-AS1 Gene

Previous GeneCards Identifiers for JMJD1C-AS1 Gene

  • GC10P065226

Summaries for JMJD1C-AS1 Gene

GeneCards Summary for JMJD1C-AS1 Gene

JMJD1C-AS1 (JMJD1C Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for JMJD1C-AS1 Gene

Genomics for JMJD1C-AS1 Gene

Regulatory Elements for JMJD1C-AS1 Gene

Enhancers for JMJD1C-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G063235 1.5 Ensembl ENCODE dbSUPER 19.6 -228.4 -228398 3.3 ATF1 ARNT ZFP64 GTF3C2 ZNF121 ZNF766 ELK1 CBX5 FOS ZNF202 JMJD1C-AS1 NRBF2 RPL7AP50 REEP3 GC10P063223 GC10M063245
GH10G063272 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.9 -191.1 -191056 2.4 FOXA2 YY1 ZNF121 SCRT2 HNF4G PRDM10 MAFK RFX1 ZNF680 NFIA JMJD1C-AS1 MRPL35P2 JMJD1C NRBF2 GC10M063245 GC10P063350
GH10G063519 1.4 FANTOM5 ENCODE 11.6 +56.7 56658 5.2 HDGF PKNOX1 FOXA2 CREB3L1 ARNT SIN3A DMAP1 ZNF2 ZNF766 CBX5 JMJD1C-AS1 NRBF2 REEP3 JMJD1C GC10M063572
GH10G063264 1.4 ENCODE dbSUPER 10.9 -197.4 -197427 7.0 CREB3L1 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 TBX21 MEF2D ZNF610 JMJD1C-AS1 RPL7AP50 NRBF2 MRPL35P2 GC10M063245 GC10P063350
GH10G063463 1.4 FANTOM5 ENCODE 10.8 +0.5 509 3.6 PKNOX1 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B ZNF766 CBX5 REEP3 JMJD1C-AS1 NRBF2 MRPL35P2 ENSG00000224412
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around JMJD1C-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for JMJD1C-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000028959 371 2401 PKNOX1 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B ZNF766 CBX5

Genomic Location for JMJD1C-AS1 Gene

Chromosome:
10
Start:
63,465,229 bp from pter
End:
63,466,563 bp from pter
Size:
1,335 bases
Orientation:
Plus strand

Genomic View for JMJD1C-AS1 Gene

Genes around JMJD1C-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
JMJD1C-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for JMJD1C-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for JMJD1C-AS1 Gene

Proteins for JMJD1C-AS1 Gene

Post-translational modifications for JMJD1C-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for JMJD1C-AS1 Gene

Domains & Families for JMJD1C-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for JMJD1C-AS1 Gene

Function for JMJD1C-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for JMJD1C-AS1 Gene

Localization for JMJD1C-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for JMJD1C-AS1 Gene

Pathways & Interactions for JMJD1C-AS1 Gene

SuperPathways for JMJD1C-AS1 Gene

No Data Available

Interacting Proteins for JMJD1C-AS1 Gene

Gene Ontology (GO) - Biological Process for JMJD1C-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for JMJD1C-AS1 Gene

Drugs & Compounds for JMJD1C-AS1 Gene

No Compound Related Data Available

Transcripts for JMJD1C-AS1 Gene

mRNA/cDNA for JMJD1C-AS1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for JMJD1C-AS1 Gene

JMJD1C antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for JMJD1C-AS1 Gene

No ASD Table

Relevant External Links for JMJD1C-AS1 Gene

GeneLoc Exon Structure for
JMJD1C-AS1
ECgene alternative splicing isoforms for
JMJD1C-AS1

Expression for JMJD1C-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for JMJD1C-AS1 Gene

SOURCE GeneReport for Unigene cluster for JMJD1C-AS1 Gene:

Hs.659950
genes like me logo Genes that share expression patterns with JMJD1C-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for JMJD1C-AS1 Gene

Orthologs for JMJD1C-AS1 Gene

Evolution for JMJD1C-AS1 Gene

ENSEMBL:
Gene Tree for JMJD1C-AS1 (if available)
TreeFam:
Gene Tree for JMJD1C-AS1 (if available)

No data available for Orthologs for JMJD1C-AS1 Gene

Paralogs for JMJD1C-AS1 Gene

No data available for Paralogs for JMJD1C-AS1 Gene

Variants for JMJD1C-AS1 Gene

Sequence variations from dbSNP and Humsavar for JMJD1C-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000221619 -- 63,464,240(+) TATCA(C/G)CAAAA intron-variant, upstream-variant-2KB
rs1003480420 -- 63,466,007(+) GGCGG(C/T)GCGCA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1003844997 -- 63,466,203(+) GCGAC(A/G)GCTAT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1003981600 -- 63,466,556(+) TCACA(A/G)ATTTA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1004550271 -- 63,466,090(+) GTAGT(A/G)CCCGG intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for JMJD1C-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2677353 CNV deletion 23128226

Relevant External Links for JMJD1C-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
JMJD1C-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for JMJD1C-AS1 Gene

Disorders for JMJD1C-AS1 Gene

Relevant External Links for JMJD1C-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
JMJD1C-AS1

No disorders were found for JMJD1C-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for JMJD1C-AS1 Gene

Publications for JMJD1C-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64

Products for JMJD1C-AS1 Gene

Sources for JMJD1C-AS1 Gene

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