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Aliases & Descriptions for JMJD1C
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases DKFZp761F0118 1 , 2 EC 1.14.11.- 3 FLJ14374 1 , 2 JHDM2C 3 KIAA1380 1 , 2 , 3 OTTHUMP00000060747 2 RP11-10C13.2 2 TRIP-8 3 TRIP8 2 , 3
Descriptions Jumonji domain-containing protein 1C 3 Thyroid receptor-interacting protein 8 3 jumonji domain containing 1C 2 thyroid hormone receptor interactor 8 1 , 2 thyroid receptor interacting protein 8 2
Search outside databases for aliases for JMJD1C genePrevious GC identifer: GC10M064272
Summaries for JMJD1C (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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UniProtKB/Swiss-Prot: JHD2C_HUMAN, Q15652 Function : Probable histone demethylase that specifically demethylates 'Lys-9' of histone H3,thereby playing a central role in histone code. Demethylation of Lys residue generatesformaldehyde and succinate. May be involved in hormone-dependent transcriptional activation, byparticipating in recruitment to androgen-receptor target genes (By similarity)
Genomic Location for JMJD1C
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
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UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the JMJD1C gene Entrez Gene cytogenetic band: 10q21.2-q21.3 Ensembl cytogenetic band: 10q21.3 HGNC cytogenetic band: 10q22.1 JMJD1C Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 10 GeneLoc Exon Structure
GeneLoc location for GC10M064597:
(about GC identifiers )
Start:
64,596,987 bp from pter
End:
64,895,728 bp from pter
Size:
298,742 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000010.9 NT_008583.16 Proteins for JMJD1C
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
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Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
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UniProtKB/Swiss-Prot: JHD2C_HUMAN, Q15652 (See
protein sequence )Recommended Name: Probable JmjC domain-containing histone demethylation protein 2C Size : 2540 amino acids; 284525 Da
Cofactor : Binds 1 Fe(2+) ion per subunit (By similarity)
Subunit : Interacts specifically with the ligand-binding domain of the thyroid receptor (TR).Requires the presence of thyroid hormone for its interaction
Subcellular location : Nucleus (By similarity)
Sequence caution : Sequence=AAC41741.1; Type=Frameshift; Positions=2171; Sequence=CAD97921.1;Type=Frameshift; Positions=1697; Sequence=CAI10947.1; Type=Erroneous gene model prediction;
Secondary accessions : Q5SQZ8 Q5SQZ9 Q5SR00 Q7Z3E7 Q8N3U0 Q96KB9 Q9P2G7Alternative splicing : 2 isoforms : Q15652-1 Q15652-2
Post-translational modifications:
Phosphorylated upon DNA damage, probably by ATM or ATR1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_004232.2 NP_116165.1 ENSEMBL proteins: ENSP00000384990 ENSP00000382195 ENSP00000335929 ENSP00000382204 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for JMJD1C: Assays for JMJD1C:
Protein
Domains/ Families for JMJD1C(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q15652 ProtoNet protein and cluster: Q15652
UniProtKB/Swiss-Prot: JHD2C_HUMAN, Q15652 Domain : Leu-Xaa-Xaa-Leu-Leu (LXXLL) motifs are known to mediate the association with nuclearreceptors (By similarity) Similarity : Belongs to the JHDM2 histone demethylase familySimilarity : Contains 1 JmjC domain
Gene Function for JMJD1C
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
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Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_004241 Applied Biosystems Silencer ® siRNAs for JMJD1C Sigma-Aldrich siRNA for JMJD1C Sigma-Aldrich shRNA for JMJD1C Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_004241                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_004241                                  untagged cDNA clones in CMV expression vector (see all 3 ): AK027280  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_032776 UniProtKB/Swiss-Prot: JHD2C_HUMAN, Q15652 Function : Probable histone demethylase that specifically demethylates 'Lys-9' of histone H3,thereby playing a central role in histone code. Demethylation of Lys residue generatesformaldehyde and succinate. May be involved in hormone-dependent transcriptional activation, byparticipating in recruitment to androgen-receptor target genes (By similarity) Enzyme Number (IUBMB): EC 1.14.11.-
5/7 Gene Ontology (GO) molecular function terms (links to tree view) (see all 7
):
GO ID Qualified GO term Evidence PubMed IDs GO:0005506 iron ion binding
IEA -- GO:0005515 protein binding
IPI 17353003 GO:0008270 zinc ion binding
IEA -- GO:0016491 oxidoreductase activity
IEA -- GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
IEA --
About this table
Pathways & Interactions for JMJD1C
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/9 Interacting proteins for JMJD1C (ENSP00000335929 3 Q15652 1 ) via UniProtKB, MINT, and/or STRING (see all 9
)About this table 4 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for JMJD1C (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
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Transcripts for JMJD1C(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
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non coding RNAs according to
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_004241 Sigma-Aldrich siRNA for JMJD1C Sigma-Aldrich shRNA for JMJD1C Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_004241 NM_032776
REFSEQ mRNAs for JMJD1C gene (2 alternative transcripts): NM_004241.2 NM_032776.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004241 NM_032776
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_004241                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_004241                                  untagged cDNA clones in CMV expression vector (see all 3 ): AK027280  
Additional cDNA sequence: AB037801.1 AK024991.1 AK027280.1 AK055182.1 AK056660.1 AK095584.1 AK123507.1 AK126040.1 AL831917.1 BC026268.1 BC037981.1 BC047331.1 BC065742.1 BC067238.1 BC108649.1 BC126403.1 BC143722.1 BX537954.1 CR607761.1 CR619190.1 EF068222.1 L40411.1
24/26 DOTS entries (see all 26
): DT.100760960 DT.100761829 DT.101984094 DT.95370939 DT.444405 DT.212378 DT.75165986 DT.121260092 DT.92045498 DT.40302170 DT.40233822 DT.110581 DT.87014691 DT.92428572 DT.95367093 DT.95370938 DT.95370942 DT.121260010 DT.121260224 DT.91697647 DT.91789642 DT.92057715 DT.92443085 DT.102837256
24/232 AceView cDNA sequences (see all 232
):AL701177 AW089941 T16598 CK819567 AA644371 CF143208 CD723590 AA694142 AI005429 BG945018 BX507391 AA707793 AI860559 CB268366 CR619190 BF818641 AA620754 AK126040 AL043246 AL831917 AA953682 AW029467 AI219929 AW192227
highest scoring ESTs for JMJD1C :AA557977 AA694142 AA732458 AA749173 AA815120 AI005429 AI694023 AI799534 AI903392 AK027280
Unigene Cluster for JMJD1C: Jumonji domain containing 1C Hs.413416 [show with all ESTs ] Unigene Representative Sequence: NM_032776 GeneLoc Exon Structure 5/9 Alternative Splicing Database (ASD) splice patterns (SP) for JMJD1C (see all 9
) ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22 ^ SP1 :                                                     SP2 :                             -   -                       SP3 :                                                     SP4 :                                                     SP5 :         -                                            
ExUns: 23a · 23b ^ 24a · 24b ^ 25a · 25b ^ 26a · 26b · 26c · 26d SP1 :   -   -     -     -         SP2 :                     SP3 :                     SP4 :                     SP5 :                    
About this scheme ECgene alternative splicing isoforms for JMJD1C 4 Ensembl transcripts including schematic representations : ENST00000402544
ENST00000399251
ENST00000327520
ENST00000399262
Expression for JMJD1C
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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JMJD1C expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for JMJD1C 1 / 2 / 3
15 probe-sets matching JMJD1C gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TCATAATCAGSOURCE GeneReport for Unigene cluster: Hs.413416 Expression variation in blood from EXPOLDB for JMJD1C
Orthologs for JMJD1C
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
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Gene Trees according to Ensembl )
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Orthologs for JMJD1C gene from 5/8 species (see all 8
)
About this table Species with no ortholog for JMJD1C ENSEMBL Gene Tree for JMJD1C Paralogs for JMJD1C (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for JMJD1C gene KDM3B 2 KDM3A 2 HR 2
SNPs/Variants for JMJD1C (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for JMJD1C (up to first 250kb)
Disorders & Mutations for JMJD1C
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
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and/or TGDB .)
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OMIM: 604503
Medical News for JMJD1C (Possibly Related Articles in
Doctor's Guide )
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--
Publications for JMJD1C (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/15 PubMed articles for JMJD1C gene (see all 15
): Two classes of proteins dependent on either the presence or absence of thyroid hormone for interaction with the thyroid hormone receptor. (PubMed id 7776974) 2, 3, 4 Lee J.W....Moore D.D. (1995) Identification and characterization of TRIP8 gene in silico. (PubMed id 14533015) 1, 3, 4 Katoh M. and Katoh M. (2003) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3, 4 Ota T....Sugano S. (2004) Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10718198) 3, 4 Nagase T....Ohara O. (2000) Comparative integromics on JMJD1C gene encoding histone demethylase: conserved POU5F1 binding site elucidating mechanism of JMJD1C expression in undifferentiated ES cells and diffuse-type gastric cancer. (PubMed id 17549425) 1, 3 Katoh M. and Katoh M. (2007) A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648) 4 Dephoure N.... Gygi S.P. (2008) Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes. (PubMed id 18940312) 3 Yuan X....Mooser V. (2008) A novel variant of the putative demethylase gene, s-JMJD1C, is a coactivator of the AR. (PubMed id 17353003) 3 Wolf S.S.... Obendorf M. (2007) Identification and characterization of the TRIP8 and REEP3 genes on chromosome 10q21.3 as novel candidate genes for autism. (PubMed id 17290275) 3 Castermans D....Devriendt K. (2007) ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage. (PubMed id 17525332) 4 Matsuoka S.... Elledge S.J. (2007)
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Genome Databases showing JMJD1C
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ECgene ,
and/or
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Other Databases showing JMJD1C
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Specialized Databases showing JMJD1C (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for JMJD1C (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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