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Aliases for ITGB2-AS1 Gene

Subcategory (RNA class) for ITGB2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ITGB2-AS1 Gene

  • ITGB2 Antisense RNA 1 2 3 5
  • ITGB2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ITGB2-AS1 Gene

Previous GeneCards Identifiers for ITGB2-AS1 Gene

  • GC21P046343

Summaries for ITGB2-AS1 Gene

GeneCards Summary for ITGB2-AS1 Gene

ITGB2-AS1 (ITGB2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ITGB2-AS1 Gene

Genomics for ITGB2-AS1 Gene

Regulatory Elements for ITGB2-AS1 Gene

Enhancers for ITGB2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21F044916 1.2 FANTOM5 ENCODE 14.2 +3.5 3526 16.7 HDGF PKNOX1 SIN3A FEZF1 ZNF48 ZNF121 GLIS2 ZNF143 ZNF548 FOS ENSG00000273027 ENSG00000184441 ITGB2-AS1 ENSG00000215447 PWP2 TRPM2 LINC01547 PICSAR ITGB2 PTTG1IP
GH21F044938 1.1 ENCODE 10.8 +19.4 19446 3.0 PKNOX1 ARNT CREB3L1 MLX WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ENSG00000215447 ENSG00000273027 ENSG00000184441 ITGB2-AS1 LRRC3 MTND5P1 SSR4P1 LINC01547 FAM207A ENSG00000276529
GH21F044949 0.5 ENCODE 9.8 +29.2 29173 1.2 HDGF ARID4B ZNF48 RAD21 ZNF121 ZNF143 ZNF263 REST ZEB2 GLIS1 ENSG00000273027 SSR4P1 ADARB1 LINC01424 UBE2G2 PTTG1IP ITGB2-AS1 FAM207A ENSG00000276529
GH21F044983 0.8 Ensembl ENCODE 9.2 +62.1 62138 1.7 THRB ZNF48 RAD21 RARA HSF1 FOS EGR2 THAP11 KLF11 NR2F2 ADARB1 SSR4P1 ITGB2-AS1 LINC01547 FAM207A ENSG00000276529 LINC00163
GH21F045003 0.5 Ensembl ENCODE 8 +83.3 83315 1.9 RING1 CTCF HDAC1 MXI1 USF1 TAF1 JUN MAX POLR2A CREM ENSG00000184441 ENSG00000215447 LINC00165 ITGB2-AS1 ITGB2 PICSAR
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ITGB2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ITGB2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001841464 -635 2801 HDGF CTCF PKNOX1 MXI1 MAX EBF1 ZNF48 ZBTB40 POLR2A EGR1

Genomic Location for ITGB2-AS1 Gene

Chromosome:
21
Start:
44,921,035 bp from pter
End:
44,929,680 bp from pter
Size:
8,646 bases
Orientation:
Plus strand

Genomic View for ITGB2-AS1 Gene

Genes around ITGB2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ITGB2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ITGB2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ITGB2-AS1 Gene

Proteins for ITGB2-AS1 Gene

Post-translational modifications for ITGB2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ITGB2-AS1 Gene

Domains & Families for ITGB2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ITGB2-AS1 Gene

Function for ITGB2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ITGB2-AS1 Gene

Localization for ITGB2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ITGB2-AS1 Gene

Pathways & Interactions for ITGB2-AS1 Gene

SuperPathways for ITGB2-AS1 Gene

No Data Available

Interacting Proteins for ITGB2-AS1 Gene

Gene Ontology (GO) - Biological Process for ITGB2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ITGB2-AS1 Gene

Transcripts for ITGB2-AS1 Gene

mRNA/cDNA for ITGB2-AS1 Gene

(10) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ITGB2-AS1 Gene

ITGB2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ITGB2-AS1 Gene

No ASD Table

Relevant External Links for ITGB2-AS1 Gene

GeneLoc Exon Structure for
ITGB2-AS1
ECgene alternative splicing isoforms for
ITGB2-AS1

Expression for ITGB2-AS1 Gene

mRNA expression in normal human tissues for ITGB2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ITGB2-AS1 Gene

This gene is overexpressed in Whole Blood (x23.8) and Spleen (x7.2).

SOURCE GeneReport for Unigene cluster for ITGB2-AS1 Gene:

Hs.661035
genes like me logo Genes that share expression patterns with ITGB2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ITGB2-AS1 Gene

Orthologs for ITGB2-AS1 Gene

Evolution for ITGB2-AS1 Gene

ENSEMBL:
Gene Tree for ITGB2-AS1 (if available)
TreeFam:
Gene Tree for ITGB2-AS1 (if available)

No data available for Orthologs for ITGB2-AS1 Gene

Paralogs for ITGB2-AS1 Gene

No data available for Paralogs for ITGB2-AS1 Gene

Variants for ITGB2-AS1 Gene

Sequence variations from dbSNP and Humsavar for ITGB2-AS1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs10532717 -- 44,922,677(+) AAAAA(-/A)GGCAA intron-variant, upstream-variant-2KB
rs111374906 -- 44,919,267(+) GCCGC(C/T)GCCCT intron-variant, upstream-variant-2KB
rs111641350 -- 44,928,990(+) CCTGT(C/G)GGCAG nc-transcript-variant, upstream-variant-2KB
rs111883687 -- 44,928,778(+) CCACG(A/T)GAGGA nc-transcript-variant, utr-variant-5-prime
rs111922607 -- 44,919,118(+) GCCCG(C/T)CCGGT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ITGB2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1127077 CNV insertion 17803354
esv2723696 CNV deletion 23290073
esv2723697 CNV deletion 23290073
esv3575398 CNV gain 25503493
esv3647138 CNV loss 21293372
nsv834110 CNV loss 17160897

Relevant External Links for ITGB2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ITGB2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ITGB2-AS1 Gene

Disorders for ITGB2-AS1 Gene

Relevant External Links for ITGB2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ITGB2-AS1

No disorders were found for ITGB2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ITGB2-AS1 Gene

Publications for ITGB2-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ITGB2-AS1 Gene

Sources for ITGB2-AS1 Gene

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