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Aliases for ITIH4-AS1 Gene

Subcategory (RNA class) for ITIH4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ITIH4-AS1 Gene

  • ITIH4 Antisense RNA 1 2 3 5
  • ITIH4 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ITIH4-AS1 Gene

Previous GeneCards Identifiers for ITIH4-AS1 Gene

  • GC00U933251
  • GC03P052858

Summaries for ITIH4-AS1 Gene

GeneCards Summary for ITIH4-AS1 Gene

ITIH4-AS1 (ITIH4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ITIH4-AS1 Gene

Genomics for ITIH4-AS1 Gene

Regulatory Elements for ITIH4-AS1 Gene

Enhancers for ITIH4-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F052847 0.2 ENCODE 11.8 +24.7 24674 1.9 JUND FOS ITIH4 ITIH1 ITIH4-AS1 ITIH3 ENSG00000279144 TMEM110-MUSTN1
GH03F052873 0.2 Ensembl 11.7 +51.0 50966 2.2 CTCF ESRRA BACH1 ZNF664 ZNF316 FOS NFE2 MAFK NFE2L2 HLF ITIH4 TMEM110 ITIH4-AS1 ITIH3 ITIH1 TMEM110-MUSTN1 MUSTN1 ENSG00000279144
GH03F052774 1.1 Ensembl ENCODE 11.3 -48.2 -48234 2.2 ATF1 MLX ARID4B YBX1 ZNF48 YY1 ZNF143 PAF1 PPARG KAT8 PBRM1 ITIH4-AS1 ITIH4 MUSTN1 TMEM110 TMEM110-MUSTN1 ITIH3 ITIH1 NEK4
GH03F052769 1 ENCODE 11.3 -53.0 -53048 2.1 ATF1 CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF48 ETS1 YY1 SLC30A9 PBRM1 ITIH3 RRP9 ITIH4-AS1 ITIH4 SNORD69 GNL3 MUSTN1 ENSG00000222345 ENSG00000252787
GH03F052890 1.1 FANTOM5 ENCODE 11.1 +68.7 68690 4.3 HDGF ATF1 MLX ARID4B DMAP1 ZSCAN9 RAD21 RARA YY1 FOS ITIH4 ITIH4-AS1 PBRM1 MUSTN1 SNORD69 ENSG00000222345 ENSG00000252787 SNORD19 SNORD19B GNL3
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ITIH4-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ITIH4-AS1 Gene

Chromosome:
3
Start:
52,823,935 bp from pter
End:
52,825,314 bp from pter
Size:
1,380 bases
Orientation:
Plus strand

Genomic View for ITIH4-AS1 Gene

Genes around ITIH4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ITIH4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ITIH4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ITIH4-AS1 Gene

Proteins for ITIH4-AS1 Gene

Post-translational modifications for ITIH4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ITIH4-AS1 Gene

Domains & Families for ITIH4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ITIH4-AS1 Gene

Function for ITIH4-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ITIH4-AS1 Gene

Localization for ITIH4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ITIH4-AS1 Gene

Pathways & Interactions for ITIH4-AS1 Gene

SuperPathways for ITIH4-AS1 Gene

No Data Available

Interacting Proteins for ITIH4-AS1 Gene

Gene Ontology (GO) - Biological Process for ITIH4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ITIH4-AS1 Gene

Transcripts for ITIH4-AS1 Gene

mRNA/cDNA for ITIH4-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ITIH4-AS1 Gene

No ASD Table

Relevant External Links for ITIH4-AS1 Gene

GeneLoc Exon Structure for
ITIH4-AS1
ECgene alternative splicing isoforms for
ITIH4-AS1

Expression for ITIH4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ITIH4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ITIH4-AS1 Gene

This gene is overexpressed in Liver (x42.3).
genes like me logo Genes that share expression patterns with ITIH4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ITIH4-AS1 Gene

Orthologs for ITIH4-AS1 Gene

Evolution for ITIH4-AS1 Gene

ENSEMBL:
Gene Tree for ITIH4-AS1 (if available)
TreeFam:
Gene Tree for ITIH4-AS1 (if available)

No data available for Orthologs for ITIH4-AS1 Gene

Paralogs for ITIH4-AS1 Gene

No data available for Paralogs for ITIH4-AS1 Gene

Variants for ITIH4-AS1 Gene

Sequence variations from dbSNP and Humsavar for ITIH4-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs111743679 -- 52,823,475(+) GGCAG(G/T)TCTGG intron-variant, upstream-variant-2KB
rs111809407 -- 52,823,820(+) ACTGG(C/G)ACCTG intron-variant, upstream-variant-2KB
rs112056587 -- 52,824,203(+) GGGTC(A/G)CCATC nc-transcript-variant, reference, synonymous-codon
rs112723318 -- 52,823,789(+) CCCAC(C/T)TCTCT intron-variant, upstream-variant-2KB
rs112986004 -- 52,824,265(+) GTTGC(C/T)GCTGT nc-transcript-variant, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for ITIH4-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2762328 CNV loss 21179565
nsv3822 CNV insertion 18451855
nsv508928 CNV insertion 20534489
nsv590308 CNV loss 21841781
nsv834698 CNV gain 17160897

Relevant External Links for ITIH4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ITIH4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ITIH4-AS1 Gene

Disorders for ITIH4-AS1 Gene

Relevant External Links for ITIH4-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ITIH4-AS1

No disorders were found for ITIH4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ITIH4-AS1 Gene

Publications for ITIH4-AS1 Gene

No publications were found for ITIH4-AS1 Gene.

Products for ITIH4-AS1 Gene

Sources for ITIH4-AS1 Gene

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