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Aliases for ITPR1-AS1 Gene

Subcategory (RNA class) for ITPR1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ITPR1-AS1 Gene

  • ITPR1 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for ITPR1-AS1 Gene

Summaries for ITPR1-AS1 Gene

GeneCards Summary for ITPR1-AS1 Gene

ITPR1-AS1 (ITPR1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ITPR1-AS1 Gene

Genomics for ITPR1-AS1 Gene

Regulatory Elements for ITPR1-AS1 Gene

Enhancers for ITPR1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F004530 1.3 Ensembl ENCODE 12.4 -39.6 -39638 4.8 PKNOX1 ARNT CREB3L1 ZFP64 ARID4B FEZF1 ZNF416 FOS ZNF263 JUNB ITPR1 ITPR1-AS1 LOC105376933
GH03F004570 1.1 Ensembl ENCODE 12.9 -78.3 -78295 1.5 PKNOX1 ZNF48 RAD21 RARA FOS CREM MIXL1 THAP11 MXD4 REST ITPR1 ITPR1-AS1 LOC105376933
GH03F004580 1.1 Ensembl ENCODE 11.9 -89.9 -89919 5.4 PKNOX1 WRNIP1 FEZF1 RAD21 EGR2 ZNF362 REST TBX21 SMARCA4 IKZF1 ITPR1 ITPR1-AS1 LOC105376933
GH03F004512 1 Ensembl ENCODE 12.1 -20.0 -20036 1.0 SOX13 ELF3 PKNOX1 SAP130 ARID4B ZIC2 GATA4 ZBTB48 PRDM10 ZNF600 ITPR1 SUMF1 ITPR1-AS1 LOC105376933
GH03F004905 1.1 Ensembl ENCODE 10.7 -413.0 -412973 1.7 PKNOX1 ZFP64 INSM2 FEZF1 ZNF680 ZNF654 ZBTB11 OVOL3 CEBPB ZNF645 UBTFL8 ENSG00000230944 SETMAR ITPR1-AS1 EDEM1 BHLHE40-AS1 ENSG00000235978 GC03M004976
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ITPR1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ITPR1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001356257 -537 3801 HDGF PKNOX1 CREB3L1 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2

Genomic Location for ITPR1-AS1 Gene

Chromosome:
3
Start:
4,490,317 bp from pter
End:
4,493,163 bp from pter
Size:
2,847 bases
Orientation:
Minus strand

Genomic View for ITPR1-AS1 Gene

Genes around ITPR1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ITPR1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ITPR1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ITPR1-AS1 Gene

Proteins for ITPR1-AS1 Gene

Post-translational modifications for ITPR1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ITPR1-AS1 Gene

Domains & Families for ITPR1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ITPR1-AS1 Gene

Function for ITPR1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ITPR1-AS1 Gene

Localization for ITPR1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ITPR1-AS1 Gene

Pathways & Interactions for ITPR1-AS1 Gene

SuperPathways for ITPR1-AS1 Gene

No Data Available

Interacting Proteins for ITPR1-AS1 Gene

Gene Ontology (GO) - Biological Process for ITPR1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ITPR1-AS1 Gene

Transcripts for ITPR1-AS1 Gene

mRNA/cDNA for ITPR1-AS1 Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ITPR1-AS1 Gene

ITPR1 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ITPR1-AS1 Gene

No ASD Table

Relevant External Links for ITPR1-AS1 Gene

GeneLoc Exon Structure for
ITPR1-AS1
ECgene alternative splicing isoforms for
ITPR1-AS1

Expression for ITPR1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ITPR1-AS1 Gene

SOURCE GeneReport for Unigene cluster for ITPR1-AS1 Gene:

Hs.190365
genes like me logo Genes that share expression patterns with ITPR1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ITPR1-AS1 Gene

Orthologs for ITPR1-AS1 Gene

Evolution for ITPR1-AS1 Gene

ENSEMBL:
Gene Tree for ITPR1-AS1 (if available)
TreeFam:
Gene Tree for ITPR1-AS1 (if available)

No data available for Orthologs for ITPR1-AS1 Gene

Paralogs for ITPR1-AS1 Gene

No data available for Paralogs for ITPR1-AS1 Gene

Variants for ITPR1-AS1 Gene

Sequence variations from dbSNP and Humsavar for ITPR1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs111360041 -- 4,493,343(+) GCTTT(A/G)AAGTG upstream-variant-2KB
rs113250156 -- 4,489,900(+) TTCTC(C/T)GATCC downstream-variant-500B
rs113654208 -- 4,492,374(+) GGCTT(A/G)GCTCT intron-variant, upstream-variant-2KB
rs114339152 -- 4,490,527(+) ATAGA(A/C)AATTC nc-transcript-variant
rs114369820 -- 4,491,979(+) ACACG(C/T)AGAGT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ITPR1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2422450 CNV deletion 17116639

Relevant External Links for ITPR1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ITPR1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ITPR1-AS1 Gene

Disorders for ITPR1-AS1 Gene

Relevant External Links for ITPR1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ITPR1-AS1

No disorders were found for ITPR1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ITPR1-AS1 Gene

Publications for ITPR1-AS1 Gene

No publications were found for ITPR1-AS1 Gene.

Products for ITPR1-AS1 Gene

Sources for ITPR1-AS1 Gene

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