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Aliases for ITM2BP1 Gene

Subcategory (RNA class) for ITM2BP1 Gene

antisense

Aliases for ITM2BP1 Gene

  • Integral Membrane Protein 2B Pseudogene 1 2 3
  • Integral Membrane Protein 2B Pseudogene 2
  • HsT33912 3
  • ITM2BP 3

External Ids for ITM2BP1 Gene

ORGUL Members for ITM2BP1 Gene

Previous HGNC Symbols for ITM2BP1 Gene

  • ITM2BP

Previous GeneCards Identifiers for ITM2BP1 Gene

  • GC17U901287
  • GC17M025941

Summaries for ITM2BP1 Gene

GeneCards Summary for ITM2BP1 Gene

ITM2BP1 (Integral Membrane Protein 2B Pseudogene 1) is a Pseudogene, and is affiliated with the antisense RNA class.

Additional gene information for ITM2BP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ITM2BP1 Gene

Genomics for ITM2BP1 Gene

GeneHancer (GH) Regulatory Elements for ITM2BP1 Gene

Promoters and enhancers for ITM2BP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I027613 Enhancer 0.5 ENCODE 550.8 -0.4 -359 0.2 TCF12 TAL1 CBFA2T3 CBFA2T2 ITM2BP1 ENSG00000266728 KSR1
GH17I027237 Enhancer 1.6 FANTOM5 Ensembl ENCODE 49.8 +371.0 371012 8.8 HDGF PKNOX1 CLOCK ZFP64 ARID4B NEUROD1 SIN3A ZBTB7B IRF4 YY1 ENSG00000265246 ITM2BP1 WSB1 LGALS9 RPL34P31
GH17I028333 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 20.7 -723.6 -723615 5.9 HDGF PKNOX1 FOXA2 SMAD1 MLX ARID4B SIN3A DMAP1 ZNF2 ZBTB7B IFT20 TNFAIP1 SUPT6H ENSG00000264577 NUFIP2 ITM2BP1 RPL23A TMEM97 NEK8 POLDIP2
GH17I028597 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 22.4 -985.8 -985752 3 HDGF PKNOX1 CLOCK FOXA2 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 SPAG5 SPAG5-AS1 NUFIP2 SUPT6H ENSG00000264577 PHF12 SDF2 ENSG00000265908 ITM2BP1 PROCA1
GH17I028317 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 19.9 -706.1 -706117 3.7 HDGF MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B E2F8 TMEM97 KRT18P55 PIR55263 LOC101927018 SUPT6H NUFIP2 ENSG00000264577 PHF12 ENSG00000265908 ITM2BP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ITM2BP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ITM2BP1 Gene

Genomic Locations for ITM2BP1 Gene
chr17:27,612,573-27,613,251
(GRCh38/hg38)
Size:
679 bases
Orientation:
Minus strand
chr17:25,939,599-25,940,277
(GRCh37/hg19)

Genomic View for ITM2BP1 Gene

Genes around ITM2BP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ITM2BP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ITM2BP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ITM2BP1 Gene

Proteins for ITM2BP1 Gene

Post-translational modifications for ITM2BP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ITM2BP1 Gene

Domains & Families for ITM2BP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ITM2BP1 Gene

Function for ITM2BP1 Gene

Phenotypes From GWAS Catalog for ITM2BP1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ITM2BP1 Gene

Localization for ITM2BP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ITM2BP1 Gene

Pathways & Interactions for ITM2BP1 Gene

SuperPathways for ITM2BP1 Gene

No Data Available

Interacting Proteins for ITM2BP1 Gene

Gene Ontology (GO) - Biological Process for ITM2BP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ITM2BP1 Gene

Drugs & Compounds for ITM2BP1 Gene

No Compound Related Data Available

Transcripts for ITM2BP1 Gene

mRNA/cDNA for ITM2BP1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ITM2BP1 Gene

No ASD Table

Relevant External Links for ITM2BP1 Gene

GeneLoc Exon Structure for
ITM2BP1
ECgene alternative splicing isoforms for
ITM2BP1

Expression for ITM2BP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ITM2BP1 Gene

mRNA differential expression in normal tissues according to GTEx for ITM2BP1 Gene

This gene is overexpressed in Pancreas (x7.5).

NURSA nuclear receptor signaling pathways regulating expression of ITM2BP1 Gene:

ITM2BP1
genes like me logo Genes that share expression patterns with ITM2BP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ITM2BP1 Gene

Orthologs for ITM2BP1 Gene

Evolution for ITM2BP1 Gene

ENSEMBL:
Gene Tree for ITM2BP1 (if available)
TreeFam:
Gene Tree for ITM2BP1 (if available)

No data available for Orthologs for ITM2BP1 Gene

Paralogs for ITM2BP1 Gene

No data available for Paralogs for ITM2BP1 Gene

Variants for ITM2BP1 Gene

Additional Variant Information for ITM2BP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ITM2BP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ITM2BP1 Gene

Disorders for ITM2BP1 Gene

No disorders were found for ITM2BP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ITM2BP1 Gene

Publications for ITM2BP1 Gene

No publications were found for ITM2BP1 Gene.

Products for ITM2BP1 Gene

Sources for ITM2BP1 Gene

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