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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ITGB2 Gene

protein-coding   GIFtS: 74
GCID: GC21M046305

integrin, beta 2 (complement component 3 receptor 3 and...

(Previous names: integrin, beta 2 (antigen CD18 (p95), lymphocyte function-associated...)
(Previous symbols: CD18, MFI7)
 Explore 145 diseases affiliated with
ITGB2 via our new
 Human Malady Compendium 
Biological research products
for ITGB2
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, and/or 11Nature:405,311-319 and CroW21)
About This Section

Aliases
Integrin, Beta 2 (Complement Component 3 Receptor 3 And 4 Subunit)1 2     Cell Surface Adhesion Glycoprotein (LFA-1,CR3,P150,959 Beta Subunit Precursor)11
CD181 2 3 5     MF172
MFI71 2 3     Cell Surface Adhesion Glycoprotein LFA-1/CR3/P150,959 Beta Subunit Precursor)2
LFA-11 2     Complement Receptor C3 Beta-Subunit2
MAC-11 2     Integrin Beta Chain, Beta 22
Cell Surface Adhesion Glycoproteins LFA-1/CR3/P150,95 Subunit Beta2 3     Integrin Beta-22
Complement Receptor C3 Subunit Beta2 3     Leukocyte Cell Adhesion Molecule CD182
LAD2 5     Leukocyte-Associated Antigens CD18/11A, CD18/11B, CD18/11C2
LCAMB2 5     CD18 Antigen3
Integrin, Beta 2 (Antigen CD18 (P95), Lymphocyte Function-Associated Antigen 1;
Macrophage Antigen 1 (Mac-1) Beta Subunit)1
     

External Ids:    HGNC: 61551   Entrez Gene: 36892   Ensembl: ENSG000001602557   OMIM: 6000655   UniProtKB: P051073   

Export aliases for ITGB2 gene to outside databases

Previous GC identifers: GC21M042815 GC21M045162 GC21M045130 GC21M031679


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for ITGB2:
The product of this gene belongs to the integrin beta chain family of proteins. Integrins are integral cell-surface
proteins composed of an alpha chain and a beta chain. This gene encodes the integrin beta chain beta 2. A given chain
may combine with multiple partners resulting in different integrins. For example, beta 2 combines with the alpha L
chain to form the integrin LFA-1, and combines with the alpha M chain to form the integrin Mac-1. Integrins are known
to participate in cell adhesion as well as cell-surface mediated signalling. Defects in this gene are the cause of
leukocyte adhesion deficiency type I (LAD1). Two transcript variants encoding the same protein have been identified
for this gene. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: ITB2_HUMAN, P05107
Function: Integrin alpha-L/beta-2 is a receptor for ICAM1, ICAM2, ICAM3 and ICAM4. Integrins alpha-M/beta-2 and
alpha-X/beta-2 are receptors for the iC3b fragment of the third complement component and for fibrinogen. Integrin
alpha-X/beta-2 recognizes the sequence G-P-R in fibrinogen alpha-chain. Integrin alpha-M/beta-2 recognizes P1 and P2
peptides of fibrinogen gamma chain. Integrin alpha-M/beta-2 is also a receptor for factor X. Integrin alpha-D/beta-2
is a receptor for ICAM3 and VCAM1. Triggers neutrophil transmigration during lung injury through PTK2B/PYK2-mediated
activation

Gene Wiki entry for ITGB2 (CD18)


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics, Whole Chromsome Sequence According to Nature (Cited Here with Permission):405,311-319 and CroW21)
About This Section
RefSeq DNA sequence:
NC_000021.8  NC_018932.1  NT_011515.12  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ITGB2 gene promoter:
         STAT1   AP-1   p300   ATF-2   c-Jun   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 7): ITGB2 promoter sequence

   Search SABiosciences Chromatin IP Primers for ITGB2

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ITGB2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 21q22.3   Ensembl cytogenetic band:  21q22.3   HGNC cytogenetic band: 21q22.3
Nature(405: 311-319) cytogenetic band:   21q22.3
ITGB2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ITGB2 gene location
GeneLoc information about chromosome 21         GeneLoc Exon Structure

(about GC identifiers)
GC21M046305:   GeneLoc Nature:405,311-319
Start:
46,305,868 bp from pter       31,815,297 bp from centromere
End:
46,351,904 bp from pter 31,850,215 bp from centromere
Size:
46,037 bases 34,919 bases
Orientation:
minus strand minus strand

Whole chromosome sequencing:
cDNA sequence: M15395
genomic clones: BAC-7B7 Q15C24


(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: ITB2_HUMAN, P05107 (See protein sequence)
Recommended Name: Integrin beta-2 precursor  
Size: 769 amino acids; 84782 Da
Subunit: Heterodimer of an alpha and a beta subunit. Beta-2 associates with either alpha-L, alpha-M, alpha-X or
alpha-D. Interacts with FGR (By similarity). Interacts with COPS5 and RANBP9
Subcellular location: Membrane; Single-pass type I membrane protein
Sequence caution: Sequence=BAD96225.1; Type=Erroneous initiation;
6/10 PDB 3D structures from and Proteopedia for ITGB2 (see all 10):
1JX3 (3D)        1L3Y (3D)        1YUK (3D)        2JF1 (3D)        2P26 (3D)        2P28 (3D)    
Secondary accessions: B3KTS8 D3DSM1 Q16418 Q53HS5 Q9UD72

Explore the universe of human proteins at neXtProt for ITGB2: NX_P05107

Post-translational modifications:

  • Both Ser-745 and Ser-756 become phosphorylated when T-cells are exposed to phorbol esters. Phosphorylation on Thr-758
  • (but not on Ser-756) allows interaction with 14-3-3 proteins1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P05107

  • ITGB2 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (2 alternative transcripts): 
    NP_000202.2  NP_001120963.1  

    ENSEMBL proteins: 
     ENSP00000380950   ENSP00000380955   ENSP00000380952   ENSP00000347279   ENSP00000380948  
     ENSP00000427732   ENSP00000317697   ENSP00000428503   ENSP00000428979   ENSP00000428413  
     ENSP00000428125   ENSP00000428434   ENSP00000430901   ENSP00000428870   ENSP00000380944  
     ENSP00000429683   ENSP00000303242  
    Reactome Protein details: P05107
    Human Recombinant Protein Products: 
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    Novus Biologicals ITGB2 Proteins
    Novus Biologicals ITGB2 Lysates
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Browse Proteins at Uscn

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886plasma membrane TAS--
    GO:0008305integrin complex NAS12885943


    ITGB2 for ontologies           About GeneDecksing



    ITGB2 Antibody Products: 
    EMD Millipore Mono- and Polyclonal Antibodies for the study of ITGB2
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    Browse ELISAs and CLIAs at Uscn


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ITGB2 for domains           About GeneDecksing

    5/8 InterPro domains/families (see all 8):
     IPR003659 Plexin-like
     IPR002369 Integrin_bsu_N
     IPR012896 Integrin_bsu_tail
     IPR016201 Plexin-like_fold
     IPR015439 Integrin_bsu-2

    Graphical View of Domain Structure for InterPro Entry P05107

    ProtoNet protein and cluster: P05107

    3 Blocks protein families:
    IPB001169 Integrin beta
    IPB002035 Von Willebrand factor type A domain signature
    IPB002369 Integrin beta subunit signature


    UniProtKB/Swiss-Prot: ITB2_HUMAN, P05107
    Similarity: Belongs to the integrin beta chain family
    Similarity: Contains 1 VWFA domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: ITB2_HUMAN, P05107
    Function: Integrin alpha-L/beta-2 is a receptor for ICAM1, ICAM2, ICAM3 and ICAM4. Integrins alpha-M/beta-2 and
    alpha-X/beta-2 are receptors for the iC3b fragment of the third complement component and for fibrinogen. Integrin
    alpha-X/beta-2 recognizes the sequence G-P-R in fibrinogen alpha-chain. Integrin alpha-M/beta-2 recognizes P1 and P2
    peptides of fibrinogen gamma chain. Integrin alpha-M/beta-2 is also a receptor for factor X. Integrin alpha-D/beta-2
    is a receptor for ICAM3 and VCAM1. Triggers neutrophil transmigration during lung injury through PTK2B/PYK2-mediated
    activation

         Genatlas biochemistry entry for ITGB2:
    integrin,beta 2,cell surface adhesion receptor mediating cell-adhesion to extra cellular matrix or to other
    cells,through hetero dimerization and connecting to the cytoskeleton and various signaling molecules within
    cells,expressed in leukocytes,common component of LFA-1,Mac-1 and p150,95 antigens

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    SwitchGear 3'UTR luciferase reporter plasmidITGB2 3' UTR sequence
    Inhib. RNA
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    Clone
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ITGB2 

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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ITGB2

    Gene Ontology (GO): 5 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001948glycoprotein binding IPI16831868
    GO:0004872receptor activity IEA--
    GO:0005102receptor binding IEA--
    GO:0019901protein kinase binding IPI12885943
    GO:0046872metal ion binding IEA--


    ITGB2 for ontologies           About GeneDecksing


    1 GenomeRNAi human phenotype for ITGB2:
     Decreased Salmonella enterica  

    Animal Models:
         Mouse knock-outs for ITGB2: Itgb2tm1Bay Itgb2tm2Bay
         11 MGI mutant phenotypes (inferred from 4 alleles(MGI details for Itgb2):
     cardiovascular system  cellular  hematopoietic system  homeostasis/metabolism  immune system 
     integument  mortality/aging  normal  pigmentation  skeleton 
     vision/eye 

    ITGB2 for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/46 super-pathways (see all 46About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Integrin Pathway
    Integrin Pathway1.00
    UPA-UPAR Pathway0.51
    FAK1 Signaling0.67
    Transendothelial Migration of Leukocytes0.38
    GnRH Signaling0.56
    2Rho Family GTPases
    Rho Family GTPases1.00
    MAPK Signaling0.51
    ERK Signaling0.61
    ILK Signaling0.45
    Molecular Mechanisms of Cancer0.51
    3Apoptotic Pathways in Synovial Fibroblasts
    PPAR Pathway0.66
    Actin-Based Motility by Rho Family GTPases0.52
    Rac1 Pathway0.58
    Rap1 Pathway0.42
    Glioma Invasiveness0.54
    4Actin Nucleation by ARP-WASP Complex
    Actin Nucleation by ARP-WASP Complex1.00
    RhoA Pathway0.35
    Actin Nucleation and Branching0.66
    CDC42 Pathway0.34
    5Immune response_Alternative complement pathway
    Immune response Alternative complement pathway1.00
    Immune response_Lectin induced complement pathway0.56
    Immune response_Alternative complement pathway1.00
    Immune response Lectin Induced complement pathway0.56

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    5 EMD Millipore Pathways for ITGB2
        Immune response Alternative complement pathway
    Immune response Classic complement pathway
    Immune response Role of integrins in NK cells cytotoxicity
    Immune response Lectin Induced complement pathway
    Cell adhesion Integrin inside-out signaling

    5/35 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for ITGB2 (see all 35)
        RhoA Pathway
    Paxillin Interactions
    Molecular Mechanisms of Cancer
    CDK5 Pathway
    Tec Kinases Signaling

    5/6 GeneGo (Thomson Reuters) Pathways for ITGB2 (see all 6)
        Immune response Alternative complement pathway
    Cell adhesion Integrin inside-out signaling
    Inhibitory action of Lipoxins on neutrophil migration
    Immune response Classical complement pathway
    Immune response Role of integrins in NK cells cytotoxicity

    5/7 BioSystems Pathways for ITGB2 (see all 7
        Integrin-mediated cell adhesion
    Focal Adhesion
    IL-5 Signaling Pathway
    HIF-1-alpha transcription factor network
    amb2 Integrin signaling

    5/10        Reactome Pathways for ITGB2 (see all 10)
        Hemostasis
    Integrin cell surface interactions
    Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell
    Toll Like Receptor 4 (TLR4) Cascade
    Toll-Like Receptors Cascades


    5/13         Kegg Pathways  (Kegg details for ITGB2) (see all 13):
        Phagosome
    Cell adhesion molecules (CAMs)
    Natural killer cell mediated cytotoxicity
    Leukocyte transendothelial migration
    Regulation of actin cytoskeleton


    ITGB2 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for ITGB2

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/142 Interacting proteins for ITGB2 (P051072, 3 ENSP000003032424) via UniProtKB, MINT, STRING, and/or I2D (see all 142)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    RANBP9Q96S592, 3, ENSP000000116194MINT-50055 MINT-50069 MINT-50052 MINT-50054 I2D: score=4 STRING: ENSP00000011619
    ABL1P005192, 3, ENSP000003614234MINT-7226083 MINT-7226063 MINT-7226073 MINT-7226098 I2D: score=1 STRING: ENSP00000361423
    RDXP352412, 3, ENSP000003428304MINT-4652127 MINT-4652107 I2D: score=2 STRING: ENSP00000342830
    CYTH1Q154382, 3, ENSP000003543984MINT-4652150 I2D: score=5 STRING: ENSP00000354398
    VAV1P154982, 3, ENSP000003022694MINT-7226634 I2D: score=1 STRING: ENSP00000302269
    About this table

    Gene Ontology (GO): 5/14 biological process terms (GO ID links to tree view) (see all 14):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006915apoptotic process NAS12885943
    GO:0006954inflammatory response NAS12885943
    GO:0007155cell adhesion TAS1694220
    GO:0007159leukocyte cell-cell adhesion IDA12885943
    GO:0007160cell-matrix adhesion IEA--


    ITGB2 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    ITGB2 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ITGB2

    1 HMDB Compound for ITGB2    About this table
    CompoundSynonyms CAS #PubMed Ids
    Simvastatin(+)-Simvastatin (see all 28)79902-63-9--

    1 DrugBank Compound for ITGB2    About this table
    CompoundSynonyms CAS #TypeActionsPubMed Ids
    SimvastatinSimvastatin [Usan:Ban:Inn] (see all 4)79902-63-9targetother15936988 16828882 15041742 17289088

    10/114 Novoseek chemical compound relationships for ITGB2 gene (see all 114)    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    fmlp 75.1 44 7525325 (5), 16249234 (4), 8100744 (3), 8104223 (2) (see all 23)
    lfa703 70.8 2 15161667 (1)
    n-formylmethionyl-leucylphenylalanine 62.9 16 7525325 (5), 9142928 (1), 10625005 (1), 15454120 (1) (see all 7)
    phorbol 59.4 5 1850304 (1), 10779523 (1), 7622590 (1), 16099426 (1) (see all 5)
    slex 58.8 11 8547121 (1), 12580864 (1), 7487990 (1), 8740264 (1) (see all 10)
    dexamethasone 21-isonicotinate 56.2 1 15099507 (1)
    fibrinogen 50.3 45 12665127 (4), 10845911 (4), 10510057 (3), 1309032 (2) (see all 22)
    cytochalasin b 48.3 1 8914597 (1)
    cuprophan 48 7 8455364 (2), 7503138 (1), 8770974 (1), 11549901 (1)
    kininogen 43.3 5 8034694 (1), 16902163 (1), 10845911 (1), 10515875 (1)

    Search CenterWatch for drugs/clinical trials and news about ITGB2 / ITB2 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ITGB2 gene (2 alternative transcripts): 
    NM_000211.3  NM_001127491.1  

    Unigene Cluster for ITGB2:

    Integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)
    Hs.375957  [show with all ESTs]
    Unigene Representative Sequence: NM_000211
    18/24 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 24):
    ENST00000475170 ENST00000397852(uc002zgd.2) ENST00000397857 ENST00000397854
    ENST00000498666 ENST00000355153(uc002zgg.2) ENST00000397850(uc002zgf.3 uc011afl.1 uc010gpw.2)
    ENST00000523323 ENST00000479202 ENST00000320216 ENST00000521987 ENST00000523663
    ENST00000522931 ENST00000517563 ENST00000522688 ENST00000520389 ENST00000524251
    ENST00000517819

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    Inhib. RNA
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    Additional cDNA sequence: 

    AK095992.1 AK097864.1 AK128344.1 AK222505.1 AK303488.1 BC005861.2 BC021077.1 L78790.1 
    M15395.1 Y00057.1 

    24/28 DOTS entries (see all 28):

    DT.100649228  DT.100649224  DT.95365956  DT.100649223  DT.91754605  DT.100844990  DT.101984355  DT.415667 
    DT.97805072  DT.95146677  DT.121142911  DT.415668  DT.95363832  DT.99930189  DT.121142914  DT.95183164 
    DT.100037383  DT.121142820  DT.121142822  DT.121142837  DT.121142870  DT.121142874  DT.121142888  DT.40117396 

    24/268 AceView cDNA sequences (see all 268):

    BQ053186 CD514549 BU618015 AW027309 AU159090 BG054693 BU615774 AI133046 
    BM855207 BQ029613 BU152692 AL552968 AA149070 BX956167 AU279404 CR621205 
    BX107224 BX461693 AI354476 BQ723767 CA388988 AA603700 BF899362 AA502353 

    GeneLoc Exon Structure

    5/22 Alternative Splicing Database (ASD) splice patterns (SP) for ITGB2 (see all 22)    About this scheme

    ExUns: 1a · 1b ^ 2a · 2b · 2c · 2d · 2e · 2f · 2g ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b · 7c ^ 8 ^ 9a · 9b ^ 10a · 10b · 10c · 10d ^ 11 ^
    SP1:                                                        -     -     -           -     -     -                 -     -     -                                 
    SP2:              -     -     -     -     -     -     -     -     -     -           -     -     -                 -     -     -                                 
    SP3:                                                        -     -     -           -     -     -                 -     -     -     -                           
    SP4:                                                        -     -     -           -     -     -                 -     -     -                             -   
    SP5:                                                                                -     -     -                 -     -     -                                 

    ExUns: 12a · 12b · 12c · 12d ^ 13a · 13b · 13c · 13d · 13e ^ 14a · 14b ^ 15 ^ 16 ^ 17a · 17b ^ 18 ^ 19 ^ 20 ^ 21a · 21b ^ 22 ^ 23a · 23b · 23c
    SP1:                          -                                                     -                             -                                 
    SP2:                          -                                                     -                             -                                 
    SP3:                          -                                                     -                             -                                 
    SP4:  -     -     -     -     -                                                     -                             -                                 
    SP5:                          -                                                     -                             -                                 


    ECgene alternative splicing isoforms for ITGB2

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ITGB2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GAGACTTGAG

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    ITGB2 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    Stem Cell Differentiation: 1 LifeMap Cell 
    NameCategory
    Mesenchymal stem cells (Stepwise differentia...)
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See ITGB2 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ITGB2

    SOURCE GeneReport for Unigene cluster: Hs.375957
        SABiosciences Expression via Pathway-Focused PCR Arrays including ITGB2 (see all 11): 
              Extracellular Matrix & Adhesion Molecules in human mouse rat
              Multiple Sclerosis in human mouse rat
              Cell Junction PathwayFinder in human mouse rat
              Inflammatory Response & Autoimmunity in human mouse rat
              Inflammatory Response & Autoimmunity 384HT in human mouse rat

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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ITGB2

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for ITGB2 gene from 6/21 species (see all 21)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves ITGB21 integrin, beta 2 (complement component 3 receptor 3 more 67.55(n)
    65.11(a)
      396181  NM_205251.1  NP_990582.1 
    lizard
    (Anolis carolinensis)
    Reptilia ITGB26
    --
    60(a)
    1 ↔ 1
    GL343645.1(224805-256392)
    African clawed frog
    (Xenopus laevis)
    Amphibia MGC690352 hypothetical protein MGC69035 72.67(n)    BC059319.1 
    zebrafish
    (Danio rerio)
    Actinopterygii itgb21 integrin, beta 2 (complement component 3 receptor 3 more 56.03(n)
    51.73(a)
      557797  XM_680920.3  XP_686012.3 
    fruit fly
    (Drosophila melanogaster)
    Insecta mys3 central nervous system development
    calcium-dependent more
    39(a)
    (best of 2)
        --
    worm
    (Caenorhabditis elegans)
    Secernentea pat-33 beta integrin 38(a)   III(3981133-3985933)   --


    ENSEMBL Gene Tree for ITGB2 (if available)
    TreeFam Gene Tree for ITGB2 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ITGB2 gene
    ITGB42  ITGB12  ENSG000002597532  ITGB72  ITGB32  ITGBL12  ITGB82  ITGB62  
    ITGB52  
    7 SIMAP similar genes for ITGB2 using alignment to 16 protein entries:     ITB2_HUMAN (see all proteins):
    ITGB7    ITGB5    ITGB3    ITGB1    ITGB6    ITGB8
    ITGB4

    ITGB2 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1164 NCBI SNPs in ITGB2 are shown (see all 1164    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 21 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1378526151,2
    Cpathogenic46323397(-) CCATCA/G/TACCTG 6 N D Y mis10--------
    rs1132215351,2
    C,--46305400(+) ACTGCC/TGGAGG 2 -- ds50010--------
    rs1134219211,2
    C,--46305438(+) GTAGAC/TGGCTG 2 -- ds50011Minor allele frequency- T:0.50NA 2
    rs283739491,2
    C--46305439(+) TAGACA/G/TGCTGG 2 -- ds50011NA 2
    rs1440056421,2
    --46305490(+) GGAGGA/GGAGGT 2 -- ds50010--------
    rs1123955461,2
    C,--46305520(+) GTGTAG/AAGCTG 2 -- ds50012Minor allele frequency- A:0.48WA 120
    rs285688771,2
    C,F,--46305627(+) TCCGCT/CGCAGG 2 -- ds500111Minor allele frequency- C:0.37NA WA CSA EA 372
    rs1838008691,2
    --46305662(+) GTTTAC/TGGAAA 2 -- ds50010--------
    rs1482500321,2
    --46305677(+) CCTAGA/GATTTG 2 -- ds50010--------
    rs1879611391,2
    --46305806(+) CAGGAC/TAGGGC 2 -- ds50010--------

    HapMap Linkage Disequilibrium report for ITGB2 (46305868 - 46351904 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 4 variations for ITGB2
         3 CNVs: 53434 50786 10604
         1 Indel: 26991
    Human Gene Mutation Database (HGMD): ITGB2

    Locus Specific Mutation Databases (LSDB): ITGB2

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ITGB2
    DNA2.0 Custom Variant and Variant Library Synthesis for ITGB2

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    ITGB2 for disorders           About GeneDecksing

    OMIM gene information: 600065   
    OMIM disorders: 116920  
    UniProtKB/Swiss-Prot: ITB2_HUMAN, P05107
  • Defects in ITGB2 are the cause of leukocyte adhesion deficiency type 1 (LAD1) [MIM:116920]. LAD1 patients have
  • recurrent bacterial infections and their leukocytes are deficient in a wide range of adhesion-dependent functions

    20/145 diseases for ITGB2 (see all 145):    About MalaCards
    erythema elevatum diutinum    leukocyte adhesion deficiency type 1    leukocyte-adhesion deficiency syndrome    b-cell non-hodgkin lymphoma
    lymph node cancer    non-hodgkin lymphoma    chronic venous leg ulcers    age related macular degeneration
    neonatal alloimmune thrombocytopenia    wegener's granulomatosis    mycosis fungoides    pyoderma gangrenosum
    lichen planus    plasmodium falciparum malaria    pre-eclampsia    lepromatous leprosy
    acute myocardial infarction    type 2 diabetes mellitus    inflammatory bowel disease    myocardial infarction

    1 disease from the University of Copenhagen DISEASES database for ITGB2:
    Leukocyte adhesion deficiency

    10/95 Novoseek disease relationships for ITGB2 gene (see all 95)    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    leukocyte adhesion deficiency, type i 74.2 4 17675274 (1), 18216298 (1), 17651379 (1)
    leukocyte adhesion deficiency syndrome 68.6 3 7685776 (1), 11753075 (1), 10419878 (1)
    inflammation 62.4 42 11857637 (3), 8083366 (1), 8995280 (1), 10223354 (1) (see all 36)
    necrosis 50.6 33 8656013 (2), 8094958 (2), 7689934 (2), 1709380 (1) (see all 29)
    psoriasis 32.7 8 1401271 (2), 18521187 (2), 17596165 (1), 10228626 (1) (see all 6)
    mycosis fungoides 32.2 2 1281618 (1), 7539248 (1)
    immunodeficiency 30.5 17 7847878 (1), 8656013 (1), 9990374 (1), 17675274 (1) (see all 14)
    asthma allergic 30.1 1 10391069 (1)
    rheumatoid arthritis 30 8 8394794 (1), 7481076 (1), 8853226 (1), 8912515 (1) (see all 7)
    lymphocytic leukemia chronic b-cell 28.1 4 7915162 (2), 7690438 (1), 1586717 (1)

    Genatlas disease: ITGB2
    bacterial,recurrent,severe life-threatening infections,chronic neutrophilia,and impaired wound healing associated with
    gingivoperiodontitis and lack of pus formation,leukocyte adhesion deficiency

    Genetic Association Database (GAD): ITGB2
    Human Genome Epidemiology (HuGE) Navigator: ITGB2 (35 documents)

    Export disorders for ITGB2 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ITGB2 gene, integrated from 9 sources (see all 1269):
    (articles sorted by number of sources associating them with ITGB2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. A prospective evaluation of the CD14 and CD18 gene polymorphisms and risk of stroke. (PubMed id 11935032)1, 4, 9 Zee R.Y....Ridker P.M. (2002)
    2. A novel leukocyte adhesion deficiency caused by expressed but nonfunctional beta2 integrins Mac-1 and LFA-1. (PubMed id 9884339)1, 2, 9 Hogg N....Klein N. (1999)
    3. Genetic cause of leukocyte adhesion molecule deficiency. Abnormal splicing and a missense mutation in a conserved region of CD18 impair cell surface expression of beta 2 integrins. (PubMed id 1346613)1, 2, 9 Nelson C.... Arnaout M.A. (1992)
    4. Molecular basis for a severe case of leukocyte adhesion deficiency. (PubMed id 1352501)1, 2, 9 Corbi A....Sanchez-Madrid F. (1992)
    5. A novel point mutation in CD18 causing leukocyte adhe sion deficiency in a Chinese patient. (PubMed id 20529581)1, 2 Li L....Chen T.X. (2010)
    6. Characterization of 11 new cases of leukocyte adhesio n deficiency type 1 with seven novel mutations in the ITGB2 gene. (PubMed id 20549317)1, 2 Parvaneh N....Aghamohammadi A. (2010)
    7. Structure of an integrin with an alphaI domain, compl ement receptor type 4. (PubMed id 20033057)1, 2 Xie C....Springer T.A. (2010)
    8. Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. (PubMed id 16335952)1, 2 Liu T.... Smith R.D. (2005)
    9. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    10. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 3689 HGNC: 6155 AceView: ITGB2 Ensembl:ENSG00000160255 euGenes: HUgn3689
    ECgene: ITGB2 Kegg: 3689 H-InvDB: ITGB2

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ITGB2 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for ITGB2 Genetics and Cytogenetics in Oncology and Haematology
    ITGB2basehttp://bioinf.uta.fi/ITGB2base/
    GeneReviewshttp://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/ITGB2

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ITGB2 gene:
    Search GeneIP for patents involving ITGB2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
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    About This Section

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