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Aliases for ITPKB-IT1 Gene

Subcategory (RNA class) for ITPKB-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ITPKB-IT1 Gene

  • ITPKB Intronic Transcript 1 2 3 5
  • ITPKB Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for ITPKB-IT1 Gene

Previous GeneCards Identifiers for ITPKB-IT1 Gene

  • GC01M226863

Summaries for ITPKB-IT1 Gene

GeneCards Summary for ITPKB-IT1 Gene

ITPKB-IT1 (ITPKB Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ITPKB-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ITPKB-IT1 Gene

Genomics for ITPKB-IT1 Gene

Regulatory Elements for ITPKB-IT1 Gene

Enhancers for ITPKB-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H226671 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -3.0 -2995 12 HDGF PKNOX1 ATF1 FEZF1 ZNF2 ZNF121 ATF7 RUNX3 SP3 GLIS1 ITPKB STUM ITPKB-IT1 LOC105373117
GH01H226686 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -14.9 -14920 7 CTCF MAZ JUN ZSCAN4 EBF1 ZIC2 NR2F2 JUND IKZF1 FOXP2 ITPKB ITPKB-AS1 STUM LOC105373117 ITPKB-IT1
GH01H226672 0.8 ENCODE dbSUPER 0.7 +3.6 3554 0 OSR2 GATA3 RFX1 SCRT2 TCF7L2 FOXA1 ITPKB-AS1 ITPKB-IT1
GH01H226695 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -22.4 -22443 3 PKNOX1 ESRRA MAX ZMYM3 EBF1 RFX5 CTBP1 GATA3 ZNF366 EED ITPKB H3F3A PSEN2 LOC105373117 ITPKB-IT1
GH01H226684 0.4 dbSUPER 0.4 -10.3 -10287 1 SCRT2 ITPKB ITPKB-IT1 LOC105373117
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ITPKB-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ITPKB-IT1 Gene

Chromosome:
1
Start:
226,656,080 bp from pter
End:
226,675,068 bp from pter
Size:
18,989 bases
Orientation:
Minus strand

Genomic View for ITPKB-IT1 Gene

Genes around ITPKB-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ITPKB-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ITPKB-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ITPKB-IT1 Gene

Proteins for ITPKB-IT1 Gene

Post-translational modifications for ITPKB-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ITPKB-IT1 Gene

Domains & Families for ITPKB-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ITPKB-IT1 Gene

Function for ITPKB-IT1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for ITPKB-IT1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ITPKB-IT1 Gene

Localization for ITPKB-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ITPKB-IT1 Gene

Pathways & Interactions for ITPKB-IT1 Gene

SuperPathways for ITPKB-IT1 Gene

No Data Available

Interacting Proteins for ITPKB-IT1 Gene

Gene Ontology (GO) - Biological Process for ITPKB-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ITPKB-IT1 Gene

Drugs & Compounds for ITPKB-IT1 Gene

No Compound Related Data Available

Transcripts for ITPKB-IT1 Gene

mRNA/cDNA for ITPKB-IT1 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ITPKB-IT1 Gene

ITPKB intronic transcript 1 (non-protein coding):
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for ITPKB-IT1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for ITPKB-IT1 Gene

No ASD Table

Relevant External Links for ITPKB-IT1 Gene

GeneLoc Exon Structure for
ITPKB-IT1
ECgene alternative splicing isoforms for
ITPKB-IT1

Expression for ITPKB-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ITPKB-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for ITPKB-IT1 Gene

This gene is overexpressed in Whole Blood (x28.6) and Spleen (x4.4).

SOURCE GeneReport for Unigene cluster for ITPKB-IT1 Gene:

Hs.664293
genes like me logo Genes that share expression patterns with ITPKB-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ITPKB-IT1 Gene

Orthologs for ITPKB-IT1 Gene

Evolution for ITPKB-IT1 Gene

ENSEMBL:
Gene Tree for ITPKB-IT1 (if available)
TreeFam:
Gene Tree for ITPKB-IT1 (if available)

No data available for Orthologs for ITPKB-IT1 Gene

Paralogs for ITPKB-IT1 Gene

No data available for Paralogs for ITPKB-IT1 Gene

Variants for ITPKB-IT1 Gene

Sequence variations from dbSNP and Humsavar for ITPKB-IT1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000066237 -- 226,668,116(+) GATTC(C/T)GATTT intron-variant
rs1000143885 -- 226,669,578(+) ATAAC(A/G)GAGAA intron-variant
rs1000169594 -- 226,661,470(+) TGGCT(A/G)CGGAT intron-variant
rs1000347318 -- 226,674,242(+) TTGCC(C/T)AGGCT intron-variant
rs1000399651 -- 226,674,044(+) AGTTG(A/C)CACCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ITPKB-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv522446 CNV loss 19592680

Relevant External Links for ITPKB-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ITPKB-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ITPKB-IT1 Gene

Disorders for ITPKB-IT1 Gene

Relevant External Links for ITPKB-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ITPKB-IT1

No disorders were found for ITPKB-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ITPKB-IT1 Gene

Publications for ITPKB-IT1 Gene

  1. Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. (PMID: 22589738) Fox CS … Borecki IB (PLoS genetics 2012) 3 60

Products for ITPKB-IT1 Gene

Sources for ITPKB-IT1 Gene

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