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Aliases for JARID2-AS1 Gene

Subcategory (RNA class) for JARID2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for JARID2-AS1 Gene

  • JARID2 Antisense RNA 1 2 3 5
  • JARID2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for JARID2-AS1 Gene

Summaries for JARID2-AS1 Gene

GeneCards Summary for JARID2-AS1 Gene

JARID2-AS1 (JARID2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for JARID2-AS1 Gene

Genomics for JARID2-AS1 Gene

Regulatory Elements for JARID2-AS1 Gene

Enhancers for JARID2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F014726 1.8 FANTOM5 Ensembl ENCODE 10.9 +515.3 515296 13.2 HDGF PKNOX1 ARNT CREB3L1 ZNF766 CBX5 FOS KLF13 ZNF263 MCM5 JARID2-AS1 JARID2 RNU6-793P LOC101928354 GC06M014748
GH06F015426 1.6 FANTOM5 Ensembl ENCODE 11.9 -187.3 -187305 20.0 HDGF PKNOX1 SIN3A FEZF1 ZNF2 ZNF143 FOS DEK ZNF263 REST JARID2 RNU6-522P RNU6-645P JARID2-AS1 DTNBP1 ENSG00000277411 GC06M015325
GH06F015621 1.7 FANTOM5 Ensembl ENCODE 10.7 -373.7 -373721 2.8 HDGF PKNOX1 ATF1 ARNT ZNF766 CBX5 GATA2 ZNF143 KLF13 ZNF263 JARID2 JARID2-AS1 DTNBP1 LOC105374947
GH06F015016 1.5 FANTOM5 Ensembl ENCODE 10.9 +230.8 230812 1.8 ATF1 PKNOX1 ARNT CREB3L1 ELK1 GATA2 KLF13 NCOA1 REST KAT8 JARID2 JARID2-AS1 LOC105374945 GC06M015081
GH06F014715 1.6 FANTOM5 Ensembl ENCODE 10.2 +529.1 529096 8.4 HDGF PKNOX1 ZNF766 ELK1 MCM3 TBX21 MEF2D MAFF PBX2 HMBOX1 RNU6-793P JARID2 JARID2-AS1 RNU7-133P LOC101928354 GC06M014748
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around JARID2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for JARID2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001211936 1596 5801 CREB3L1 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC SSRP1 ZNF610

Genomic Location for JARID2-AS1 Gene

Chromosome:
6
Start:
15,247,815 bp from pter
End:
15,248,696 bp from pter
Size:
882 bases
Orientation:
Minus strand

Genomic View for JARID2-AS1 Gene

Genes around JARID2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
JARID2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for JARID2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for JARID2-AS1 Gene

Proteins for JARID2-AS1 Gene

Post-translational modifications for JARID2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for JARID2-AS1 Gene

Domains & Families for JARID2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for JARID2-AS1 Gene

Function for JARID2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for JARID2-AS1 Gene

Localization for JARID2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for JARID2-AS1 Gene

Pathways & Interactions for JARID2-AS1 Gene

SuperPathways for JARID2-AS1 Gene

No Data Available

Interacting Proteins for JARID2-AS1 Gene

Gene Ontology (GO) - Biological Process for JARID2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for JARID2-AS1 Gene

Transcripts for JARID2-AS1 Gene

mRNA/cDNA for JARID2-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for JARID2-AS1 Gene

JARID2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for JARID2-AS1 Gene

No ASD Table

Relevant External Links for JARID2-AS1 Gene

GeneLoc Exon Structure for
JARID2-AS1
ECgene alternative splicing isoforms for
JARID2-AS1

Expression for JARID2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for JARID2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for JARID2-AS1 Gene

This gene is overexpressed in Testis (x36.5).

SOURCE GeneReport for Unigene cluster for JARID2-AS1 Gene:

Hs.664092
genes like me logo Genes that share expression patterns with JARID2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for JARID2-AS1 Gene

Orthologs for JARID2-AS1 Gene

Evolution for JARID2-AS1 Gene

ENSEMBL:
Gene Tree for JARID2-AS1 (if available)
TreeFam:
Gene Tree for JARID2-AS1 (if available)

No data available for Orthologs for JARID2-AS1 Gene

Paralogs for JARID2-AS1 Gene

No data available for Paralogs for JARID2-AS1 Gene

Variants for JARID2-AS1 Gene

Sequence variations from dbSNP and Humsavar for JARID2-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs10712805 -- 15,247,437(+) GTGGC(-/T)TTTTT intron-variant, downstream-variant-500B, upstream-variant-2KB
rs111928694 -- 15,248,133(+) CCCGT(C/G)GCTGG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs113213471 -- 15,248,337(+) ACCGG(G/T)CTACC intron-variant, upstream-variant-2KB
rs114409942 -- 15,247,991(+) ATGGG(A/G)TAGAA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs114836551 -- 15,250,216(+) TGGAA(A/G)AAGTT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for JARID2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv27933 CNV loss 19812545
nsv1144133 CNV deletion 24896259
nsv830594 CNV loss 17160897
nsv950773 CNV deletion 24416366

Relevant External Links for JARID2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
JARID2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for JARID2-AS1 Gene

Disorders for JARID2-AS1 Gene

Relevant External Links for JARID2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
JARID2-AS1

No disorders were found for JARID2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for JARID2-AS1 Gene

Publications for JARID2-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for JARID2-AS1 Gene

Sources for JARID2-AS1 Gene

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