ITGAV Gene
protein-coding GIFtS : 68
GC02P187163
integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51) (Previous name: antigen identified by monoclonal antibody L230 )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbols: VNRA, MSK8 )
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Aliases & Descriptions for ITGAV
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases CD51 1 , 2 DKFZp686A08142 2 MSK8 2 , 3 VNRA 2 , 3 , 5
Descriptions CD51 antigen 3 Vitronectin receptor subunit alpha 3 antigen identified by monoclonal antibody L230 1 , 2 integrin alpha-V 2 integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51) 2
Search outside databases for aliases for ITGAV genePrevious GC identifers: GC02P185662 GC02P186138 GC02P187418 GC02P187657 GC02P187280
Summaries for ITGAV (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for ITGAV : ITAGV encodes integrin alpha chain V. Integrins are heterodimeric integral membrane proteinscomposed of an alpha chain and a beta chain. The I-domain containing integrin alpha V undergoespost-translational cleavage to yield disulfide-linked heavy and light chains, that combine withmultiple integrin beta chains to form different integrins. Among the known associating beta chains(beta chains 1,3,5,6, and 8; 'ITGB1', 'ITGB3', 'ITGB5','ITGB6', and 'ITGB8'), each can interact with extracellular matrix ligands;the alpha V beta 3 integrin, perhaps the most studied of these, is referred to as the Vitronectinreceptor (VNR). In addition to adhesion, many integrins are known to facilitate signaltransduction. Alternative splicing results in multiple transcript variants. [provided by RefSeq] UniProtKB/Swiss-Prot: ITAV_HUMAN, P06756 Function : The alpha-V integrins are receptors for vitronectin, cytotactin, fibronectin, fibrinogen,laminin, matrix metalloproteinase-2, osteopontin, osteomodulin, prothrombin, thrombospondin andvWF. They recognize the sequence R-G-D in a wide array of ligands. In case of HIV-1 infection, theinteraction with extracellular viral Tat protein seems to enhance angiogenesis in Kaposi's sarcomalesions
Gene Wiki entry for ITGAV
Genomic Location for ITGAV
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the ITGAV gene Entrez Gene cytogenetic band: 2q31-q32 Ensembl cytogenetic band: 2q32.1 HGNC cytogenetic band: 2q31-q32 ITGAV Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02P187163:
(about GC identifiers )
Start:
187,163,045 bp from pter
End:
187,253,873 bp from pter
Size:
90,829 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000002.10 NT_005403.16 Proteins for ITGAV
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: ITAV_HUMAN, P06756 (See
protein sequence )Recommended Name: Integrin alpha-V precursor Size : 1048 amino acids; 116038 Da
Subunit : Heterodimer of an alpha and a beta subunit. The alpha subunit is composed of an heavy anda light chain linked by a disulfide bond. Alpha-V associates with either beta-1, beta-3, beta-5,beta-6 or beta-8 subunit. Interacts with HIV-1 Tat. Alpha-V/beta-6 binds to foot-and-mouth diseasevirus (FMDV) VP1 protein and acts as a receptor for this virus (By similarity). Alpha-V/beta-6binds to coxsackievirus A9 and coxsackievirus B1 capsid proteins and acts as a receptor for theseviruses
Subcellular location : Membrane; Single-pass type I membrane protein
PDB structures from and Proteopedia : 1JV2 (3D)
 1L5G (3D)
 1M1X (3D)
 1U8C (3D)
 
Secondary accessions : A0AV67 Q53SK4 Q59EB7 Q6LD15Alternative splicing : 2 isoforms : P06756-1 P06756-2
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_001138471.1 NP_001138472.1 NP_002201.1 ENSEMBL proteins: ENSP00000364042 ENSP00000261023 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for ITGAV: Assays for ITGAV:
Protein
Domains/ Families for ITGAV(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P06756 ProtoNet protein and cluster: P06756
3 Blocks protein families : IPB000413 Integrins alpha chain IPB013513 Integrin alpha chain IPB013517 FG-GAP UniProtKB/Swiss-Prot: ITAV_HUMAN, P06756 Similarity : Belongs to the integrin alpha chain familySimilarity : Contains 7 FG-GAP repeats
Gene Function for ITGAV
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_002210 Applied Biosystems Silencer ® siRNAs for ITGAV Sigma-Aldrich siRNA and siRNA Panels for ITGAV Sigma-Aldrich shRNA Panels and shRNA for ITGAV Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001144999                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001144999                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001144999  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002210 UniProtKB/Swiss-Prot: ITAV_HUMAN, P06756 Function : The alpha-V integrins are receptors for vitronectin, cytotactin, fibronectin, fibrinogen,laminin, matrix metalloproteinase-2, osteopontin, osteomodulin, prothrombin, thrombospondin andvWF. They recognize the sequence R-G-D in a wide array of ligands. In case of HIV-1 infection, theinteraction with extracellular viral Tat protein seems to enhance angiogenesis in Kaposi's sarcomalesions
Genatlas biochemistry entry for ITGAV :integrin,alpha V,cell surface adhesion receptor mediating cell-adhesion to extra cellular matrix orto other cells,through hetero dimerization and connecting to the cytoskeleton and varioussignaling molecules within cells,dimerizing with ITGB3 in vitronectin,fibrinogen,von Willebrandfactor,thrombospondin,fibronectin,osteopontin,collagen receptors;with ITGB1 or ITGB5 invitronectin receptor;with ITGB6 in fibronectin receptor
15 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Itgav) :3 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for ITGAV
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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3 Sigma-Aldrich "Your Favorite Gene" Pathways for ITGAV (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for ITGAV 5/171 Interacting proteins for ITGAV (ENSP00000364042 3 P06756 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 171
)About this table 5/10 Gene Ontology (GO) biological process terms (links to tree view) (see all 10
):
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Drugs & Compounds for ITGAV (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Sigma-Aldrich Small Molecules for ITGAV:Antagonist
Browse Tocris compounds for ITGAV 7 Novoseek chemical compound relationships for ITGAV gene
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Transcripts for ITGAV(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_002210 Sigma-Aldrich siRNA and siRNA Panels for ITGAV Sigma-Aldrich shRNA Panels and shRNA for ITGAV Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_002210
REFSEQ mRNAs for ITGAV gene (3 alternative transcripts): NM_001144999.1 NM_001145000.1 NM_002210.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002210
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001144999                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001144999                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001144999  
Additional cDNA sequence: AB209894.1 AK302550.1 AK302990.1 AK309711.1 BC047454.1 BC072686.1 BC126231.1 BC136442.1 BC144100.1 EF560727.1 M14648.1
11 DOTS entries : DT.99956906 DT.91755266 DT.100795812 DT.91755262 DT.100795820 DT.75107177 DT.120969933 DT.120970004 DT.91850420 DT.120969966 DT.95191020
24/305 AceView cDNA sequences (see all 305
):CB128487 AU118713 AW778727 AA709042 BX481015 R38032 BQ025424 M14648 AI362557 AW272306 CA396552 BM728668 BQ129340 AA044639 AA307350 AA320843 T29242 BC072686 AW341935 CB044028 CB138635 AA214606 BU742606 BQ024759
highest scoring ESTs for ITGAV :M14648 AA029934 AA030046 AA044639 AA044703 AA095243 AA098978 AA214606 AA307350 AA313002
Unigene Cluster for ITGAV: Integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51) Hs.436873 [show with all ESTs ] Unigene Representative Sequence: NM_002210 GeneLoc Exon Structure 2 Alternative Splicing Database (ASD) splice patterns (SP) for ITGAV ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22 ^ 23 ^ 24 ^ 25 ^ SP1 :                                                     SP2 :           -   -                                        
ExUns: 26 ^ 27 ^ 28 ^ 29 ^ 30 SP1 :           SP2 :          
About this scheme ECgene alternative splicing isoforms for ITGAV 2 Ensembl transcripts including schematic representations : ENST00000374907
ENST00000261023
Expression for ITGAV
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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ITGAV expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ITGAV 1 / 2 / 3
5 probe-sets matching ITGAV gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TAACTTGTGASOURCE GeneReport for Unigene cluster: Hs.436873 Expression variation in blood from EXPOLDB for ITGAV
Orthologs for ITGAV
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ITGAV gene from 5/11 species (see all 11
)
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
dog (Canis familiaris)
ITGAV1
--
integrin, alpha V (vitronectin receptor, alpha polypeptide, more
89.7(n) 95.12(a)
488437 XM_845896.1 XP_850989.1
chimpanzee (Pan troglodytes)
ITGAV1
--
integrin, alpha V (vitronectin receptor, alpha polypeptide, more
99.65(n) 99.9(a)
459807 XM_515967.2 XP_515967.2
cow (Bos taurus)
ITGAV1
--
integrin, alpha V (vitronectin receptor, alpha polypeptide, more
91.98(n) 95.51(a)
281875 NM_174367.1 NP_776792.1
rat (Rattus norvegicus)
Itgav1
--
integrin alpha V
84.64(n) 89.68(a)
296456 XM_230950.4 XP_230950.4
mouse (Mus musculus)
Itgav1 , 5
2 (46.00 cM) 5
integrin alpha V1, 5
87.09(n) 1 92.33(a) 1
16410 1 NM_008402.1 1 NP_032428.1 1 AK003416 5 AK036485 5 (see all 22 )
About this table Species with no ortholog for ITGAV ENSEMBL Gene Tree for ITGAV Paralogs for ITGAV (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for ITGAV gene ITGA8 2 ITGA2B 2 ITGA5 2
SNPs/Variants for ITGAV (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for ITGAV (up to first 250kb)
Disorders & Mutations for ITGAV
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 193210 10/27 Novoseek disease relationships for ITGAV gene (see all 27
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
adenovirus infections
41.16
3
7533853 (2), 9930328 (1)
metastasis
32.87
19
18427826 (4), 12629984 (2), 16631833 (1), 18794119 (1) (see all 10 )
tumors
29.14
22
18357713 (3), 9159820 (2), 12901232 (1), 7538977 (1) (see all 16 )
osteosarcoma
22.25
10
18854653 (6), 10429943 (2)
carcinoma lobular
21.70
3
8548120 (2), 7680285 (1)
colon carcinoma
21.61
1
9223381 (1)
cancer
19.99
8
18427826 (2), 18357713 (2), 17786296 (1), 17955485 (1) (see all 5 )
melanoma
16.88
7
1285050 (1), 7538977 (1), 1376331 (1), 8641196 (1) (see all 5 )
breast carcinoma
14.22
2
8548120 (2)
carcinoma
11.99
5
18427826 (2), 12716042 (1), 9159820 (1)
About this table Human Genome Epidemiology Navigator: ITGAV (4 documents)
Medical News for ITGAV (Possibly Related Articles in
Doctor's Guide )
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--
Publications for ITGAV (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/387 PubMed articles for ITGAV gene (see all 387
): Cloning and characterisation of ITGAV, the genomic sequence for human cell adhesion protein (vitronectin) receptor alpha subunit, CD51. (PubMed id 10965141) 1, 3, 4 Sims M.A.... Campbell D.A. (2000) Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621) 3, 4 Hillier L.W....Wilson R.K. (2005) Integrin alpha v beta 6 is an RGD-dependent receptor for coxsackievirus A9. (PubMed id 15194773) 3, 4 Williams C.H....Stanway G. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry. (PubMed id 12754519) 3, 4 Zhang H.... Aebersold R. (2003) Mass spectrometric based mapping of the disulfide bonding patterns of integrin alpha chains. (PubMed id 14596610) 3, 4 Krokhin O.V....Wilkins J.A. (2003) Crystal structure of the extracellular segment of integrin alpha Vbeta3. (PubMed id 11546839) 3, 4 Xiong J.P.... Arnaout M.A. (2001) The Tat protein of human immunodeficiency virus type-1 promotes vascular cell growth and locomotion by engaging the alpha5beta1 and alphavbeta3 integrins and by mobilizing sequestered basic fibroblast growth factor. (PubMed id 10397733) 3, 4 Barillari G.... Ensoli B. (1999) The integrin alpha v gene: identification and characterization of the promoter region. (PubMed id 7522056) 3, 4 Donahue J.P.... Hawiger J. (1994) A novel vitronectin receptor integrin (alpha v beta x) is responsible for distinct adhesive properties of carcinoma cells. (PubMed id 2467745) 3, 4 Cheresh D.A.... Quaranta V. (1989)
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Genome Databases showing ITGAV
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing ITGAV
(According to HUGE )
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--
Specialized Databases showing ITGAV (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for ITGAV (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for ITGAV:
Antibodies & Assays for ITGAV   (integrin alpha5)
Search Tocris compounds for ITGAV
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009