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Aliases for ITPKB-IT1 Gene

Subcategory (RNA class) for ITPKB-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for ITPKB-IT1 Gene

  • ITPKB Intronic Transcript 1 2 3 5
  • ITPKB Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for ITPKB-IT1 Gene

Previous GeneCards Identifiers for ITPKB-IT1 Gene

  • GC01M226863

Summaries for ITPKB-IT1 Gene

GeneCards Summary for ITPKB-IT1 Gene

ITPKB-IT1 (ITPKB Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ITPKB-IT1 Gene

Genomics for ITPKB-IT1 Gene

Regulatory Elements for ITPKB-IT1 Gene

Enhancers for ITPKB-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F226671 1.5 FANTOM5 ENCODE 0.8 -3.0 -2995 12.7 HDGF PKNOX1 CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF766 ITPKB RPL34P7 LOC100126822 ENSG00000234277 STUM ITPKB-IT1 LOC105373117
GH01F226686 1.6 FANTOM5 Ensembl ENCODE 0.4 -14.9 -14918 8.0 ATF1 PKNOX1 SIN3A GLI4 GLIS2 FOS ZNF263 SP3 JUNB ZHX2 ITPKB ITPKB-AS1 STUM LOC105373117 ITPKB-IT1
GH01F226695 1.4 FANTOM5 Ensembl ENCODE 0.3 -22.4 -22443 3.7 PKNOX1 ZNF366 SCRT2 CREM EGR2 ZNF263 ZNF202 NR2F2 ZNF217 ZFP69B ITPKB ENSG00000234478 ACBD3 H3F3A PSEN2 LOC105373117 ITPKB-IT1
GH01F226672 0.5 ENCODE 0.8 +3.6 3554 0.2 OSR2 RFX1 SCRT2 TCF7L2 ITPKB-AS1 ITPKB-IT1
GH01F226685 0.4 Ensembl 0.4 -10.6 -10633 0.2 SCRT2 LOC105373117 ITPKB-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ITPKB-IT1 on UCSC Golden Path with GeneCards custom track

Promoters for ITPKB-IT1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for ITPKB-IT1 Gene

226,656,080 bp from pter
226,675,068 bp from pter
18,989 bases
Minus strand

Genomic View for ITPKB-IT1 Gene

Genes around ITPKB-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ITPKB-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ITPKB-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ITPKB-IT1 Gene

Proteins for ITPKB-IT1 Gene

Post-translational modifications for ITPKB-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ITPKB-IT1 Gene

Domains & Families for ITPKB-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ITPKB-IT1 Gene

Function for ITPKB-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ITPKB-IT1 Gene

Localization for ITPKB-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ITPKB-IT1 Gene

Pathways & Interactions for ITPKB-IT1 Gene

SuperPathways for ITPKB-IT1 Gene

No Data Available

Interacting Proteins for ITPKB-IT1 Gene

Gene Ontology (GO) - Biological Process for ITPKB-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for ITPKB-IT1 Gene

Transcripts for ITPKB-IT1 Gene

mRNA/cDNA for ITPKB-IT1 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ITPKB-IT1 Gene

ITPKB intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ITPKB-IT1 Gene

No ASD Table

Relevant External Links for ITPKB-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ITPKB-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ITPKB-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for ITPKB-IT1 Gene

This gene is overexpressed in Whole Blood (x28.6) and Spleen (x4.4).

SOURCE GeneReport for Unigene cluster for ITPKB-IT1 Gene:

genes like me logo Genes that share expression patterns with ITPKB-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ITPKB-IT1 Gene

Orthologs for ITPKB-IT1 Gene

Evolution for ITPKB-IT1 Gene

Gene Tree for ITPKB-IT1 (if available)
Gene Tree for ITPKB-IT1 (if available)

No data available for Orthologs for ITPKB-IT1 Gene

Paralogs for ITPKB-IT1 Gene

No data available for Paralogs for ITPKB-IT1 Gene

Variants for ITPKB-IT1 Gene

Sequence variations from dbSNP and Humsavar for ITPKB-IT1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10916025 -- 226,668,188(+) TTCTT(C/G)ACTTT intron-variant
rs112063861 -- 226,658,757(+) CCCAT(A/C/G)AGCGT intron-variant
rs113055577 -- 226,664,129(+) GACTT(C/G)TTTCA intron-variant
rs113264753 -- 226,673,102(+) TGCAG(C/T)AGCTC intron-variant
rs113310699 -- 226,658,323(+) TGGGT(A/G)CAAGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ITPKB-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv522446 CNV loss 19592680

Relevant External Links for ITPKB-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ITPKB-IT1 Gene

Disorders for ITPKB-IT1 Gene

Relevant External Links for ITPKB-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for ITPKB-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ITPKB-IT1 Gene

Publications for ITPKB-IT1 Gene

  1. Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. (PMID: 22589738) Fox C.S. … Borecki I.B. (PLoS Genet. 2012) 3 64

Products for ITPKB-IT1 Gene

Sources for ITPKB-IT1 Gene

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