ITGB2 Gene
protein-coding GIFtS : 74
GCID: GC21 M046305
integrin, beta 2 (complement component 3 receptor 3 and... (Previous names: integrin, beta 2 (antigen CD18 (p95), lymphocyte function-associated... ) (Previous symbols: CD18, MFI7 )
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Aliasesfor ITGB2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
10 fRNAdb , and/or 11 Nature :405,311-319 and CroW21)About This Section Aliases Integrin, Beta 2 (Complement Component 3 Receptor 3 And 4 Subunit) 1 2 Cell Surface Adhesion Glycoprotein (LFA-1,CR3,P150,959 Beta Subunit Precursor)11 CD181 2 3 5 MF172 MFI71 2 3 Cell Surface Adhesion Glycoprotein LFA-1/CR3/P150,959 Beta Subunit Precursor)2 LFA-11 2 Complement Receptor C3 Beta-Subunit2 MAC-11 2 Integrin Beta Chain, Beta 22 Cell Surface Adhesion Glycoproteins LFA-1/CR3/P150,95 Subunit Beta2 3 Integrin Beta-22 Complement Receptor C3 Subunit Beta2 3 Leukocyte Cell Adhesion Molecule CD182 LAD2 5 Leukocyte-Associated Antigens CD18/11A, CD18/11B, CD18/11C2 LCAMB2 5 CD18 Antigen3 Integrin, Beta 2 (Antigen CD18 (P95), Lymphocyte Function-Associated Antigen 1;Macrophage Antigen 1 (Mac-1) Beta Subunit)1
Export aliases for ITGB2 gene to outside databases Previous GC identifers: GC21M042815 GC21M045162 GC21M045130 GC21M031679
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Summariesfor ITGB2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for ITGB2 : The product of this gene belongs to the integrin beta chain family of proteins. Integrins are integral cell-surface proteins composed of an alpha chain and a beta chain. This gene encodes the integrin beta chain beta 2. A given chain may combine with multiple partners resulting in different integrins. For example, beta 2 combines with the alpha L chain to form the integrin LFA-1, and combines with the alpha M chain to form the integrin Mac-1. Integrins are known to participate in cell adhesion as well as cell-surface mediated signalling. Defects in this gene are the cause of leukocyte adhesion deficiency type I (LAD1). Two transcript variants encoding the same protein have been identified for this gene. (provided by RefSeq, Jul 2008) UniProtKB/Swiss-Prot: ITB2_HUMAN, P05107 Function : Integrin alpha-L/beta-2 is a receptor for ICAM1, ICAM2, ICAM3 and ICAM4. Integrins alpha-M/beta-2 andalpha-X/beta-2 are receptors for the iC3b fragment of the third complement component and for fibrinogen. Integrin alpha-X/beta-2 recognizes the sequence G-P-R in fibrinogen alpha-chain. Integrin alpha-M/beta-2 recognizes P1 and P2 peptides of fibrinogen gamma chain. Integrin alpha-M/beta-2 is also a receptor for factor X. Integrin alpha-D/beta-2 is a receptor for ICAM3 and VCAM1. Triggers neutrophil transmigration during lung injury through PTK2B/PYK2-mediated activation Gene Wiki entry for ITGB2 (CD18)
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Genomic Viewsfor ITGB2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics , Whole Chromsome Sequence According to
Nature (Cited Here with Permission) :405,311-319 and CroW21)About This Section
GC21M046305:
GeneLoc
Nature :405,311-319
Start:
46,305,868 bp from pter
31,815,297 bp from centromere
End:
46,351,904 bp from pter
31,850,215 bp from centromere
Size:
46,037 bases
34,919 bases
Orientation:
minus strand
minus strand
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Proteinsfor ITGB2 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: ITB2_HUMAN, P05107 (See
protein sequence )Recommended Name: Integrin beta-2 precursor Size : 769 amino acids; 84782 Da
Subunit : Heterodimer of an alpha and a beta subunit. Beta-2 associates with either alpha-L, alpha-M, alpha-X oralpha-D. Interacts with FGR (By similarity). Interacts with COPS5 and RANBP9
Subcellular location : Membrane; Single-pass type I membrane protein
Sequence caution : Sequence=BAD96225.1; Type=Erroneous initiation;
6/10 PDB 3D structures from and Proteopedia for ITGB2 (see all 10 ):1JX3 (3D)
  1L3Y (3D)
  1YUK (3D)
  2JF1 (3D)
  2P26 (3D)
  2P28 (3D)
 
Secondary accessions : B3KTS8 D3DSM1 Q16418 Q53HS5 Q9UD72Explore the universe of human proteins at neXtProt for ITGB2: NX_P05107 Post-translational modifications:
Both Ser-745 and Ser-756 become phosphorylated when T-cells are exposed to phorbol esters. Phosphorylation on Thr-758 (but not on Ser-756) allows interaction with 14-3-3 proteins1
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_P05107 ITGB2 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (2 alternative transcripts):
NP_000202.2 NP_001120963.1 ENSEMBL proteins: ENSP00000380950 ENSP00000380955 ENSP00000380952 ENSP00000347279 ENSP00000380948 ENSP00000427732 ENSP00000317697 ENSP00000428503 ENSP00000428979 ENSP00000428413 ENSP00000428125 ENSP00000428434 ENSP00000430901 ENSP00000428870 ENSP00000380944 ENSP00000429683 ENSP00000303242 Reactome Protein details: P05107 Human Recombinant Protein Products: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
ITGB2 for ontologies About GeneDecksing ITGB2 Antibody Products: Assay Products for ITGB2:
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Protein
Domains / Familiesfor ITGB2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
ITGB2 for domains About GeneDecksing 5/8 InterPro domains/families (see all 8 ):
Graphical View of Domain Structure for InterPro Entry P05107 ProtoNet protein and cluster: P05107
3 Blocks protein families : IPB001169 Integrin beta IPB002035 Von Willebrand factor type A domain signature IPB002369 Integrin beta subunit signature UniProtKB/Swiss-Prot: ITB2_HUMAN, P05107 Similarity : Belongs to the integrin beta chain familySimilarity : Contains 1 VWFA domain
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Functionfor ITGB2 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: ITB2_HUMAN, P05107 Function : Integrin alpha-L/beta-2 is a receptor for ICAM1, ICAM2, ICAM3 and ICAM4. Integrins alpha-M/beta-2 andalpha-X/beta-2 are receptors for the iC3b fragment of the third complement component and for fibrinogen. Integrin alpha-X/beta-2 recognizes the sequence G-P-R in fibrinogen alpha-chain. Integrin alpha-M/beta-2 recognizes P1 and P2 peptides of fibrinogen gamma chain. Integrin alpha-M/beta-2 is also a receptor for factor X. Integrin alpha-D/beta-2 is a receptor for ICAM3 and VCAM1. Triggers neutrophil transmigration during lung injury through PTK2B/PYK2-mediated activation
Genatlas biochemistry entry for ITGB2 : integrin,beta 2,cell surface adhesion receptor mediating cell-adhesion to extra cellular matrix or to other cells,through hetero dimerization and connecting to the cytoskeleton and various signaling molecules within cells,expressed in leukocytes,common component of LFA-1,Mac-1 and p150,95 antigens Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ITGB2 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ITGB2 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): ITGB2 (NM_000211 ) Sino Biological Human cDNA Clone for ITGB2 DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ITGB2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ITGB2
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ITGB2
Gene Ontology (GO): 5 molecular function terms (GO ID links to tree view) : About this table
ITGB2 for ontologies About GeneDecksing 1 GenomeRNAi human phenotype for ITGB2 :Animal Models: Mouse knock-outs for ITGB2: Itgb2 tm1Bay Itgb2 tm2Bay 11 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Itgb2) :
ITGB2 for phenotypes About GeneDecksing
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Pathways & Interactionsfor ITGB2 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways  - 5/46 super-pathways (see all 46 ) About this table See pathways by source Super-pathway contained gene-specific pathways 1 Integrin Pathway 2 Rho Family GTPases 3 Apoptotic Pathways in Synovial Fibroblasts 4 Actin Nucleation by ARP-WASP Complex 5 Immune response_Alternative complement pathway
Pathway sources See GeneCards unified pathways Show all pathways 5 EMD Millipore Pathways for ITGB2 5/35 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for ITGB2 (see all 35 )5/6 GeneGo (Thomson Reuters) Pathways for ITGB2 (see all 6 )5/7 BioSystems Pathways for ITGB2 (see all 7 ) 5/10
Reactome Pathways for ITGB2 (see all 10 )5/13
Kegg Pathways (Kegg details for ITGB2) (see all 13 ):
ITGB2 for pathways About GeneDecksing Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for ITGB2 STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)5/142 Interacting proteins for ITGB2 (P05107 2 , 3 ENSP00000303242 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 142 )Interactant Interaction Details GeneCard External ID(s) RANBP9 Q96S59 2 , 3 , ENSP00000011619 4 MINT-50055 MINT-50069 MINT-50052 MINT-50054 I2D:
score=4 STRING: ENSP00000011619 ABL1 P00519 2 , 3 , ENSP00000361423 4 MINT-7226083 MINT-7226063 MINT-7226073 MINT-7226098 I2D:
score=1 STRING: ENSP00000361423 RDX P35241 2 , 3 , ENSP00000342830 4 MINT-4652127 MINT-4652107 I2D:
score=2 STRING: ENSP00000342830 CYTH1 Q15438 2 , 3 , ENSP00000354398 4 MINT-4652150 I2D:
score=5 STRING: ENSP00000354398 VAV1 P15498 2 , 3 , ENSP00000302269 4 MINT-7226634 I2D:
score=1 STRING: ENSP00000302269
About this table Gene Ontology (GO): 5/14 biological process terms (GO ID links to tree view) (see all 14 ): About this table
ITGB2 for ontologies About GeneDecksing
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Drugs & Compoundsfor ITGB2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
ITGB2 for compounds About GeneDecksing Browse Tocris compounds for ITGB2 1 HMDB Compound for ITGB2 About this table 1 DrugBank Compound for ITGB2 About this table 10/114 Novoseek chemical compound relationships for ITGB2 gene (see all 114 ) About this table
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
fmlp
75.1
44
7525325 (5), 16249234 (4), 8100744 (3), 8104223 (2) (see all 23 )
lfa703
70.8
2
15161667 (1)
n-formylmethionyl-leucylphenylalanine
62.9
16
7525325 (5), 9142928 (1), 10625005 (1), 15454120 (1) (see all 7 )
phorbol
59.4
5
1850304 (1), 10779523 (1), 7622590 (1), 16099426 (1) (see all 5 )
slex
58.8
11
8547121 (1), 12580864 (1), 7487990 (1), 8740264 (1) (see all 10 )
dexamethasone 21-isonicotinate
56.2
1
15099507 (1)
fibrinogen
50.3
45
12665127 (4), 10845911 (4), 10510057 (3), 1309032 (2) (see all 22 )
cytochalasin b
48.3
1
8914597 (1)
cuprophan
48
7
8455364 (2), 7503138 (1), 8770974 (1), 11549901 (1)
kininogen
43.3
5
8034694 (1), 16902163 (1), 10845911 (1), 10515875 (1)
Search CenterWatch for drugs/clinical trials and news about ITGB2 / ITB2
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Transcriptsfor ITGB2 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for ITGB2 gene (2 alternative transcripts): NM_000211.3 NM_001127491.1 Unigene Cluster for ITGB2:
Integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) Hs.375957 [show with all ESTs ] Unigene Representative Sequence: NM_000211 18/24 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 24 ): ENST00000475170 ENST00000397852 (uc002zgd.2 ) ENST00000397857 ENST00000397854 ENST00000498666 ENST00000355153 (uc002zgg.2 ) ENST00000397850 (uc002zgf.3 uc011afl.1 uc010gpw.2 )ENST00000523323 ENST00000479202 ENST00000320216 ENST00000521987 ENST00000523663 ENST00000522931 ENST00000517563 ENST00000522688 ENST00000520389 ENST00000524251 ENST00000517819 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ITGB2 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ITGB2 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): ITGB2 (NM_000211 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for ITGB2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ITGB2
Additional cDNA sequence: AK095992.1 AK097864.1 AK128344.1 AK222505.1 AK303488.1 BC005861.2 BC021077.1 L78790.1 M15395.1 Y00057.1
24/28 DOTS entries (see all 28 ): DT.100649228 DT.100649224
DT.95365956 DT.100649223 DT.91754605 DT.100844990 DT.101984355 DT.415667 DT.97805072 DT.95146677 DT.121142911 DT.415668 DT.95363832 DT.99930189 DT.121142914 DT.95183164 DT.100037383 DT.121142820 DT.121142822 DT.121142837 DT.121142870 DT.121142874 DT.121142888 DT.40117396 24/268 AceView cDNA sequences (see all 268 ):
BQ053186 CD514549 BU618015 AW027309 AU159090 BG054693 BU615774 AI133046 BM855207 BQ029613 BU152692 AL552968 AA149070 BX956167 AU279404 CR621205 BX107224 BX461693 AI354476 BQ723767 CA388988 AA603700 BF899362 AA502353 GeneLoc Exon Structure 5/22 Alternative Splicing Database (ASD) splice patterns (SP) for ITGB2 (see all 22 ) About this scheme ExUns: 1a · 1b ^ 2a · 2b · 2c · 2d · 2e · 2f · 2g ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b · 7c ^ 8 ^ 9a · 9b ^ 10a · 10b · 10c · 10d ^ 11 ^ SP1 :                   -   -   -     -   -   -       -   -   -             SP2 :     -   -   -   -   -   -   -   -   -   -     -   -   -       -   -   -             SP3 :                   -   -   -     -   -   -       -   -   -   -           SP4 :                   -   -   -     -   -   -       -   -   -           -   SP5 :                           -   -   -       -   -   -            
ExUns: 12a · 12b · 12c · 12d ^ 13a · 13b · 13c · 13d · 13e ^ 14a · 14b ^ 15 ^ 16 ^ 17a · 17b ^ 18 ^ 19 ^ 20 ^ 21a · 21b ^ 22 ^ 23a · 23b · 23c SP1 :         -                   -           -             SP2 :         -                   -           -             SP3 :         -                   -           -             SP4 : -   -   -   -   -                   -           -             SP5 :         -                   -           -            
ECgene alternative splicing isoforms for ITGB2
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Expression for ITGB2 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section ITGB2 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: GAGACTTGAG
About this image ITGB2 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table Stem Cell Differentiation: 1 LifeMap Cell Name Category Mesenchymal stem cells (Stepwise differentia... )Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See ITGB2 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for ITGB2 SOURCE GeneReport for Unigene cluster: Hs.375957 SABiosciences Expression via Pathway-Focused PCR Arrays including ITGB2 (see all 11 ): Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for ITGB2Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat ITGB2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat ITGB2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat ITGB2 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ITGB2
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Orthologsfor ITGB2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for ITGB2 gene from 6/21 species (see all 21 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
ITGB21
integrin, beta 2 (complement component 3 receptor 3 more
67.55(n) 65.11(a)
 
396181 NM_205251.1 NP_990582.1
lizard (Anolis carolinensis)
Reptilia
ITGB26
--
60(a)
1 ↔ 1
GL343645.1(224805-256392)
African clawed frog (Xenopus laevis)
Amphibia
MGC690352
hypothetical protein MGC69035
72.67(n)
 
BC059319.1
zebrafish (Danio rerio)
Actinopterygii
itgb21
integrin, beta 2 (complement component 3 receptor 3 more
56.03(n) 51.73(a)
 
557797 XM_680920.3 XP_686012.3
fruit fly (Drosophila melanogaster)
Insecta
mys3
central nervous system development calcium-dependent more
39(a) (best of 2)
 
--
worm (Caenorhabditis elegans)
Secernentea
pat-33
beta integrin
38(a)
 
III(3981133-3985933) --
ENSEMBL Gene Tree for ITGB2 (if available)TreeFam Gene Tree for ITGB2 (if available)
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Paralogsfor ITGB2 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for ITGB2 gene ITGB4 2 ITGB1 2 ENSG00000259753 2 ITGB7 2 ITGB3 2 ITGBL1 2 ITGB8 2 ITGB6 2 ITGB5 2 7 SIMAP similar genes for ITGB2 using alignment to 16 protein entries: ITB2_HUMAN (see all proteins ):ITGB7 ITGB5 ITGB3 ITGB1 ITGB6 ITGB8 ITGB4
ITGB2 for paralogs About GeneDecksing
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Genomic Variantsfor ITGB2 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 21 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for ITGB2 (46305868 - 46351904 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 4 variations for ITGB2 3 CNVs : 53434 50786 10604 1 Indel : 26991 Human Gene Mutation Database (HGMD) : ITGB2 Locus Specific Mutation Databases (LSDB): ITGB2 SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing ITGB2
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Disorders
/ Diseasesfor ITGB2 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
ITGB2 for disorders About GeneDecksing OMIM gene information: 600065 OMIM disorders : 116920 UniProtKB/Swiss-Prot: ITB2_HUMAN, P05107
Defects in ITGB2 are the cause of leukocyte adhesion deficiency type 1 (LAD1) [MIM:116920]. LAD1 patients have recurrent bacterial infections and their leukocytes are deficient in a wide range of adhesion-dependent functions 20/145 diseases for ITGB2 (see all 145 ): About MalaCards erythema elevatum diutinum leukocyte adhesion deficiency type 1 leukocyte-adhesion deficiency syndrome b-cell non-hodgkin lymphoma lymph node cancer non-hodgkin lymphoma chronic venous leg ulcers age related macular degeneration neonatal alloimmune thrombocytopenia wegener's granulomatosis mycosis fungoides pyoderma gangrenosum lichen planus plasmodium falciparum malaria pre-eclampsia lepromatous leprosy acute myocardial infarction type 2 diabetes mellitus inflammatory bowel disease myocardial infarction 1 disease from the University of Copenhagen DISEASES database for ITGB2 :Leukocyte adhesion deficiency 10/95 Novoseek disease relationships for ITGB2 gene (see all 95 ) About this table
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
leukocyte adhesion deficiency, type i
74.2
4
17675274 (1), 18216298 (1), 17651379 (1)
leukocyte adhesion deficiency syndrome
68.6
3
7685776 (1), 11753075 (1), 10419878 (1)
inflammation
62.4
42
11857637 (3), 8083366 (1), 8995280 (1), 10223354 (1) (see all 36 )
necrosis
50.6
33
8656013 (2), 8094958 (2), 7689934 (2), 1709380 (1) (see all 29 )
psoriasis
32.7
8
1401271 (2), 18521187 (2), 17596165 (1), 10228626 (1) (see all 6 )
mycosis fungoides
32.2
2
1281618 (1), 7539248 (1)
immunodeficiency
30.5
17
7847878 (1), 8656013 (1), 9990374 (1), 17675274 (1) (see all 14 )
asthma allergic
30.1
1
10391069 (1)
rheumatoid arthritis
30
8
8394794 (1), 7481076 (1), 8853226 (1), 8912515 (1) (see all 7 )
lymphocytic leukemia chronic b-cell
28.1
4
7915162 (2), 7690438 (1), 1586717 (1)
Genatlas disease: ITGB2 bacterial,recurrent,severe life-threatening infections,chronic neutrophilia,and impaired wound healing associated with gingivoperiodontitis and lack of pus formation,leukocyte adhesion deficiency Genetic Association Database (GAD): ITGB2 Human Genome Epidemiology (HuGE) Navigator: ITGB2 (35 documents) Export disorders for ITGB2 gene to outside databases
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Publicationsfor ITGB2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for ITGB2 gene, integrated from 9 sources (see all 1269 ): (articles sorted by number of sources associating them with ITGB2) Utopia : connect your pdf to the dynamic world of online information
A prospective evaluation of the CD14 and CD18 gene polymorphisms and risk of stroke. (PubMed id 11935032) 1 , 4, 9 Zee R.Y....Ridker P.M. (2002) A novel leukocyte adhesion deficiency caused by expressed but nonfunctional beta2 integrins Mac-1 and LFA-1. (PubMed id 9884339) 1 , 2 , 9 Hogg N....Klein N. (1999) Genetic cause of leukocyte adhesion molecule deficiency. Abnormal splicing and a missense mutation in a conserved region of CD18 impair cell surface expression of beta 2 integrins. (PubMed id 1346613) 1 , 2 , 9 Nelson C.... Arnaout M.A. (1992) Molecular basis for a severe case of leukocyte adhesion deficiency. (PubMed id 1352501) 1 , 2 , 9 Corbi A....Sanchez-Madrid F. (1992) A novel point mutation in CD18 causing leukocyte adhe sion deficiency in a Chinese patient. (PubMed id 20529581) 1 , 2 Li L....Chen T.X. (2010) Characterization of 11 new cases of leukocyte adhesio n deficiency type 1 with seven novel mutations in the ITGB2 gene. (PubMed id 20549317) 1 , 2 Parvaneh N....Aghamohammadi A. (2010) Structure of an integrin with an alphaI domain, compl ement receptor type 4. (PubMed id 20033057) 1 , 2 Xie C....Springer T.A. (2010) Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. (PubMed id 16335952) 1 , 2 Liu T.... Smith R.D. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004)
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External Searches for ITGB2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing ITGB2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
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Other Databases showing ITGB2 gene
(According to HUGE )
About This Section --
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Specialized Databases showing ITGB2 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for ITGB2 Pharmacogenomics, SNPs, Pathways ATLAS Chromosomes in Cancer entry for ITGB2 Genetics and Cytogenetics in Oncology and Haematology ITGB2base http://bioinf.uta.fi/ITGB2base/ GeneReviews http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/ITGB2
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About This Section Patent Information for ITGB2 gene: Search GeneIP for patents involving ITGB2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor ITGB2 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
OriGene Antibodies for ITGB2 OriGene shRNA RFP for ITGB2 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for ITGB2 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for ITGB2 OriGene Protein Over-expression Lysate for ITGB2 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for ITGB2 OriGene 3'-UTR Clone for ITGB2 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for ITGB2 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for ITGB2 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for ITGB2 OriGene Custom Protein Services for ITGB2 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat ITGB2 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing ITGB2 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat ITGB2 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat ITGB2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat ITGB2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat ITGB2
Search Tocris compounds for ITGB2
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ITGB2
ThermoFisher Antibody for ITGB2
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat ITGB2
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