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Aliases for JAKMIP2-AS1 Gene

Subcategory (RNA class) for JAKMIP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for JAKMIP2-AS1 Gene

  • JAKMIP2 Antisense RNA 1 2 3 5
  • JAKMIP2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for JAKMIP2-AS1 Gene

Previous GeneCards Identifiers for JAKMIP2-AS1 Gene

  • GC05U901644
  • GC05P146942

Summaries for JAKMIP2-AS1 Gene

GeneCards Summary for JAKMIP2-AS1 Gene

JAKMIP2-AS1 (JAKMIP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for JAKMIP2-AS1 Gene

Genomics for JAKMIP2-AS1 Gene

Regulatory Elements for JAKMIP2-AS1 Gene

Enhancers for JAKMIP2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F147558 0.7 Ensembl ENCODE 0.8 -1.5 -1528 0.8 CEBPB TRIM22 CEBPG DPYSL3 LOC105378217 STK32A JAKMIP2-AS1 PIR44601
GH05F147565 1.3 FANTOM5 Ensembl ENCODE 0.4 +7.8 7756 4.4 CTCF USF1 CBX3 RAD21 ZNF664 POLR2A SMC3 HNF4G FOS MAFK JAKMIP2 DPYSL3 JAKMIP2-AS1 LOC101927012
GH05F147559 0.6 ENCODE 0.8 -1.0 -962 0.2 CTCF ZNF654 SMC3 TRIM22 RAD21 DPYSL3 LOC105378217 STK32A JAKMIP2-AS1 PIR44601
GH05F147560 0.6 ENCODE 0.8 +0.9 891 2.1 CTCF BCL11A POLR2A TEAD4 RAD21 DPYSL3 LOC105378217 STK32A JAKMIP2-AS1 LOC101927012
GH05F147552 1.1 FANTOM5 Ensembl ENCODE 0.4 -5.7 -5653 3.6 JUND RFX1 HLF SIN3A DPYSL3 LOC105378217 STK32A JAKMIP2-AS1 PIR44601
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around JAKMIP2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for JAKMIP2-AS1 Gene

Chromosome:
5
Start:
147,559,994 bp from pter
End:
147,662,009 bp from pter
Size:
102,016 bases
Orientation:
Plus strand

Genomic View for JAKMIP2-AS1 Gene

Genes around JAKMIP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
JAKMIP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for JAKMIP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for JAKMIP2-AS1 Gene

Proteins for JAKMIP2-AS1 Gene

Post-translational modifications for JAKMIP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for JAKMIP2-AS1 Gene

Domains & Families for JAKMIP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for JAKMIP2-AS1 Gene

Function for JAKMIP2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for JAKMIP2-AS1 Gene

Localization for JAKMIP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for JAKMIP2-AS1 Gene

Pathways & Interactions for JAKMIP2-AS1 Gene

SuperPathways for JAKMIP2-AS1 Gene

No Data Available

Interacting Proteins for JAKMIP2-AS1 Gene

Gene Ontology (GO) - Biological Process for JAKMIP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for JAKMIP2-AS1 Gene

Transcripts for JAKMIP2-AS1 Gene

mRNA/cDNA for JAKMIP2-AS1 Gene

(2) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for JAKMIP2-AS1 Gene

JAKMIP2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for JAKMIP2-AS1 Gene

No ASD Table

Relevant External Links for JAKMIP2-AS1 Gene

GeneLoc Exon Structure for
JAKMIP2-AS1
ECgene alternative splicing isoforms for
JAKMIP2-AS1

Expression for JAKMIP2-AS1 Gene

SOURCE GeneReport for Unigene cluster for JAKMIP2-AS1 Gene:

Hs.184323
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for JAKMIP2-AS1 Gene

Orthologs for JAKMIP2-AS1 Gene

Evolution for JAKMIP2-AS1 Gene

ENSEMBL:
Gene Tree for JAKMIP2-AS1 (if available)
TreeFam:
Gene Tree for JAKMIP2-AS1 (if available)

No data available for Orthologs for JAKMIP2-AS1 Gene

Paralogs for JAKMIP2-AS1 Gene

No data available for Paralogs for JAKMIP2-AS1 Gene

Variants for JAKMIP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for JAKMIP2-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1002921 -- 147,643,419(-) TTCTG(A/T)GAATG intron-variant
rs10035605 -- 147,569,579(+) CTTGC(G/T)CTGTC intron-variant
rs10035908 -- 147,564,818(+) taTTG(A/G)CAAAT intron-variant
rs10037567 -- 147,610,620(+) gtcga(A/C)ccctc intron-variant
rs10038603 -- 147,608,908(+) gcatc(A/G)atctc intron-variant

Structural Variations from Database of Genomic Variants (DGV) for JAKMIP2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1978895 CNV deletion 18987734
esv2730890 CNV deletion 23290073
esv2730891 CNV deletion 23290073
esv2730892 CNV deletion 23290073
esv2730893 CNV deletion 23290073

Relevant External Links for JAKMIP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
JAKMIP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for JAKMIP2-AS1 Gene

Disorders for JAKMIP2-AS1 Gene

Relevant External Links for JAKMIP2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
JAKMIP2-AS1

No disorders were found for JAKMIP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for JAKMIP2-AS1 Gene

Publications for JAKMIP2-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for JAKMIP2-AS1 Gene

Sources for JAKMIP2-AS1 Gene

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