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Aliases for JAZF1-AS1 Gene

Subcategory (RNA class) for JAZF1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for JAZF1-AS1 Gene

  • JAZF1 Antisense RNA 1 2 3 5
  • JAZF1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for JAZF1-AS1 Gene

Previous GeneCards Identifiers for JAZF1-AS1 Gene

  • GC07P028220

Summaries for JAZF1-AS1 Gene

GeneCards Summary for JAZF1-AS1 Gene

JAZF1-AS1 (JAZF1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for JAZF1-AS1 Gene

Genomics for JAZF1-AS1 Gene

Regulatory Elements for JAZF1-AS1 Gene

Enhancers for JAZF1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F028207 1.2 Ensembl ENCODE 29.1 +27.3 27330 1.3 SP1 TBL1XR1 CBX5 ZNF26 JUN JUNB GABPA JAZF1-AS1 JAZF1 LOC402644
GH07F028203 1.2 FANTOM5 Ensembl ENCODE 29.1 +23.8 23787 0.8 JAZF1-AS1 JAZF1 LOC402644
GH07F028149 1 Ensembl ENCODE 27 -30.2 -30169 1.5 SCRT1 MTA2 IKZF1 SCRT2 EBF1 EP300 NR2F2 JAZF1-AS1 JAZF1 RNU6-979P GC07M028118
GH07F028136 0.2 ENCODE 20.1 -43.6 -43646 0.2 JAZF1-AS1 JAZF1 GC07M028118 RNU6-979P
GH07F028178 0.2 ENCODE 18.5 -0.3 -272 2.7 ZMYM3 SIN3A ZIC2 GLIS2 ZBTB48 POLR2A SCRT2 CREM ZBTB20 ZNF639 JAZF1-AS1 JAZF1 RNU6-979P GC07M028118
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around JAZF1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for JAZF1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000623779 -322 2801 ZMYM3 SIN3A ZIC2 GLIS2 ZBTB48 POLR2A SCRT2 CREM ZBTB20 MAZ

Genomic Location for JAZF1-AS1 Gene

Chromosome:
7
Start:
28,180,322 bp from pter
End:
28,243,917 bp from pter
Size:
63,596 bases
Orientation:
Plus strand

Genomic View for JAZF1-AS1 Gene

Genes around JAZF1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
JAZF1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for JAZF1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for JAZF1-AS1 Gene

Proteins for JAZF1-AS1 Gene

Post-translational modifications for JAZF1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for JAZF1-AS1 Gene

Domains & Families for JAZF1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for JAZF1-AS1 Gene

Function for JAZF1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for JAZF1-AS1 Gene

Localization for JAZF1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for JAZF1-AS1 Gene

Pathways & Interactions for JAZF1-AS1 Gene

SuperPathways for JAZF1-AS1 Gene

No Data Available

Interacting Proteins for JAZF1-AS1 Gene

Gene Ontology (GO) - Biological Process for JAZF1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for JAZF1-AS1 Gene

Transcripts for JAZF1-AS1 Gene

mRNA/cDNA for JAZF1-AS1 Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for JAZF1-AS1 Gene

JAZF1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for JAZF1-AS1 Gene

No ASD Table

Relevant External Links for JAZF1-AS1 Gene

GeneLoc Exon Structure for
JAZF1-AS1
ECgene alternative splicing isoforms for
JAZF1-AS1

Expression for JAZF1-AS1 Gene

mRNA expression in normal human tissues for JAZF1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for JAZF1-AS1 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x5.3), Brain - Cortex (x4.4), and Brain - Cerebellar Hemisphere (x4.2).

SOURCE GeneReport for Unigene cluster for JAZF1-AS1 Gene:

Hs.434307
genes like me logo Genes that share expression patterns with JAZF1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for JAZF1-AS1 Gene

Orthologs for JAZF1-AS1 Gene

Evolution for JAZF1-AS1 Gene

ENSEMBL:
Gene Tree for JAZF1-AS1 (if available)
TreeFam:
Gene Tree for JAZF1-AS1 (if available)

No data available for Orthologs for JAZF1-AS1 Gene

Paralogs for JAZF1-AS1 Gene

No data available for Paralogs for JAZF1-AS1 Gene

Variants for JAZF1-AS1 Gene

Sequence variations from dbSNP and Humsavar for JAZF1-AS1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10225945 -- 28,210,464(+) CAGGA(A/G)GTGCA intron-variant
rs10227008 -- 28,227,891(+) CTCCC(A/G)GGTTC intron-variant
rs10229482 -- 28,210,980(+) TATTT(A/G)TATTA intron-variant
rs10231054 -- 28,219,889(+) AAAGG(G/T)GGCAT intron-variant
rs10232243 -- 28,193,790(+) gcccc(A/G)gctgg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for JAZF1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1032041 CNV gain 25217958
nsv1074083 CNV deletion 25765185
nsv1137575 CNV deletion 24896259
nsv1140757 CNV deletion 24896259
nsv830931 CNV gain 17160897
nsv950820 CNV deletion 24416366

Relevant External Links for JAZF1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
JAZF1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for JAZF1-AS1 Gene

Disorders for JAZF1-AS1 Gene

Relevant External Links for JAZF1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
JAZF1-AS1

No disorders were found for JAZF1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for JAZF1-AS1 Gene

Publications for JAZF1-AS1 Gene

  1. A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci. (PMID: 21980299) Bradfield J.P. … Hakonarson H. (PLoS Genet. 2011) 3 64
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 64

Products for JAZF1-AS1 Gene

Sources for JAZF1-AS1 Gene

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