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Aliases for JARID2-AS1 Gene

Subcategory (RNA class) for JARID2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for JARID2-AS1 Gene

  • JARID2 Antisense RNA 1 2 3 5
  • JARID2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for JARID2-AS1 Gene

Summaries for JARID2-AS1 Gene

GeneCards Summary for JARID2-AS1 Gene

JARID2-AS1 (JARID2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for JARID2-AS1 Gene

Genomics for JARID2-AS1 Gene

Regulatory Elements for JARID2-AS1 Gene

Enhancers for JARID2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F015274 0.6 Ensembl ENCODE 12.9 -29.8 -29805 7.8 ELF3 PKNOX1 FEZF1 RAD21 RARA YY1 ZNF121 GATA2 HSF1 SCRT2 JARID2-AS1 JARID2 RNU6-645P RNU6-522P ENSG00000271888 DTNBP1 PIR40137 GC06P015314
GH06F015287 1.2 Ensembl ENCODE 12.9 -39.7 -39705 2.8 HDGF HDAC1 TBL1XR1 KLF17 THRB RARA ZNF207 CREM SMARCA5 ZBTB2 RNU6-522P JARID2-AS1 JARID2 RNU6-645P PIR40137 GC06P015314
GH06F015283 0.8 Ensembl 12.9 -36.5 -36505 2.8 CTCF JUN RAD21 TEAD3 KLF7 ZNF652 SOX5 GATAD2A TEAD1 FOXA3 JARID2 JARID2-AS1 RNU6-645P RNU6-522P PIR40137 GC06P015314
GH06F015221 0.8 Ensembl 12 +26.6 26596 0.6 HDAC1 ESRRA CREB3L1 SIN3A RAD21 ZKSCAN1 GATA3 CTBP1 RCOR1 NR2F6 JARID2 JARID2-AS1 ENSG00000271888 GC06P015190
GH06F015222 0.2 Ensembl 12 +25.4 25396 1.0 ZNF362 JARID2 JARID2-AS1 ENSG00000271888 GC06P015190
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around JARID2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for JARID2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001211936 1596 5801 CREB3L1 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC SSRP1 ZNF610

Genomic Location for JARID2-AS1 Gene

15,247,815 bp from pter
15,248,696 bp from pter
882 bases
Minus strand

Genomic View for JARID2-AS1 Gene

Genes around JARID2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
JARID2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for JARID2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for JARID2-AS1 Gene

Proteins for JARID2-AS1 Gene

Post-translational modifications for JARID2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for JARID2-AS1 Gene

Domains & Families for JARID2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for JARID2-AS1 Gene

Function for JARID2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for JARID2-AS1 Gene

Localization for JARID2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for JARID2-AS1 Gene

Pathways & Interactions for JARID2-AS1 Gene

SuperPathways for JARID2-AS1 Gene

No Data Available

Interacting Proteins for JARID2-AS1 Gene

Gene Ontology (GO) - Biological Process for JARID2-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for JARID2-AS1 Gene

Transcripts for JARID2-AS1 Gene

mRNA/cDNA for JARID2-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for JARID2-AS1 Gene

JARID2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for JARID2-AS1 Gene

No ASD Table

Relevant External Links for JARID2-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for JARID2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for JARID2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for JARID2-AS1 Gene

This gene is overexpressed in Testis (x36.5).

SOURCE GeneReport for Unigene cluster for JARID2-AS1 Gene:

genes like me logo Genes that share expression patterns with JARID2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for JARID2-AS1 Gene

Orthologs for JARID2-AS1 Gene

Evolution for JARID2-AS1 Gene

Gene Tree for JARID2-AS1 (if available)
Gene Tree for JARID2-AS1 (if available)

No data available for Orthologs for JARID2-AS1 Gene

Paralogs for JARID2-AS1 Gene

No data available for Paralogs for JARID2-AS1 Gene

Variants for JARID2-AS1 Gene

Sequence variations from dbSNP and Humsavar for JARID2-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs10712805 -- 15,247,437(+) GTGGC(-/T)TTTTT intron-variant, downstream-variant-500B, upstream-variant-2KB
rs111928694 -- 15,248,133(+) CCCGT(C/G)GCTGG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs113213471 -- 15,248,337(+) ACCGG(G/T)CTACC intron-variant, upstream-variant-2KB
rs114409942 -- 15,247,991(+) ATGGG(A/G)TAGAA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs114836551 -- 15,250,216(+) TGGAA(A/G)AAGTT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for JARID2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv27933 CNV loss 19812545
nsv1144133 CNV deletion 24896259
nsv830594 CNV loss 17160897
nsv950773 CNV deletion 24416366

Relevant External Links for JARID2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for JARID2-AS1 Gene

Disorders for JARID2-AS1 Gene

Relevant External Links for JARID2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for JARID2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for JARID2-AS1 Gene

Publications for JARID2-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for JARID2-AS1 Gene

Sources for JARID2-AS1 Gene

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