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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ITGA5 Gene

protein-coding   GIFtS: 70
GCID: GC12M054789

integrin, alpha 5 (fibronectin receptor, alpha polypeptide)


(Previous symbol: FNRA)
 Explore 63 diseases affiliated with
ITGA5 via our new
 Human Malady Compendium 
Biological research products
for ITGA5
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Integrin, Alpha 5 (Fibronectin Receptor, Alpha Polypeptide)1 2     CD49 Antigen-Like Family Member E2 3
FNRA1 2 3 5     VLA5A2 5
CD49e1 2     Fibronectin Receptor, Alpha Subunit2
Fibronectin Receptor Subunit Alpha2 3     Integrin Alpha-52
Integrin Alpha-F2 3     Very Late Activation Protein 5, Alpha Subunit2
VLA-52 3     CD49e Antigen3

External Ids:    HGNC: 61411   Entrez Gene: 36782   Ensembl: ENSG000001616387   OMIM: 1356205   UniProtKB: P086483   

Export aliases for ITGA5 gene to outside databases

Previous GC identifers: GC12M054915 GC12M054505 GC12M053075 GC12M051828


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for ITGA5:
The product of this gene belongs to the integrin alpha chain family. Integrins are heterodimeric integral membrane
proteins composed of an alpha chain and a beta chain. This gene encodes the integrin alpha 5 chain. Alpha chain 5
undergoes post-translational cleavage in the extracellular domain to yield disulfide-linked light and heavy chains
that join with beta 1 to form a fibronectin receptor. In addition to adhesion, integrins are known to participate in
cell-surface mediated signalling. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: ITA5_HUMAN, P08648
Function: Integrin alpha-5/beta-1 is a receptor for fibronectin and fibrinogen. It recognizes the sequence R-G-D in its
ligands. In case of HIV-1 infection, the interaction with extracellular viral Tat protein seems to enhance
angiogenesis in Kaposi's sarcoma lesions

summary for ITGA5:
Integrins are ubiquitously expressed adhesion molecules. They are cell-surface receptors that exist as
heterodimers of alpha and beta subunits. At physiological conditions, integrins are highly glycosylated and
contain a Ca2+ or Mg2+ ion, which is essential for ligand binding. Integrin receptors are critical for cell
attachment to the extracellular matrix (ECM) and this is mediated through integrin-fibronectin,
-vitronectin, -collagen and -laminin interactions. Intracellularly, integrins form adhesion complexes with
proteins including talin, vinculin, paxillin and alpha-actinin. They also regulate kinases, such as focal
adhesion kinase and Src family kinases, to mediate attachment to the actin cytoskeleton. Integrins also have
a significant role in cell signaling and can activate protein kinases involved in the regulation of cell
growth, division, survival, differentiation, migration and apoptosis. Glycoprotein II/IIIb (alphaIIbbeta3)
is an integrin receptor found on the surface of platelets. It is involved in the cross-linking of platelets
with fibrin, and so has a vital role in blood clot formation.

Gene Wiki entry for ITGA5


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000012.11  NC_018923.1  NT_029419.12  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ITGA5 gene promoter:
         AP-2alpha isoform 3   AP-1   ATF-2   AP-2alpha isoform 2   PPAR-gamma1   PPAR-gamma2   AP-2alpha isoform 4   c-Jun   AP-2alpha   AP-2alphaA   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidITGA5 promoter sequence
   Search SABiosciences Chromatin IP Primers for ITGA5

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ITGA5


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12q11-q13   Ensembl cytogenetic band:  12q13.13   HGNC cytogenetic band: 12q11-q13

ITGA5 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ITGA5 gene location

GeneLoc information about chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12M054789:  view genomic region     (about GC identifiers)

Start:
54,789,045 bp from pter      End:
54,813,244 bp from pter
Size:
24,200 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: ITA5_HUMAN, P08648 (See protein sequence)
Recommended Name: Integrin alpha-5 precursor  
Size: 1049 amino acids; 114536 Da
Subunit: Heterodimer of an alpha and a beta subunit. The alpha subunit is composed of a heavy and a light chain linked
by a disulfide bond. Alpha-5 associates with beta-1. Interacts with HPS5 and NISCH. Interacts with RAB21 and COMP.
Interacts with HIV-1 Tat
Subcellular location: Membrane; Single-pass type I membrane protein
2 PDB 3D structures from and Proteopedia for ITGA5:
3VI3 (3D)        3VI4 (3D)    
Secondary accessions: Q96HA5

Explore the universe of human proteins at neXtProt for ITGA5: NX_P08648

Post-translational modifications:

  • Proteolytic cleavage by PCSK5 mediates activation of the precursor1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P08648

  • ITGA5 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_002196.2  
    ENSEMBL proteins: 
     ENSP00000293379   ENSP00000450267   ENSP00000405865   ENSP00000447347  
    Reactome Protein details: P08648
    Human Recombinant Protein Products: 
    EMD Millipore Purified and/or Recombinant ITGA5 Protein
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    Novus Biologicals ITGA5 Lysate
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    Browse ProSpec Recombinant Proteins
    Browse Proteins at Uscn

    Gene Ontology (GO): 5/11 cellular component terms (GO ID links to tree view) (see all 11):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001726ruffle TAS11919189
    GO:0005886plasma membrane TAS--
    GO:0005911colocalizes with cell-cell junction IDA14970227
    GO:0005925colocalizes with focal adhesion IDA14970227
    GO:0008305integrin complex IEA--


    ITGA5 for ontologies           About GeneDecksing



    ITGA5 Antibody Products: 
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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ITGA5 for domains           About GeneDecksing

    5 InterPro domains/families:
     IPR000413 Integrin_alpha
     IPR013519 Int_alpha_beta-p
     IPR018184 Integrin_alpha_C_CS
     IPR013517 FG-GAP
     IPR013649 Integrin_alpha-2

    Graphical View of Domain Structure for InterPro Entry P08648

    ProtoNet protein and cluster: P08648

    3 Blocks protein families:
    IPB000413 Integrins alpha chain
    IPB013513 Integrin alpha chain
    IPB013517 FG-GAP


    UniProtKB/Swiss-Prot: ITA5_HUMAN, P08648
    Similarity: Belongs to the integrin alpha chain family
    Similarity: Contains 7 FG-GAP repeats


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: ITA5_HUMAN, P08648
    Function: Integrin alpha-5/beta-1 is a receptor for fibronectin and fibrinogen. It recognizes the sequence R-G-D in its
    ligands. In case of HIV-1 infection, the interaction with extracellular viral Tat protein seems to enhance
    angiogenesis in Kaposi's sarcoma lesions

         Genatlas biochemistry entry for ITGA5:
    integrin,alpha 5 component of VLA-5 receptor,cell surface adhesion receptor mediating cell-adhesion to extra cellular
    matrix or to other cells,through hetero dimerization and connecting to the cytoskeleton and various signaling
    molecules within cells,complexing with ITGB1 in fibronectin receptor

    miRNA
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    miRTarBase miRNAs that target ITGA5:
    hsa-mir-31 (MIRT004976), hsa-mir-92a (MIRT003031)

    OriGene 3'-UTR Clone: ITGA5
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    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat ITGA5
    8/57 QIAGEN miScript miRNA Assays for microRNAs that regulate ITGA5 (see all 57):
    hsa-miR-194* hsa-miR-1321 hsa-miR-328 hsa-miR-330-5p hsa-miR-513a-5p hsa-miR-25 hsa-miR-128 hsa-miR-486-3p
    SwitchGear 3'UTR luciferase reporter plasmidITGA5 3' UTR sequence
    Inhib. RNA
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    Gene Editing
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    Clone
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ITGA5 

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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ITGA5

    Gene Ontology (GO): 5/6 molecular function terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004872receptor activity ----
    GO:0005161platelet-derived growth factor receptor binding TAS19267251
    GO:0005178integrin binding IEA--
    GO:0005515protein binding IPI14970227
    GO:0043184vascular endothelial growth factor receptor 2 binding TAS19267251


    ITGA5 for ontologies           About GeneDecksing


    2 GenomeRNAi human phenotypes for ITGA5:
     Increased cell number in G1, s  Synthetic lethal with Ras 

    Animal Models:
         Mouse knock-outs for ITGA5: Itga5tm2.1Hyn Itga5tm1Hyn
         8 MGI mutant phenotypes (inferred from 3 alleles(MGI details for Itga5):
     behavior/neurological  cardiovascular system  cellular  embryogenesis  growth/size 
     mortality/aging  nervous system  normal 

    ITGA5 for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/44 super-pathways (see all 44About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Cell adhesion_Integrin-mediated cell adhesion and migration
    Cell adhesion_Integrin-mediated cell adhesion and migration1.00
    Cytoskeleton remodeling Fibronectin-binding integrins in cell motility0.32
    Cell adhesion Integrin-mediated cell adhesion and migration1.00
    Cytoskeleton remodeling_Fibronectin-binding integrins in cell motility0.32
    Cytoskeleton remodeling_Integrin outside-in signaling0.37
    Cell adhesion_Endothelial cell contacts by non-junctional mechanisms0.21
    Cytoskeleton remodeling Integrin outside-in signaling0.37
    Cell adhesion Endothelial cell contacts by non-junctional mechanisms0.21
    2Integrin Pathway
    Integrin Pathway1.00
    UPA-UPAR Pathway0.51
    FAK1 Signaling0.67
    Transendothelial Migration of Leukocytes0.38
    GnRH Signaling0.56
    3Apoptotic Pathways in Synovial Fibroblasts
    PPAR Pathway0.66
    Actin-Based Motility by Rho Family GTPases0.52
    Rac1 Pathway0.58
    Rap1 Pathway0.42
    Glioma Invasiveness0.54
    4Axon guidance
    Axon guidance1.00
    L1CAM interactions0.39
    Developmental Biology0.69
    Signal transduction by L10.12
    5Actin Nucleation by ARP-WASP Complex
    Actin Nucleation by ARP-WASP Complex1.00
    RhoA Pathway0.35
    Actin Nucleation and Branching0.66
    CDC42 Pathway0.34

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    5/8 EMD Millipore Pathways for ITGA5 (see all 8)
        Cell adhesion Integrin-mediated cell adhesion and migration
    Cytoskeleton remodeling Integrin outside-in signaling
    Signal transduction PTEN pathway
    Development VEGF-family signaling
    Cytoskeleton remodeling Fibronectin-binding integrins in cell motility

    1 R&D Systems Pathway for ITGA5
        Articular Cartilage Extracellular Matrix

    5/33 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for ITGA5 (see all 33)
        RhoA Pathway
    Paxillin Interactions
    Molecular Mechanisms of Cancer
    CDK5 Pathway
    Tec Kinases Signaling

    2 Cell Signaling Technology (CST) Pathways for ITGA5
        Angiogenesis
    Adhesion

    5/8 GeneGo (Thomson Reuters) Pathways for ITGA5 (see all 8)
        Cell adhesion Integrin inside-out signaling
    Signal transduction PTEN pathway
    Cytoskeleton remodeling Fibronectin-binding integrins in cell motility
    Development VEGF-family signaling
    Cell adhesion Endothelial cell contacts by non-junctional mechanisms

    5/8 BioSystems Pathways for ITGA5 (see all 8
        Integrin-mediated cell adhesion
    Focal Adhesion
    Arrhythmogenic right ventricular cardiomyopathy
    Angiopoietin receptor Tie2-mediated signaling
    Syndecan-2-mediated signaling events

    5/12        Reactome Pathways for ITGA5 (see all 12)
        Hemostasis
    L1CAM interactions
    Developmental Biology
    Integrin cell surface interactions
    FN1 aggregation


    5/11         Kegg Pathways  (Kegg details for ITGA5) (see all 11):
        Phagosome
    Focal adhesion
    ECM-receptor interaction
    Hematopoietic cell lineage
    Regulation of actin cytoskeleton


    ITGA5 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for ITGA5

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/142 Interacting proteins for ITGA5 (P086481, 2, 3 ENSP000002933794) via UniProtKB, MINT, STRING, and/or I2D (see all 142)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    FN1P027512, 3, ENSP000003468394MINT-1781205 I2D: score=5 STRING: ENSP00000346839
    ITGB1P055562, 3, ENSP000003640944MINT-8216012 MINT-8216001 I2D: score=4 STRING: ENSP00000364094
    ENGP178132MINT-8410638 MINT-8415270 MINT-8415254 MINT-8415288
    CTGFP292792, 3, ENSP000003569544MINT-1781238 I2D: score=1 STRING: ENSP00000356954
    SPP1P104513, ENSP000003785174I2D: score=3 STRING: ENSP00000378517
    About this table

    Gene Ontology (GO): 5/17 biological process terms (GO ID links to tree view) (see all 17):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001525angiogenesis TAS19267251
    GO:0007044cell-substrate junction assembly IEA--
    GO:0007155cell adhesion TAS2454952
    GO:0007157heterophilic cell-cell adhesion IEA--
    GO:0007159leukocyte cell-cell adhesion IEA--


    ITGA5 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    ITGA5 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Compounds for ITGA5 available from Tocris Bioscience    About this table
    CompoundAction CAS #
    RGDS peptideIntegrin binding sequence; inhibits integrin receptor function[91037-65-9]
    Echistatin, alpha1 isoform alphaVbeta3 and glycoprotein IIb/IIIa (alphaIIbbeta3) inhibitor[154303-05-6]
    7 Novoseek chemical compound relationships for ITGA5 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    grgdsp 69.6 5 1701798 (1), 8509148 (1), 2365089 (1), 7648723 (1)
    tyrosine 23 3 7561105 (1), 9230816 (1), 10934648 (1)
    procollagen 18.5 2 11721465 (2)
    agarose 0 1 7782460 (1)
    thymidine 0 1 7519154 (1)
    calcium 0 1 14988150 (1)
    vegf 0 2 12844402 (1), 11715447 (1)

    Search CenterWatch for drugs/clinical trials and news about ITGA5 / ITA5 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ITGA5 gene: 
    NM_002205.2  

    Unigene Cluster for ITGA5:

    Integrin, alpha 5 (fibronectin receptor, alpha polypeptide)
    Hs.505654  [show with all ESTs]
    Unigene Representative Sequence: NM_002205
    13 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000552564 ENST00000293379(uc001sga.3 uc010sow.1 uc009znp.1)
    ENST00000547197 ENST00000549601 ENST00000552431 ENST00000552387 ENST00000552583
    ENST00000551564 ENST00000550141 ENST00000551861 ENST00000435631 ENST00000553071
    ENST00000547744

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    hsa-miR-194* hsa-miR-1321 hsa-miR-328 hsa-miR-330-5p hsa-miR-513a-5p hsa-miR-25 hsa-miR-128 hsa-miR-486-3p
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    Inhib. RNA
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    Additional cDNA sequence: 

    AK291570.1 AK304696.1 AK311051.1 AK312414.1 AY429549.1 BC008786.2 M13918.2 X06256.1 

    24/29 DOTS entries (see all 29):

    DT.92444607  DT.450714  DT.95243875  DT.95290467  DT.92444616  DT.121187784  DT.101985272  DT.121187844 
    DT.100717875  DT.100826365  DT.101968049  DT.121187892  DT.121187903  DT.95290161  DT.100008646  DT.121187835 
    DT.95141155  DT.95378585  DT.102833192  DT.121187837  DT.121187876  DT.121187897  DT.40123880  DT.95141150 

    24/464 AceView cDNA sequences (see all 464):

    BQ575931 AU132943 AA729855 AV654005 BQ045330 H41009 CA389046 BM511420 
    AI278366 AI042429 BF916470 BX397849 BU541744 BQ026801 BI517848 CD614214 
    AA418731 BU846469 BU687569 AI500496 BQ300772 AW193228 CA454382 AL549331 

    GeneLoc Exon Structure

    5/10 Alternative Splicing Database (ASD) splice patterns (SP) for ITGA5 (see all 10)    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15a · 15b ^ 16 ^ 17a · 17b · 17c ^ 18 ^ 19a · 19b · 19c ·
    SP1:        -     -                                                           -                                         -     -                                 
    SP2:                                                                                                                    -     -                                 
    SP3:                                                                                                                    -     -                             -   
    SP4:                                                                                                                                                            
    SP5:                                                                                                                                                            

    ExUns: 19d ^ 20 ^ 21a · 21b ^ 22a · 22b ^ 23 ^ 24 ^ 25 ^ 26 ^ 27 ^ 28a · 28b · 28c ^ 29 ^ 30a · 30b ^ 31a · 31b · 31c ^ 32a · 32b · 32c · 32d
    SP1:                                                                    -                       -                       -                           
    SP2:                                                                                            -                       -                           
    SP3:  -     -     -                                                                                                                                 
    SP4:                                                                                            -                                                   
    SP5:                                                                                      -     -                       -                           


    ECgene alternative splicing isoforms for ITGA5

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ITGA5 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: ATGGCAACAG

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    ITGA5 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    10/14 LifeMap In Vivo Development Anatomical Compartments/Cells (see all 14
    Tissue Anatomical Compartment CellCategory (developmental path)
    LimbAutopod Synovial JointCentral Intermediate Lamina CellsCartilage
    LimbStylopod Synovial JointCentral Intermediate Lamina CellsCartilage
    LimbZeugopod Synovial JointCentral Intermediate Lamina CellsCartilage
    CartilageCervical Intervertebral DiscIntervertebral Disc Nucleus Pulposus CellsCartilage
    CartilageLumbar Intervertebral DiscIntervertebral Disc Nucleus Pulposus CellsCartilage
    CartilageSacral Intervertebral DiscIntervertebral Disc Nucleus Pulposus CellsCartilage
    CartilageThoracic Intervertebral DiscIntervertebral Disc Nucleus Pulposus CellsCartilage
    LimbAutopod Synovial JointInterzone CellsCartilage
    LimbStylopod Synovial JointInterzone CellsCartilage
    LimbZeugopod Synovial JointInterzone CellsCartilage
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization
    Stem Cell Differentiation: 3 LifeMap Cells 
    NameCategory
    Mesendoderm-like cells (Generation of mesend...)
    Definitive endoderm-like cells (A scalable, suspensi...)
    Definitive Endoderm (Generation of beta c...)

    See ITGA5 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ITGA5

    SOURCE GeneReport for Unigene cluster: Hs.505654
        SABiosciences Expression via Pathway-Focused PCR Arrays including ITGA5 (see all 8): 
              Extracellular Matrix & Adhesion Molecules in human mouse rat
              Endothelial Cell Biology in human mouse rat
              Atherosclerosis in human mouse rat
              Wound Healing in human mouse rat
              Cell Junction PathwayFinder in human mouse rat

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    In Situ
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ITGA5

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for ITGA5 gene from 5/18 species (see all 18)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    lizard
    (Anolis carolinensis)
    Reptilia --
    --
    --
    72(a)
    54(a)
    1 ↔ many
    1 ↔ many
    GL343250.1(1685961-1736878)
    GL343250.1(1739464-1752370)
    African clawed frog
    (Xenopus laevis)
    Amphibia itga5-A2 integrin alpha5 subunit 76.9(n)    U12683.1 
    zebrafish
    (Danio rerio)
    Actinopterygii 570599862   -- 78(n)    57059986 
    fruit fly
    (Drosophila melanogaster)
    Insecta if3 maintenance of protein localization cell
    adhesion more
    31(a)
    (best of 4)
        --
    worm
    (Caenorhabditis elegans)
    Secernentea F54F2.13 Vitronectin receptor alpha subunit 30(a)
    (best of 2)
      III(8890624-8896700)   --


    ENSEMBL Gene Tree for ITGA5 (if available)
    TreeFam Gene Tree for ITGA5 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ITGA5 gene
    ITGA12  ITGA62  ITGA32  ITGA72  ITGA82  ITGAM2  ITGA112  ITGA22  
    ITGAE2  ITGAD2  ITGA2B2  ITGAV2  ITGAX2  ITGAL2  ITGA92  ITGA42  
    ITGA102  
    5 SIMAP similar genes for ITGA5 using alignment to 4 protein entries:     ITA5_HUMAN (see all proteins):
    ITGAV    ITGA8    ITGA2B    ITGA9    ITGA4

    ITGA5 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    2 NCBI SNPs in ITGA5 are shown     About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 12 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1146302191,2
    --54814893(+) CTTTGG/AGAGGA 1 -- us2k11Minor allele frequency- A:0.01WA 118
    rs1114630081,2
    --54814975(+) TCTAGG/ACAAAC 1 -- us2k11Minor allele frequency- A:0.50CSA 2

    HapMap Linkage Disequilibrium report for ITGA5 (54789045 - 54813244 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for ITGA5: --
    Human Gene Mutation Database (HGMD): ITGA5

    SABiosciences Cancer Mutation PCR Assays
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    DNA2.0 Custom Variant and Variant Library Synthesis for ITGA5

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    ITGA5 for disorders           About GeneDecksing

    OMIM gene information: 135620    OMIM disorders: --

    20/63 diseases for ITGA5 (see all 63):    About MalaCards
    age related macular degeneration    abdominal aortic aneurysm    blood clots    aortic aneurysm
    macular degeneration    lymphoblastic leukemia    alport syndrome    cytomegalovirus infection
    inflammatory bowel disease    transitional cell carcinoma    leiomyomatosis    acute lymphoblastic leukemia
    rheumatoid arthritis    fanconi's anemia    ulcerative colitis    kaposi's sarcoma
    squamous cell carcinoma    adenomyosis    colon carcinoma    multiple myeloma

    1 disease from the University of Copenhagen DISEASES database for ITGA5:
    Myeloma

    10/13 Novoseek disease relationships for ITGA5 gene (see all 13)    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    myeloma 33.3 8 8797890 (2), 7919345 (1), 9575147 (1)
    colon carcinoma 20.7 4 8612688 (2), 9430710 (1), 11169447 (1)
    lymphoblastic leukemia acute 20 3 7768307 (1), 11750103 (1)
    melanoma 19.3 4 7779718 (1), 8006453 (1), 7657531 (1)
    hepatocellular carcinoma 16.1 5 11244970 (2), 9772498 (2), 10888226 (1)
    rheumatoid arthritis 15.9 1 8853226 (1)
    tumors 14.2 13 10794159 (2), 10730274 (1), 8830331 (1), 1386557 (1) (see all 9)
    metastasis 13.4 6 9772498 (2), 18381440 (1), 11244970 (1), 1386557 (1) (see all 5)
    leukemia 7.9 1 8350618 (1)
    metastatic melanoma 5.77 1 1386557 (1)

    Human Genome Epidemiology (HuGE) Navigator: ITGA5 (1 document)

    Export disorders for ITGA5 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ITGA5 gene, integrated from 9 sources (see all 421):
    (articles sorted by number of sources associating them with ITGA5)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Crystal structure of a5b1 integrin ectodomain: atomic details of the fibronectin receptor. (PubMed id 22451694)1, 2 Nagae M....Takagi J. (2012)
    2. Cartilage oligomeric matrix protein/thrombospondin 5 supports chondrocyte attachment through interaction with integrins. (PubMed id 16051604)1, 2 Chen F.H....Lawler J. (2005)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    4. Mass spectrometric based mapping of the disulfide bonding patterns of integrin alpha chains. (PubMed id 14596610)1, 2 Krokhin O.V....Wilkins J.A. (2003)
    5. The Tat protein of human immunodeficiency virus type-1 promotes vascular cell growth and locomotion by engaging the alpha5beta1 and alphavbeta3 integrins and by mobilizing sequestered basic fibroblast growth factor. (PubMed id 10397733)1, 2 Barillari G.... Ensoli B. (1999)
    6. The alpha 5 beta 1 fibronectin receptor. Characterization of the alpha 5 gene promoter. (PubMed id 1834647)1, 2 Birkenmeier T.M.... Dean D.C. (1991)
    7. Chromosomal localization of the genes for the vitronectin and fibronectin receptors alpha subunits and for platelet glycoproteins IIb and IIIa. (PubMed id 2454952)1, 3 Sosnoski D.M....Bennett J.S. (1988)
    8. Comparison of cDNA-derived protein sequences of the human fibronectin and vitronectin receptor alpha-subunits and platelet glycoprotein IIb. (PubMed id 2450560)1, 2 Fitzgerald L.A....Phillips D.R. (1987)
    9. Amino acid sequence of the human fibronectin receptor. (PubMed id 2958481)1, 2 Argraves W.S....Ruoslahti E. (1987)
    10. The very late antigen family of heterodimers is part of a superfamily of molecules involved in adhesion and embryogenesis. (PubMed id 3033641)1, 2 Takada Y.... Hemler M.E. (1987)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 3678 HGNC: 6141 AceView: ITGA5 Ensembl:ENSG00000161638 euGenes: HUgn3678
    ECgene: ITGA5 Kegg: 3678 H-InvDB: ITGA5

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ITGA5 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for ITGA5 Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ITGA5 gene:
    Search GeneIP for patents involving ITGA5

    Licensable Technologies for ITGA5 gene:
    Weizmann Institute:Enrichment of Repopulating Stem Cells For Clinical Protocols
    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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    About This Section

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