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Aliases for ITGB2-AS1 Gene

Subcategory (RNA class) for ITGB2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ITGB2-AS1 Gene

  • ITGB2 Antisense RNA 1 2 3 5
  • ITGB2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ITGB2-AS1 Gene

Previous GeneCards Identifiers for ITGB2-AS1 Gene

  • GC21P046343

Summaries for ITGB2-AS1 Gene

GeneCards Summary for ITGB2-AS1 Gene

ITGB2-AS1 (ITGB2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ITGB2-AS1 Gene

Genomics for ITGB2-AS1 Gene

Regulatory Elements for ITGB2-AS1 Gene

Enhancers for ITGB2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21G044916 1.6 FANTOM5 ENCODE dbSUPER 14.2 +3.5 3526 16.7 HDGF PKNOX1 AGO1 SIN3A FEZF1 ZBTB7B ZNF143 ZNF207 FOS ZNF548 ENSG00000273027 ENSG00000184441 ITGB2-AS1 ENSG00000215447 PWP2 TRPM2 LINC01547 PICSAR ITGB2 PTTG1IP
GH21G044938 1.4 ENCODE dbSUPER 10.8 +19.4 19446 3.0 MLX CREB3L1 AGO1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC ENSG00000215447 LINC00205 ENSG00000273027 ITGB2-AS1 PWP2 LINC01547 FAM207A ENSG00000276529
GH21G044983 1.4 Ensembl ENCODE dbSUPER 9.3 +62.1 62131 1.6 FOXA2 RAD21 THRB ZNF48 RARA EGR1 HSF1 ZSCAN5C FOS PCBP1 SSR4P1 ADARB1 ITGB2-AS1 LINC01547 FAM207A ENSG00000276529 LINC00163
GH21G044966 1.8 FANTOM5 Ensembl ENCODE dbSUPER 7.1 +47.8 47777 4.6 ATF1 BRCA1 YY1 TCF12 GLIS2 GATA2 ZHX2 ZNF592 PPARGC1A SMARCA4 ENSG00000215447 ENSG00000273027 ITGB2 LINC01547 FAM207A ITGB2-AS1 POFUT2 ENSG00000276529
GH21G044949 1.1 ENCODE dbSUPER 9.8 +29.2 29173 1.2 HDGF RB1 AGO1 ARID4B ZNF48 RAD21 ZNF121 ZNF143 DEK ZNF263 ENSG00000273027 ADARB1 SSR4P1 UBE2G2 LINC01424 PTTG1IP ITGB2-AS1 FAM207A ENSG00000276529
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ITGB2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for ITGB2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000143122 -935 1801 HDGF PKNOX1 ZNF48 ZBTB40 EGR1 RELB ETV6 IKZF2 CREM GATAD2B

Genomic Location for ITGB2-AS1 Gene

Chromosome:
21
Start:
44,921,035 bp from pter
End:
44,929,680 bp from pter
Size:
8,646 bases
Orientation:
Plus strand

Genomic View for ITGB2-AS1 Gene

Genes around ITGB2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ITGB2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ITGB2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ITGB2-AS1 Gene

Proteins for ITGB2-AS1 Gene

Post-translational modifications for ITGB2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ITGB2-AS1 Gene

Domains & Families for ITGB2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ITGB2-AS1 Gene

Function for ITGB2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ITGB2-AS1 Gene

Localization for ITGB2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ITGB2-AS1 Gene

Pathways & Interactions for ITGB2-AS1 Gene

SuperPathways for ITGB2-AS1 Gene

No Data Available

Interacting Proteins for ITGB2-AS1 Gene

Gene Ontology (GO) - Biological Process for ITGB2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ITGB2-AS1 Gene

Drugs & Compounds for ITGB2-AS1 Gene

No Compound Related Data Available

Transcripts for ITGB2-AS1 Gene

mRNA/cDNA for ITGB2-AS1 Gene

(10) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ITGB2-AS1 Gene

ITGB2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ITGB2-AS1 Gene

No ASD Table

Relevant External Links for ITGB2-AS1 Gene

GeneLoc Exon Structure for
ITGB2-AS1
ECgene alternative splicing isoforms for
ITGB2-AS1

Expression for ITGB2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ITGB2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ITGB2-AS1 Gene

This gene is overexpressed in Whole Blood (x23.8) and Spleen (x7.2).

SOURCE GeneReport for Unigene cluster for ITGB2-AS1 Gene:

Hs.661035
genes like me logo Genes that share expression patterns with ITGB2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ITGB2-AS1 Gene

Orthologs for ITGB2-AS1 Gene

Evolution for ITGB2-AS1 Gene

ENSEMBL:
Gene Tree for ITGB2-AS1 (if available)
TreeFam:
Gene Tree for ITGB2-AS1 (if available)

No data available for Orthologs for ITGB2-AS1 Gene

Paralogs for ITGB2-AS1 Gene

No data available for Paralogs for ITGB2-AS1 Gene

Variants for ITGB2-AS1 Gene

Sequence variations from dbSNP and Humsavar for ITGB2-AS1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs371741629 Uncertain significance 44,920,827(+) CTCGG(G/T)GTGCT intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs754249152 Uncertain significance 44,920,921(+) GGCGC(A/G)GGTCG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs886057120 Uncertain significance 44,920,825(-) CACAC(C/T)GAGGG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs886057121 Uncertain significance 44,920,856(-) GCCCA(A/G)CCAGG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs2070947 Benign 44,920,928(-) GACTT(C/T)ACGAC intron-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for ITGB2-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1127077 CNV insertion 17803354
esv2723696 CNV deletion 23290073
esv2723697 CNV deletion 23290073
esv3575398 CNV gain 25503493
esv3647138 CNV loss 21293372
nsv834110 CNV loss 17160897

Relevant External Links for ITGB2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ITGB2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ITGB2-AS1 Gene

Disorders for ITGB2-AS1 Gene

Relevant External Links for ITGB2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ITGB2-AS1

No disorders were found for ITGB2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ITGB2-AS1 Gene

Publications for ITGB2-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ITGB2-AS1 Gene

Sources for ITGB2-AS1 Gene

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