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Aliases for ITGB5-AS1 Gene

Subcategory (RNA class) for ITGB5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ITGB5-AS1 Gene

  • ITGB5 Antisense RNA 1 2 3 5
  • ITGB5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ITGB5-AS1 Gene

Previous GeneCards Identifiers for ITGB5-AS1 Gene

  • GC00U933617
  • GC03P124501

Summaries for ITGB5-AS1 Gene

GeneCards Summary for ITGB5-AS1 Gene

ITGB5-AS1 (ITGB5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ITGB5-AS1 Gene

Genomics for ITGB5-AS1 Gene

Regulatory Elements for ITGB5-AS1 Gene

Enhancers for ITGB5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G124831 2 FANTOM5 Ensembl ENCODE dbSUPER 11.8 +54.7 54703 9.5 FOXA2 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 FEZF1 YY1 CBX5 ITGB5 ITGB5-AS1 UMPS KALRN ENO1P3 ENSG00000280042
GH03G124882 1.7 FANTOM5 ENCODE dbSUPER 10.6 +105.0 104997 8.0 HNRNPUL1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 FOS ZNF263 ITGB5 ITGB5-AS1 MUC13 GC03M124774 GC03P124890
GH03G124844 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.1 +64.3 64345 1.9 TBP ARID4B RAD21 YY1 SCRT2 ZNF143 FOS IKZF2 THAP11 DEK ITGB5 ITGB5-AS1 HEG1 ENO1P3 ENSG00000280042
GH03G124875 1.6 Ensembl ENCODE dbSUPER 10.8 +97.0 96972 5.3 HDGF PKNOX1 FOXA2 CREB3L1 ARID4B SIN3A YY1 FOS KLF13 JUNB ITGB5 ITGB5-AS1 MUC13 GC03M124774 ENO1P3
GH03G124857 1.4 Ensembl ENCODE dbSUPER 11.3 +78.7 78746 4.6 PKNOX1 ZNF133 SIN3A YY1 TCF12 FOS JUNB REST TBX21 CREB3 ITGB5 ITGB5-AS1 ENO1P3 ENSG00000280042
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ITGB5-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ITGB5-AS1 Gene

Chromosome:
3
Start:
124,781,155 bp from pter
End:
124,787,757 bp from pter
Size:
6,603 bases
Orientation:
Plus strand

Genomic View for ITGB5-AS1 Gene

Genes around ITGB5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ITGB5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ITGB5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ITGB5-AS1 Gene

Proteins for ITGB5-AS1 Gene

Post-translational modifications for ITGB5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ITGB5-AS1 Gene

Domains & Families for ITGB5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ITGB5-AS1 Gene

Function for ITGB5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ITGB5-AS1 Gene

Localization for ITGB5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ITGB5-AS1 Gene

Pathways & Interactions for ITGB5-AS1 Gene

SuperPathways for ITGB5-AS1 Gene

No Data Available

Interacting Proteins for ITGB5-AS1 Gene

Gene Ontology (GO) - Biological Process for ITGB5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ITGB5-AS1 Gene

Drugs & Compounds for ITGB5-AS1 Gene

No Compound Related Data Available

Transcripts for ITGB5-AS1 Gene

mRNA/cDNA for ITGB5-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ITGB5-AS1 Gene

No ASD Table

Relevant External Links for ITGB5-AS1 Gene

GeneLoc Exon Structure for
ITGB5-AS1
ECgene alternative splicing isoforms for
ITGB5-AS1

Expression for ITGB5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ITGB5-AS1 Gene

genes like me logo Genes that share expression patterns with ITGB5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ITGB5-AS1 Gene

Orthologs for ITGB5-AS1 Gene

Evolution for ITGB5-AS1 Gene

ENSEMBL:
Gene Tree for ITGB5-AS1 (if available)
TreeFam:
Gene Tree for ITGB5-AS1 (if available)

No data available for Orthologs for ITGB5-AS1 Gene

Paralogs for ITGB5-AS1 Gene

No data available for Paralogs for ITGB5-AS1 Gene

Variants for ITGB5-AS1 Gene

Relevant External Links for ITGB5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ITGB5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ITGB5-AS1 Gene

Disorders for ITGB5-AS1 Gene

No disorders were found for ITGB5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ITGB5-AS1 Gene

Publications for ITGB5-AS1 Gene

No publications were found for ITGB5-AS1 Gene.

Products for ITGB5-AS1 Gene

Sources for ITGB5-AS1 Gene

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