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Aliases for ITGA4 Gene

Aliases for ITGA4 Gene

  • Integrin Subunit Alpha 4 2 3 5
  • Alpha 4 Subunit Of VLA-4 Receptor 2 3
  • CD49 Antigen-Like Family Member D 3 4
  • VLA-4 Subunit Alpha 3 4
  • Integrin Alpha-IV 3 4
  • CD49D 3 4
  • Integrin, Alpha 4 (Antigen CD49D, Alpha 4 Subunit Of VLA-4 Receptor) 2
  • Very Late Activation Protein 4 Receptor, Alpha 4 Subunit 3
  • Antigen CD49D, Alpha-4 Subunit Of VLA-4 Receptor 3
  • Integrin Alpha-4 3
  • 269C Wild Type 3
  • Antigen CD49D 2
  • CD49d Antigen 4
  • IA4 3

External Ids for ITGA4 Gene

Previous HGNC Symbols for ITGA4 Gene

  • CD49D

Previous GeneCards Identifiers for ITGA4 Gene

  • GC02P180528
  • GC02P181004
  • GC02P182285
  • GC02P182524
  • GC02P182525
  • GC02P182146
  • GC02P182029
  • GC02P174178

Summaries for ITGA4 Gene

Entrez Gene Summary for ITGA4 Gene

  • The gene encodes a member of the integrin alpha chain family of proteins. Integrins are heterodimeric integral membrane proteins composed of an alpha chain and a beta chain that function in cell surface adhesion and signaling. The encoded preproprotein is proteolytically processed to generate light and heavy chains that comprise the alpha 4 subunit. This subunit associates with a beta 1 or beta 7 subunit to form an integrin that may play a role in cell motility and migration. This integrin is a therapeutic target for the treatment of multiple sclerosis, Crohn's disease and inflammatory bowel disease. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2015]

GeneCards Summary for ITGA4 Gene

ITGA4 (Integrin Subunit Alpha 4) is a Protein Coding gene. Diseases associated with ITGA4 include Progressive Multifocal Leukoencephalopathy and Chronic Venous Insufficiency. Among its related pathways are Arrhythmogenic right ventricular cardiomyopathy (ARVC) and Hematopoietic cell lineage. GO annotations related to this gene include cell adhesion molecule binding and fibronectin binding. An important paralog of this gene is ITGA9.

UniProtKB/Swiss-Prot for ITGA4 Gene

  • Integrins alpha-4/beta-1 (VLA-4) and alpha-4/beta-7 are receptors for fibronectin. They recognize one or more domains within the alternatively spliced CS-1 and CS-5 regions of fibronectin. They are also receptors for VCAM1. Integrin alpha-4/beta-1 recognizes the sequence Q-I-D-S in VCAM1. Integrin alpha-4/beta-7 is also a receptor for MADCAM1. It recognizes the sequence L-D-T in MADCAM1. On activated endothelial cells integrin VLA-4 triggers homotypic aggregation for most VLA-4-positive leukocyte cell lines. It may also participate in cytolytic T-cell interactions with target cells. ITGA4:ITGB1 binds to fractalkine (CX3CL1) and may act as its coreceptor in CX3CR1-dependent fractalkine signaling (PubMed:23125415). ITGA4:ITGB1 binds to PLA2G2A via a site (site 2) which is distinct from the classical ligand-binding site (site 1) and this induces integrin conformational changes and enhanced ligand binding to site 1 (PubMed:18635536, PubMed:25398877).

Tocris Summary for ITGA4 Gene

  • Integrins are ubiquitously expressed adhesion molecules. They are cell-surface receptors that exist as heterodimers of alpha and beta subunits. Under physiological conditions, integrins are highly glycosylated and contain a Ca2+ or Mg2+ ion, which is essential for ligand binding.

Gene Wiki entry for ITGA4 Gene

Additional gene information for ITGA4 Gene

No data available for CIViC summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ITGA4 Gene

Genomics for ITGA4 Gene

Regulatory Elements for ITGA4 Gene

Enhancers for ITGA4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H181303 1.9 FANTOM5 Ensembl ENCODE dbSUPER 20.1 -147.2 -147226 11 PKNOX1 FOXA2 ATF1 MLX SIN3A ARID4B DMAP1 ATF7 RUNX3 SP5 ITGA4 UBE2E3 MIR4437 GC02P181326
GH02H181392 1.5 FANTOM5 Ensembl ENCODE dbSUPER 19.8 -62.4 -62409 3 IRF2 JUN HLF MAX ZNF518A KAT8 ZNF217 MLLT1 PRDM10 ATF7 ITGA4 CERKL ENSG00000226681 GC02P181326
GH02H181139 1.4 FANTOM5 Ensembl ENCODE dbSUPER 16.7 -315.4 -315426 4 STAT1 HLF CEBPB RUNX3 PRDM1 ITGA4 UBE2E3 ENSG00000238171 MIR4437
GH02H181454 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.4 +4.8 4835 13 ZNF2 GLIS2 ZNF143 KLF7 RUNX3 YY2 REST ZNF518A ZNF592 GLIS1 CERKL ITGA4 GC02P181566
GH02H181143 1 FANTOM5 ENCODE dbSUPER 16.8 -311.6 -311556 3 NFYC ZKSCAN1 ITGA4 ENSG00000238171 MIR4437
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ITGA4 on UCSC Golden Path with GeneCards custom track

Promoters for ITGA4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000127233 1708 3601 ZNF2 GLIS2 ZNF143 RUNX3 REST ZNF518A ZNF592 GLIS1 NBN CTCF

Genomic Location for ITGA4 Gene

Chromosome:
2
Start:
181,456,892 bp from pter
End:
181,537,747 bp from pter
Size:
80,856 bases
Orientation:
Plus strand

Genomic View for ITGA4 Gene

Genes around ITGA4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ITGA4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ITGA4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ITGA4 Gene

Proteins for ITGA4 Gene

  • Protein details for ITGA4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P13612-ITA4_HUMAN
    Recommended name:
    Integrin alpha-4
    Protein Accession:
    P13612
    Secondary Accessions:
    • D3DPG4
    • Q7Z4L6

    Protein attributes for ITGA4 Gene

    Size:
    1032 amino acids
    Molecular mass:
    114900 Da
    Quaternary structure:
    • Heterodimer of an alpha and a beta subunit. The alpha subunit can sometimes be cleaved into two non-covalently associated fragments. Alpha-4 associates with either beta-1 or beta-7. Alpha-4 interacts with PXN, LPXN, and TGFB1I1/HIC5. Interacts with CSPG4 through CSPG4 chondroitin sulfate glycosaminoglycan. Interacts with JAML; integrin alpha-4/beta-1 may regulate leukocyte to endothelial cells adhesion by controlling JAML homodimerization. ITGA4:ITGB1 is found in a ternary complex with CX3CR1 and CX3CL1 (PubMed:23125415).
    SequenceCaution:
    • Sequence=AAB59613.1; Type=Frameshift; Positions=13; Evidence={ECO:0000305}; Sequence=CAA34852.1; Type=Frameshift; Positions=13; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for ITGA4 Gene

    Alternative splice isoforms for ITGA4 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ITGA4 Gene

Post-translational modifications for ITGA4 Gene

  • Phosphorylation on Ser-1027 inhibits PXN binding.
  • Ubiquitination at isoforms=295, posLast=116116, posLast=149149, posLast=190190, isoforms=241, posLast=280280, isoforms=289, posLast=363363, posLast=590590, posLast=614614, isoforms=760, posLast=771771, posLast=867867, isoforms=892, and isoforms=1028
  • Glycosylation at isoforms=279, isoforms=2138, isoforms=229, isoforms=480, posLast=518518, isoforms=538, isoforms=626, isoforms=645, posLast=660660, posLast=806806, and isoforms=821
  • Modification sites at PhosphoSitePlus

Other Protein References for ITGA4 Gene

No data available for DME Specific Peptides for ITGA4 Gene

Domains & Families for ITGA4 Gene

Gene Families for ITGA4 Gene

HGNC:
Human Protein Atlas (HPA):
  • Cancer-related genes
  • CD markers
  • FDA approved drug targets
  • Plasma proteins
  • Predicted membrane proteins
  • Predicted secreted proteins

Suggested Antigen Peptide Sequences for ITGA4 Gene

Graphical View of Domain Structure for InterPro Entry

P13612

UniProtKB/Swiss-Prot:

ITA4_HUMAN :
  • The SG1 motif is involved in binding to chondroitin sulfate glycosaminoglycan and cell adhesion.
  • Belongs to the integrin alpha chain family.
Domain:
  • The SG1 motif is involved in binding to chondroitin sulfate glycosaminoglycan and cell adhesion.
Family:
  • Belongs to the integrin alpha chain family.
genes like me logo Genes that share domains with ITGA4: view

Function for ITGA4 Gene

Molecular function for ITGA4 Gene

GENATLAS Biochemistry:
integrin,alpha 4,cell surface adhesion receptor mediating cell-adhesion to extra cellular matrix or to other cells,through hetero dimerization and connecting to the cytoskeleton and various signaling molecules within cells,component of VLA-4 receptor,dimerizing with ITGB1 or ITGB7 in fibronectin,VCAM1 receptors
UniProtKB/Swiss-Prot Function:
Integrins alpha-4/beta-1 (VLA-4) and alpha-4/beta-7 are receptors for fibronectin. They recognize one or more domains within the alternatively spliced CS-1 and CS-5 regions of fibronectin. They are also receptors for VCAM1. Integrin alpha-4/beta-1 recognizes the sequence Q-I-D-S in VCAM1. Integrin alpha-4/beta-7 is also a receptor for MADCAM1. It recognizes the sequence L-D-T in MADCAM1. On activated endothelial cells integrin VLA-4 triggers homotypic aggregation for most VLA-4-positive leukocyte cell lines. It may also participate in cytolytic T-cell interactions with target cells. ITGA4:ITGB1 binds to fractalkine (CX3CL1) and may act as its coreceptor in CX3CR1-dependent fractalkine signaling (PubMed:23125415). ITGA4:ITGB1 binds to PLA2G2A via a site (site 2) which is distinct from the classical ligand-binding site (site 1) and this induces integrin conformational changes and enhanced ligand binding to site 1 (PubMed:18635536, PubMed:25398877).

Phenotypes From GWAS Catalog for ITGA4 Gene

Gene Ontology (GO) - Molecular Function for ITGA4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001968 fibronectin binding IEA --
GO:0003823 antigen binding IEA --
GO:0005515 protein binding IPI 1542691
GO:0015026 coreceptor activity TAS 23125415
GO:0019960 contributes_to C-X3-C chemokine binding IDA 23125415
genes like me logo Genes that share ontologies with ITGA4: view
genes like me logo Genes that share phenotypes with ITGA4: view

Animal Models for ITGA4 Gene

MGI Knock Outs for ITGA4:

Animal Model Products

CRISPR Products

miRNA for ITGA4 Gene

miRTarBase miRNAs that target ITGA4

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for ITGA4
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
  • R&D Systems cDNA Clones for ITGA4 (Integrin alpha 4/CD49d)

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for ITGA4 Gene

Localization for ITGA4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ITGA4 Gene

Membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ITGA4 gene
Compartment Confidence
plasma membrane 5
extracellular 5
peroxisome 2
cytoskeleton 1
cytosol 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Golgi apparatus (2)
  • Vesicles (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for ITGA4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IEA,TAS --
GO:0005925 focal adhesion IDA 21423176
GO:0008305 integrin complex IEA --
GO:0009986 cell surface IDA,IEA 1715889
GO:0016020 membrane IDA,IEA 19946888
genes like me logo Genes that share ontologies with ITGA4: view

Pathways & Interactions for ITGA4 Gene

genes like me logo Genes that share pathways with ITGA4: view

Pathways by source for ITGA4 Gene

SIGNOR curated interactions for ITGA4 Gene

Is activated by:

Gene Ontology (GO) - Biological Process for ITGA4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002687 positive regulation of leukocyte migration IEA --
GO:0003366 cell-matrix adhesion involved in ameboidal cell migration IMP 23986478
GO:0007155 cell adhesion IEA --
GO:0007159 leukocyte cell-cell adhesion IDA 1715889
GO:0007160 cell-matrix adhesion IMP 18308860
genes like me logo Genes that share ontologies with ITGA4: view

Drugs & Compounds for ITGA4 Gene

(38) Drugs for ITGA4 Gene - From: DrugBank, ApexBio, DGIdb, Tocris, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Natalizumab Approved, Investigational Pharma antibody, Target 104
Vedolizumab Approved Pharma Target, antibody 64
Tinzaparin Approved Pharma Target, inhibitor 43
Firategrast Investigational Pharma antagonist α4β1/α4β7 integrin antagonist 0
ATL1102 Investigational Pharma antisense, Target 0

(27) Additional Compounds for ITGA4 Gene - From: Novoseek and Tocris

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
BTT 3033
1259028-99-3

(5) Tocris Compounds for ITGA4 Gene

Compound Action Cas Number
BIO 1211 Selective alpha4beta1 (VLA-4) inhibitor 187735-94-0
BTT 3033 Selective inhibitor of integrin alpha2beta1 1259028-99-3
Cilengitide Potent and selective inhibitor of integrins alphavbeta3 and alphavbeta5 188968-51-6
Obtustatin Potent and selective alpha1beta1 inhibitor
TC-I 15 Potent alpha2beta1 inhibitor; displays antithrombotic activity in vivo 916734-43-5

(5) ApexBio Compounds for ITGA4 Gene

Compound Action Cas Number
BIO 1211 α4β1 inhibitor,selective and high affinity 187735-94-0
BIO 5192 Integrin α4β1 inhibitor 327613-57-0
Firategrast α4β1/α4β7 integrin antagonist 402567-16-2
RGD (Arg-Gly-Asp) Peptides Inhibits integrin binding to RGD motifs 99896-85-2
TR-14035 α4β7 and α4β1 integrins antagonist 232271-19-1
genes like me logo Genes that share compounds with ITGA4: view

Drug Products

Transcripts for ITGA4 Gene

Unigene Clusters for ITGA4 Gene

Integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for ITGA4
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
  • R&D Systems cDNA Clones for ITGA4 (Integrin alpha 4/CD49d)

Alternative Splicing Database (ASD) splice patterns (SP) for ITGA4 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c · 2d ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15a · 15b ^ 16a · 16b ^ 17 ^
SP1: - - - - -
SP2:
SP3: -
SP4: - - -
SP5:
SP6: - - -
SP7:
SP8:

ExUns: 18 ^ 19 ^ 20a · 20b ^ 21 ^ 22 ^ 23 ^ 24 ^ 25 ^ 26 ^ 27 ^ 28 ^ 29a · 29b
SP1: -
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:

Relevant External Links for ITGA4 Gene

GeneLoc Exon Structure for
ITGA4
ECgene alternative splicing isoforms for
ITGA4

Expression for ITGA4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ITGA4 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ITGA4 Gene

This gene is overexpressed in Whole Blood (x5.9).

Protein differential expression in normal tissues from HIPED for ITGA4 Gene

This gene is overexpressed in Lymph node (17.2), CD8 Tcells (13.8), Peripheral blood mononuclear cells (9.3), and Spleen (8.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for ITGA4 Gene



Protein tissue co-expression partners for ITGA4 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ITGA4 Gene:

ITGA4

SOURCE GeneReport for Unigene cluster for ITGA4 Gene:

Hs.440955

Evidence on tissue expression from TISSUES for ITGA4 Gene

  • Liver(4.2)
  • Bone marrow(3)
  • Blood(2.9)
  • Spleen(2.9)
  • Lymph node(2.8)
  • Intestine(2.2)
  • Heart(2.1)
  • Lung(2.1)
genes like me logo Genes that share expression patterns with ITGA4: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ITGA4 Gene

Orthologs for ITGA4 Gene

This gene was present in the common ancestor of animals.

Orthologs for ITGA4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ITGA4 33 34
  • 99.35 (n)
dog
(Canis familiaris)
Mammalia ITGA4 33 34
  • 87.99 (n)
cow
(Bos Taurus)
Mammalia ITGA4 33 34
  • 87.47 (n)
rat
(Rattus norvegicus)
Mammalia Itga4 33
  • 84.5 (n)
mouse
(Mus musculus)
Mammalia Itga4 33 16 34
  • 84.21 (n)
oppossum
(Monodelphis domestica)
Mammalia ITGA4 34
  • 76 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ITGA4 34
  • 70 (a)
OneToOne
chicken
(Gallus gallus)
Aves ITGA4 33 34
  • 69.57 (n)
lizard
(Anolis carolinensis)
Reptilia ITGA4 34
  • 62 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia itga4 33
  • 63.04 (n)
African clawed frog
(Xenopus laevis)
Amphibia LOC397839 33
zebrafish
(Danio rerio)
Actinopterygii itga4 33 34
  • 60.02 (n)
fruit fly
(Drosophila melanogaster)
Insecta scb 35 34
  • 27 (a)
alphaPS5 35 34
  • 26 (a)
alphaPS4 35 34
  • 24 (a)
Species where no ortholog for ITGA4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ITGA4 Gene

ENSEMBL:
Gene Tree for ITGA4 (if available)
TreeFam:
Gene Tree for ITGA4 (if available)

Paralogs for ITGA4 Gene

(8) SIMAP similar genes for ITGA4 Gene using alignment to 6 proteins:

genes like me logo Genes that share paralogs with ITGA4: view

Variants for ITGA4 Gene

Sequence variations from dbSNP and Humsavar for ITGA4 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1047307 Likely benign 181,537,025(+) TCTGA(A/G)ATTTG nc-transcript-variant, utr-variant-3-prime
rs11553356 Likely benign 181,537,230(-) GAGAC(A/C)ATCCT nc-transcript-variant, utr-variant-3-prime
rs12614187 Likely benign 181,537,764(+) GATAT(C/T)TAAAA nc-transcript-variant, utr-variant-3-prime
rs140597682 Likely benign 181,537,489(+) TATTC(-/T)TTTTT nc-transcript-variant, utr-variant-3-prime
rs2368213 Likely benign 181,536,661(+) TGAGA(C/T)GACAG intron-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for ITGA4 Gene

Variant ID Type Subtype PubMed ID
dgv2105n106 CNV deletion 24896259
esv1005604 CNV deletion 20482838
esv1571329 CNV deletion 17803354
esv1979132 CNV deletion 18987734
esv2517753 CNV deletion 19546169
esv2620400 CNV deletion 19546169
esv2721204 CNV deletion 23290073
esv2840458 CNV deletion 24192839
esv3344 CNV loss 18987735
esv3560634 CNV deletion 23714750
esv3893514 CNV gain 25118596
esv6797 CNV loss 19470904
nsv1072054 CNV deletion 25765185
nsv1151355 CNV deletion 26484159
nsv3063 CNV insertion 18451855
nsv819063 CNV loss 19587683
nsv819894 CNV loss 19587683
nsv834476 CNV gain 17160897
nsv954442 CNV duplication 24416366
nsv954708 CNV deletion 24416366

Variation tolerance for ITGA4 Gene

Residual Variation Intolerance Score: 5.69% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.87; 59.01% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ITGA4 Gene

Human Gene Mutation Database (HGMD)
ITGA4
SNPedia medical, phenotypic, and genealogical associations of SNPs for
ITGA4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ITGA4 Gene

Disorders for ITGA4 Gene

MalaCards: The human disease database

(16) MalaCards diseases for ITGA4 Gene - From: HGMD, DISEASES, Novoseek, and GeneCards

- elite association - COSMIC cancer census association via MalaCards
Search ITGA4 in MalaCards View complete list of genes associated with diseases

Relevant External Links for ITGA4

Genetic Association Database (GAD)
ITGA4
Human Genome Epidemiology (HuGE) Navigator
ITGA4
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ITGA4
genes like me logo Genes that share disorders with ITGA4: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ITGA4 Gene

Publications for ITGA4 Gene

  1. Association of the alpha4 integrin subunit gene (ITGA4) with autism. (PMID: 19259978) Correia C … Vicente AM (American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics 2009) 3 22 45 60
  2. ITGA4 polymorphisms and susceptibility to multiple sclerosis. (PMID: 17689671) O'Doherty C … Vandenbroeck K (Journal of neuroimmunology 2007) 3 22 45 60
  3. Proinflammatory secreted phospholipase A2 type IIA (sPLA-IIA) induces integrin activation through direct binding to a newly identified binding site (site 2) in integrins αvβ3, α4β1, and α5β1. (PMID: 25398877) Fujita M … Takada Y (The Journal of biological chemistry 2015) 3 4 60
  4. Integrins αvβ3 and α4β1 act as coreceptors for fractalkine, and the integrin-binding defective mutant of fractalkine is an antagonist of CX3CR1. (PMID: 23125415) Fujita M … Takada Y (Journal of immunology (Baltimore, Md. : 1950) 2012) 3 4 60
  5. Identification of nine novel loci associated with white blood cell subtypes in a Japanese population. (PMID: 21738478) Okada Y … Kamatani N (PLoS genetics 2011) 3 45 60

Products for ITGA4 Gene

Sources for ITGA4 Gene

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