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Aliases for JHDM1D-AS1 Gene

Subcategory (RNA class) for JHDM1D-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for JHDM1D-AS1 Gene

  • JHDM1D Antisense RNA 1 (Head To Head) 2 3 5

External Ids for JHDM1D-AS1 Gene

Previous GeneCards Identifiers for JHDM1D-AS1 Gene

  • GC07P139879

Summaries for JHDM1D-AS1 Gene

GeneCards Summary for JHDM1D-AS1 Gene

JHDM1D-AS1 (JHDM1D Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for JHDM1D-AS1 Gene

Genomics for JHDM1D-AS1 Gene

Regulatory Elements for JHDM1D-AS1 Gene

Enhancers for JHDM1D-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F140223 1.4 FANTOM5 Ensembl ENCODE 11.1 +46.9 46868 0.9 HDGF HDAC1 CBX3 ARNT GATA2 CREM NCOA1 ZEB2 KLF16 SMARCA4 KDM7A JHDM1D-AS1 GC07P140221 RNU1-58P
GH07F140209 1.8 VISTA Ensembl ENCODE 5.9 +35.0 34982 5.7 HDGF ATF1 PKNOX1 ARNT WRNIP1 ZNF121 CBX5 ZNF143 FOS KLF13 KDM7A JHDM1D-AS1 GC07M140210 RNU6-797P GC07P140221
GH07F140229 1.8 FANTOM5 Ensembl ENCODE 5.8 +54.6 54576 5.7 PKNOX1 MLX ZFP64 ARID4B FEZF1 DMAP1 SLC30A9 FOS SP3 SP5 KDM7A RNU6-797P JHDM1D-AS1 TBXAS1 RAB19 GC07P140221 RNU1-58P
GH07F140164 1.5 FANTOM5 Ensembl ENCODE 6 -11.8 -11761 2.6 TBP PKNOX1 ZNF76 FEZF1 ZNF2 SCRT2 RCOR1 FOS EGR2 ZNF263 RNU6-797P KDM7A JHDM1D-AS1 TBXAS1 GC07P140176 ENSG00000251728 GC07M140095
GH07F140078 1 Ensembl 5.9 -98.7 -98661 0.4 ATF1 CREB3L1 SIN3A ZNF2 GLIS2 ZNF207 KLF7 ZMIZ1 ZNF263 SP3 KDM7A JHDM1D-AS1 LOC105375533 ENSG00000251728 GC07M140095
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around JHDM1D-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for JHDM1D-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000314093 -561 3401 PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for JHDM1D-AS1 Gene

Chromosome:
7
Start:
140,177,261 bp from pter
End:
140,179,640 bp from pter
Size:
2,380 bases
Orientation:
Plus strand

Genomic View for JHDM1D-AS1 Gene

Genes around JHDM1D-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
JHDM1D-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for JHDM1D-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for JHDM1D-AS1 Gene

Proteins for JHDM1D-AS1 Gene

Post-translational modifications for JHDM1D-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for JHDM1D-AS1 Gene

Domains & Families for JHDM1D-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for JHDM1D-AS1 Gene

Function for JHDM1D-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for JHDM1D-AS1 Gene

Localization for JHDM1D-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for JHDM1D-AS1 Gene

Pathways & Interactions for JHDM1D-AS1 Gene

SuperPathways for JHDM1D-AS1 Gene

No Data Available

Interacting Proteins for JHDM1D-AS1 Gene

Gene Ontology (GO) - Biological Process for JHDM1D-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for JHDM1D-AS1 Gene

Transcripts for JHDM1D-AS1 Gene

mRNA/cDNA for JHDM1D-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for JHDM1D-AS1 Gene

No ASD Table

Relevant External Links for JHDM1D-AS1 Gene

GeneLoc Exon Structure for
JHDM1D-AS1
ECgene alternative splicing isoforms for
JHDM1D-AS1

Expression for JHDM1D-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for JHDM1D-AS1 Gene

genes like me logo Genes that share expression patterns with JHDM1D-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for JHDM1D-AS1 Gene

Orthologs for JHDM1D-AS1 Gene

Evolution for JHDM1D-AS1 Gene

ENSEMBL:
Gene Tree for JHDM1D-AS1 (if available)
TreeFam:
Gene Tree for JHDM1D-AS1 (if available)

No data available for Orthologs for JHDM1D-AS1 Gene

Paralogs for JHDM1D-AS1 Gene

No data available for Paralogs for JHDM1D-AS1 Gene

Variants for JHDM1D-AS1 Gene

Sequence variations from dbSNP and Humsavar for JHDM1D-AS1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs111320423 -- 140,175,828(+) GCGCC(C/G)GGGCA intron-variant, upstream-variant-2KB
rs111569430 -- 140,177,117(+) CAGAC(C/T)CGGCT upstream-variant-2KB
rs112220102 -- 140,175,324(+) GAGAC(G/T)AAGAC intron-variant, upstream-variant-2KB
rs113422513 -- 140,175,475(+) GCCAA(A/G)AGACA intron-variant, upstream-variant-2KB
rs11373147 -- 140,175,828(+) CGCCC(-/G)GGGCA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for JHDM1D-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv608486 CNV loss 21841781
nsv608481 CNV gain 21841781
esv2735212 CNV deletion 23290073
dgv3678n106 CNV deletion 24896259
dgv11625n54 CNV gain 21841781

Relevant External Links for JHDM1D-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
JHDM1D-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for JHDM1D-AS1 Gene

Disorders for JHDM1D-AS1 Gene

Relevant External Links for JHDM1D-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
JHDM1D-AS1

No disorders were found for JHDM1D-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for JHDM1D-AS1 Gene

Publications for JHDM1D-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for JHDM1D-AS1 Gene

Sources for JHDM1D-AS1 Gene

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