Free for academic non-profit institutions. Other users need a Commercial license

Aliases for IZUMO1 Gene

Aliases for IZUMO1 Gene

  • Izumo Sperm-Egg Fusion 1 2 3 5
  • Oocyte Binding/Fusion Factor 2 3 4
  • Sperm-Specific Protein Izumo 3 4
  • OBF 3 4
  • Izumo Sperm-Egg Fusion Protein 1 3
  • IZUMO 3

External Ids for IZUMO1 Gene

Previous GeneCards Identifiers for IZUMO1 Gene

  • GC19M053939
  • GC19M049244
  • GC19M045623

Summaries for IZUMO1 Gene

Entrez Gene Summary for IZUMO1 Gene

  • The sperm-specific protein Izumo, named for a Japanese shrine dedicated to marriage, is essential for sperm-egg plasma membrane binding and fusion (Inoue et al., 2005 [PubMed 15759005]).[supplied by OMIM, Mar 2008]

GeneCards Summary for IZUMO1 Gene

IZUMO1 (Izumo Sperm-Egg Fusion 1) is a Protein Coding gene. Diseases associated with IZUMO1 include Hajdu-Cheney Syndrome and Glaucoma 1, Open Angle, E. Among its related pathways are Fertilization. GO annotations related to this gene include protein homodimerization activity and receptor binding.

UniProtKB/Swiss-Prot for IZUMO1 Gene

  • Essential sperm cell-surface protein required for fertilization by acting as a ligand for IZUMO1R/JUNO receptor on egg. The IZUMO1:IZUMO1R/JUNO interaction is a necessary adhesion event between sperm and egg that is required for fertilization but is not sufficient for cell fusion. The ligand-receptor interaction probably does not act as a membrane fusogen.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for IZUMO1 Gene

Genomics for IZUMO1 Gene

Regulatory Elements for IZUMO1 Gene

Enhancers for IZUMO1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G048712 1.6 Ensembl ENCODE dbSUPER 35.4 +30.5 30450 8.8 HDGF PKNOX1 MLX CREB3L1 AGO1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B FUT2 IZUMO1 RASIP1 GRWD1 NOP53-AS1 NTN5 MAMSTR GC19M048703
GH19G048736 1.3 ENCODE dbSUPER 27.1 +8.1 8067 5.5 HDGF PKNOX1 FOXA2 ARNT CREB3L1 AGO1 SIN3A ZNF766 ZNF143 KLF13 FUT2 IZUMO1 DBP SEC1P PRR12 RASIP1 MAMSTR
GH19G048746 1.3 ENCODE dbSUPER 27 +0.4 427 1.9 PKNOX1 ATF1 CREB3L1 ZNF133 YY1 ETS1 TCF12 ZNF121 ZNF766 GLIS2 FUT2 IZUMO1 RASIP1
GH19G048958 2.1 FANTOM5 Ensembl ENCODE dbSUPER 16.7 -216.4 -216380 10.2 MLX CREB3L1 AGO1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 PPP1R15A PRR12 NUP62 IZUMO1 RUVBL2 CA11 SEC1P SNORD35B C19orf68 ALDH16A1
GH19G048724 1.5 Ensembl ENCODE dbSUPER 19.6 +21.8 21849 3.5 HDGF ATF1 CREB3L1 ETS1 ZNF766 ELK1 ZNF143 FOS SP3 YY2 FUT2 PRR12 IZUMO1 ADM5 FUT1 FGF21 PIH1D1 DBP SEC1P BCAT2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around IZUMO1 on UCSC Golden Path with GeneCards custom track

Promoters for IZUMO1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000110767 550 601 PKNOX1 ATF1 CREB3L1 ZNF133 YY1 ETS1 ZNF766 GLIS2 ELK1 ZNF143

Genomic Location for IZUMO1 Gene

Chromosome:
19
Start:
48,740,852 bp from pter
End:
48,747,650 bp from pter
Size:
6,799 bases
Orientation:
Minus strand

Genomic View for IZUMO1 Gene

Genes around IZUMO1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
IZUMO1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for IZUMO1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for IZUMO1 Gene

Proteins for IZUMO1 Gene

  • Protein details for IZUMO1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IYV9-IZUM1_HUMAN
    Recommended name:
    Izumo sperm-egg fusion protein 1
    Protein Accession:
    Q8IYV9
    Secondary Accessions:
    • Q6Q8P6
    • Q6Q8P7

    Protein attributes for IZUMO1 Gene

    Size:
    350 amino acids
    Molecular mass:
    38930 Da
    Quaternary structure:
    • Monomer (PubMed:27309818, PubMed:27309808). Monomer, homodimer and homooligomer (By similarity). Interacts with IZUMO1R/JUNO. IZUMO1 and IZUMO1R/JUNO form a complex with 1:1 stoichiometry (PubMed:27309818, PubMed:27309808).
    Miscellaneous:
    • Izumo is the name of a Japanese shrine to marriage.

    Three dimensional structures from OCA and Proteopedia for IZUMO1 Gene

    Alternative splice isoforms for IZUMO1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for IZUMO1 Gene

Post-translational modifications for IZUMO1 Gene

No data available for DME Specific Peptides for IZUMO1 Gene

Domains & Families for IZUMO1 Gene

Protein Domains for IZUMO1 Gene

Suggested Antigen Peptide Sequences for IZUMO1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8IYV9

UniProtKB/Swiss-Prot:

IZUM1_HUMAN :
  • The extracellular domain assumes a distinct boomerang shape when not bound to IZUMO1R/JUNO. Interaction with IZUMO1R/JUNO triggers a conformation change, so that the IZUMO1 extracellular domain assumes an upright conformation.
  • Belongs to the Izumo family.
Domain:
  • The extracellular domain assumes a distinct boomerang shape when not bound to IZUMO1R/JUNO. Interaction with IZUMO1R/JUNO triggers a conformation change, so that the IZUMO1 extracellular domain assumes an upright conformation.
Family:
  • Belongs to the Izumo family.
genes like me logo Genes that share domains with IZUMO1: view

Function for IZUMO1 Gene

Molecular function for IZUMO1 Gene

UniProtKB/Swiss-Prot Function:
Essential sperm cell-surface protein required for fertilization by acting as a ligand for IZUMO1R/JUNO receptor on egg. The IZUMO1:IZUMO1R/JUNO interaction is a necessary adhesion event between sperm and egg that is required for fertilization but is not sufficient for cell fusion. The ligand-receptor interaction probably does not act as a membrane fusogen.

Gene Ontology (GO) - Molecular Function for IZUMO1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005102 receptor binding IPI 24739963
GO:0005515 protein binding IPI 27309808
GO:0042803 protein homodimerization activity ISS --
GO:0086080 protein binding involved in heterotypic cell-cell adhesion ISS --
genes like me logo Genes that share ontologies with IZUMO1: view

Phenotypes for IZUMO1 Gene

genes like me logo Genes that share phenotypes with IZUMO1: view

Animal Models for IZUMO1 Gene

MGI Knock Outs for IZUMO1:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , miRNA , Transcription Factor Targets and HOMER Transcription for IZUMO1 Gene

Localization for IZUMO1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for IZUMO1 Gene

Cell membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for IZUMO1 gene
Compartment Confidence
plasma membrane 5
extracellular 1
peroxisome 1
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for IZUMO1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002080 acrosomal membrane IEA --
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IDA 15759005
genes like me logo Genes that share ontologies with IZUMO1: view

Pathways & Interactions for IZUMO1 Gene

SuperPathways for IZUMO1 Gene

SuperPathway Contained pathways
1 Fertilization
genes like me logo Genes that share pathways with IZUMO1: view

Pathways by source for IZUMO1 Gene

3 Reactome pathways for IZUMO1 Gene

Interacting Proteins for IZUMO1 Gene

Gene Ontology (GO) - Biological Process for IZUMO1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007155 cell adhesion IC 15759005
GO:0007338 single fertilization ISS --
GO:0007342 fusion of sperm to egg plasma membrane TAS --
GO:0034113 heterotypic cell-cell adhesion ISS --
GO:0035036 sperm-egg recognition ISS --
genes like me logo Genes that share ontologies with IZUMO1: view

No data available for SIGNOR curated interactions for IZUMO1 Gene

Transcripts for IZUMO1 Gene

Unigene Clusters for IZUMO1 Gene

Izumo sperm-egg fusion 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for IZUMO1 Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9 ^ 10a · 10b
SP1: - -
SP2: - -
SP3: -

Relevant External Links for IZUMO1 Gene

GeneLoc Exon Structure for
IZUMO1
ECgene alternative splicing isoforms for
IZUMO1

Expression for IZUMO1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for IZUMO1 Gene

mRNA differential expression in normal tissues according to GTEx for IZUMO1 Gene

This gene is overexpressed in Testis (x24.3), Pancreas (x7.4), and Stomach (x4.5).

NURSA nuclear receptor signaling pathways regulating expression of IZUMO1 Gene:

IZUMO1

SOURCE GeneReport for Unigene cluster for IZUMO1 Gene:

Hs.400688

mRNA Expression by UniProt/SwissProt for IZUMO1 Gene:

Q8IYV9-IZUM1_HUMAN
Tissue specificity: Sperm-specific (at protein level). Detectable on sperm surface only after the acrosome reaction.

Evidence on tissue expression from TISSUES for IZUMO1 Gene

  • Nervous system(4)
genes like me logo Genes that share expression patterns with IZUMO1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for IZUMO1 Gene

Orthologs for IZUMO1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for IZUMO1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia IZUMO1 34 35
  • 99.24 (n)
cow
(Bos Taurus)
Mammalia IZUMO1 34 35
  • 77.38 (n)
rat
(Rattus norvegicus)
Mammalia Izumo1 34
  • 69.35 (n)
mouse
(Mus musculus)
Mammalia Izumo1 34 16 35
  • 65.13 (n)
dog
(Canis familiaris)
Mammalia IZUMO1 35
  • 44 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 41 (a)
OneToMany
-- 35
  • 31 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia IZUMO1 35
  • 31 (a)
OneToOne
Species where no ortholog for IZUMO1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for IZUMO1 Gene

ENSEMBL:
Gene Tree for IZUMO1 (if available)
TreeFam:
Gene Tree for IZUMO1 (if available)

Paralogs for IZUMO1 Gene

No data available for Paralogs for IZUMO1 Gene

Variants for IZUMO1 Gene

Sequence variations from dbSNP and Humsavar for IZUMO1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000099034 -- 48,748,486(+) CCAAC(C/T)TCCTT intron-variant, upstream-variant-2KB, utr-variant-3-prime
rs1000154500 -- 48,742,383(+) CGCTC(G/T)GTCGC intron-variant, upstream-variant-2KB
rs1000302332 -- 48,748,251(+) ACCTC(A/G)TGCTC intron-variant, upstream-variant-2KB, utr-variant-3-prime
rs1000330236 -- 48,748,481(+) AAAGA(C/T)CAACT intron-variant, upstream-variant-2KB, utr-variant-3-prime
rs1001275986 -- 48,740,742(+) GGAAT(G/T)ACATC nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for IZUMO1 Gene

Variant ID Type Subtype PubMed ID
nsv9739 CNV gain+loss 18304495

Variation tolerance for IZUMO1 Gene

Residual Variation Intolerance Score: 24.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.29; 6.46% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for IZUMO1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
IZUMO1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for IZUMO1 Gene

Disorders for IZUMO1 Gene

MalaCards: The human disease database

(3) MalaCards diseases for IZUMO1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
hajdu-cheney syndrome
  • acroosteolysis dominant type
glaucoma 1, open angle, e
  • primary open angle glaucoma
borderline glaucoma
  • preglaucoma
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for IZUMO1

Genetic Association Database (GAD)
IZUMO1
Human Genome Epidemiology (HuGE) Navigator
IZUMO1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
IZUMO1
genes like me logo Genes that share disorders with IZUMO1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for IZUMO1 Gene

Publications for IZUMO1 Gene

  1. The immunoglobulin superfamily protein Izumo is required for sperm to fuse with eggs. (PMID: 15759005) Inoue N. … Okabe M. (Nature 2005) 2 3 4 22 64
  2. Preliminary study on the role of the human IZUMO gene in oocyte- spermatozoa fusion failure. (PMID: 18082733) Granados-Gonzalez V. … Levy R. (Fertil. Steril. 2008) 3 4 46 64
  3. Structure of IZUMO1-JUNO reveals sperm-oocyte recognition during mammalian fertilization. (PMID: 27309808) Ohto U. … Shimizu T. (Nature 2016) 3 4 64
  4. Molecular architecture of the human sperm IZUMO1 and egg JUNO fertilization complex. (PMID: 27309818) Aydin H. … Lee J.E. (Nature 2016) 3 4 64
  5. Positive Selection and the Evolution of izumo Genes in Mammals. (PMID: 22957301) Grayson P. … Civetta A. (Int J Evol Biol 2012) 2 3 64

Products for IZUMO1 Gene

Sources for IZUMO1 Gene

Content
Loading form....