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Aliases & Descriptions for ITGA2
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| BR 2, 5 | | CD49B 2, 3, 5 | | CD49b 1 | | GPIa 2, 3 | | VLA-2 2 | | VLAA2 2 |
| | | Descriptions |
|---|
| CD49 antigen-like family member B 3 | | CD49b antigen 3 | | Collagen receptor 3 | | Platelet membrane glycoprotein Ia 3 | | VLA-2 alpha chain 3 | | integrin alpha 2 2 | integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) 2 | | platelet antigen Br 2 | | platelet glycoprotein GPIa 2 | | platelet glycoprotein Ia 2 | | very late activation protein 2 receptor, alpha-2 subunit 2 |
|
| | Search outside databases for aliases for ITGA2 genePrevious GC identifers: GC05P052449 GC05P053715 GC05P052255 GC05P052301 |
Summaries for ITGA2(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for ITGA2: This gene product belongs to the integrin alpha chain family. Integrins are heterodimeric integral membrane glycoproteins composed of a distinct alpha chain and a common beta chain. They are found on a wide variety of cell types including, T cells, fibroblasts and platelets. Integrins are involved in cell adhesion and also participate in cell-surface mediated signalling. [provided by RefSeq] UniProtKB/Swiss-Prot: ITA2_HUMAN, P17301Function: Integrin alpha-2/beta-1 is a receptor for laminin, collagen, collagen C-propeptides, fibronectin and E-cadherin. It recognizes the proline-hydroxylated sequence G-F-P-G-E-R in collagen. It is responsible for adhesion of platelets and other cells to collagens, modulation of collagen and collagenase gene expression, force generation and organization of newly synthesized extracellular matrixGene Wiki entry for ITGA2 (CD49b) |
Genomic Location for ITGA2
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ITGA2 gene 
Entrez Gene cytogenetic band: 5q23-q31 Ensembl cytogenetic band: 5q11.2 HGNC cytogenetic band: 5q11.2ITGA2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure GeneLoc location for GC05P052321:
(about GC identifiers)
Start:
|
52,320,913 bp from pter |
End:
|
52,426,366 bp from pter |
Size:
|
105,454 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000005.8 NT_006713.14
| Proteins for ITGA2
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: ITA2_HUMAN, P17301 (See
protein sequence)Recommended Name: Integrin alpha-2 precursor Size: 1181 amino acids; 129295 Da
Subunit: Heterodimer of an alpha and a beta subunit. Alpha-2 associates with beta-1. Interacts with HPS5 and RAB21. Binds to human echoviruses 1 and 8 capsid proteins and acts as a receptor for these viruses. Interacts (via ITAG2 I-domain) with rotavirus A VP4; this interaction only occurs in rotavirus integrin-dependent strains, for which ITGA2 acts as a receptor
Subcellular location: Membrane; Single-pass type I membrane protein
PDB structures from and Proteopedia :1AOX (3D)
 1DZI (3D)
 1PQB (3D)
 1V7P (3D)
 
Secondary accessions: Q14595Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_002194.2
ENSEMBL proteins: ENSP00000296585
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
4 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for ITGA2: Assays for ITGA2: | Protein
Domains/ Families for ITGA2(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P17301
ProtoNet protein and cluster: P17301 4 Blocks protein families: IPB000413 Integrins alpha chain IPB002035 Von Willebrand factor type A domain signature IPB013513 Integrin alpha chain IPB013517 FG-GAP
UniProtKB/Swiss-Prot: ITA2_HUMAN, P17301Domain: The integrin I-domain (insert) is a VWFA domain. Integrins with I-domains do not undergo protease cleavageSimilarity: Belongs to the integrin alpha chain familySimilarity: Contains 7 FG-GAP repeatsSimilarity: Contains 1 VWFA domain | Gene Function for ITGA2
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002203
Applied Biosystems Silencer® siRNAs for ITGA2
Sigma-Aldrich siRNA and siRNA Panels for ITGA2  Sigma-Aldrich shRNA Panels and shRNA for ITGA2  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002203                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002203                                  untagged cDNA clone in CMV expression vector: NM_002203 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002203
UniProtKB/Swiss-Prot: ITA2_HUMAN, P17301Function: Integrin alpha-2/beta-1 is a receptor for laminin, collagen, collagen C-propeptides, fibronectin and E-cadherin. It recognizes the proline-hydroxylated sequence G-F-P-G-E-R in collagen. It is responsible for adhesion of platelets and other cells to collagens, modulation of collagen and collagenase gene expression, force generation and organization of newly synthesized extracellular matrixGenatlas biochemistry entry for ITGA2:integrin,alpha 2,cell surface adhesion receptor mediating cell-adhesion to extra cellular matrix or to other cells,through hetero dimerization and connecting to the cytoskeleton and various signaling molecules within cells,component of VLA-2 receptor,dimerizing with ITGB1 in collagen,laminin receptors6 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Itga2):
5 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for ITGA2
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/15 Sigma-Aldrich "Your Favorite Gene" Pathways for ITGA2 (Your Favorite Gene powered by Ingenuity) (see all 15
) 
Gene Network CentralTM Interacting Genes and Proteins Network for ITGA2 
5/134 Interacting proteins for ITGA2 (ENSP000002965853 P173011, 2) via UniProtKB, MINT, and/or STRING (see all 134
)About this table
5 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for ITGA2(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for ITGA2 10/45 Novoseek chemical compound relationships for ITGA2 gene (see all 45
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| bacteriorhodopsin |
96.77 |
1404 |
15842995 (8), 16039842 (7), 8874028 (7), 12058039 (7) (see all 99) |
| bacterioopsin |
83.99 |
31 |
8652531 (3), 2344462 (2), 8580348 (2), 2350173 (1) (see all 8) |
| convulxin |
65.19 |
2 |
12881531 (1) |
| hydrogen |
59.16 |
143 |
15842995 (6), 8349659 (4), 10694399 (4), 15298873 (3) (see all 62) |
| tyrosinate |
54.96 |
6 |
1653012 (2), 2167129 (1), 2060632 (1) |
| beta-ionone |
54.26 |
1 |
8652531 (1) |
| matrigel |
46.64 |
2 |
18554474 (1), 8985098 (1) |
| adp |
43.63 |
13 |
15850609 (1), 14734152 (1), 18253477 (1), 16381175 (1) (see all 9) |
| fibrinogen |
43.21 |
9 |
7503943 (1), 10168553 (1), 10554707 (1), 15665914 (1) (see all 9) |
| grgdsp |
40.86 |
1 |
1331077 (1) |
About this table
|
Transcripts for ITGA2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002203
Sigma-Aldrich siRNA and siRNA Panels for ITGA2  Sigma-Aldrich shRNA Panels and shRNA for ITGA2  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002203 REFSEQ mRNAs for ITGA2 gene: NM_002203.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002203               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002203                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002203                                  untagged cDNA clone in CMV expression vector: NM_002203  Additional cDNA sequence: AK307952.1 BC143505.1 BC143508.1 BC143509.1 BC143511.1 BC143512.1 X17033.1 7 DOTS entries: DT.113328 DT.97818767 DT.40296409 DT.91687975 DT.40126600 DT.97806649 DT.91827777 24/135 AceView cDNA sequences (see all 135
):CA419950 BU632208 BQ001409 BM826223 BM798135 CK904145 BU676023 BU782863 BQ000380 AA307466 AA991803 BG771368 AI309192 CK904146 AI339858 AI538195 AA236162 BQ101227 CB241295 AA532551 BM987549 CK823194 CA442768 BM979113
highest scoring ESTs for ITGA2:X17033 AA069027 AA069096 AA186802 AA236162 AA236687 AA307466 AA311146 AA362330 AA366875 Unigene Cluster for ITGA2: Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) Hs.482077 [show with all ESTs]Unigene Representative Sequence: NM_002203
GeneLoc Exon Structure
2 Alternative Splicing Database (ASD) splice patterns (SP) for ITGA2
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3a | · | 3b | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14 | ^ | 15 | ^ | 16 | ^ | 17 | ^ | 18 | ^ | 19 | ^ | 20 | ^ | 21 | ^ | 22 | ^ | 23 | ^ | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 24 | ^ | 25 | ^ | 26 | ^ | 27 | ^ | 28 | ^ | 29 | ^ | 30 | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for ITGA2
1 Ensembl transcript including schematic representation: ENST00000296585
|
Expression for ITGA2
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ITGA2 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ITGA2
1 / 2 / 3 7 probe-sets matching ITGA2 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TTTGTACAAA
SOURCE GeneReport for Unigene cluster: Hs.482077
|
Orthologs for ITGA2
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ITGA2 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for ITGA2
ENSEMBL Gene Tree for ITGA2 | Paralogs for ITGA2(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for ITGA2 gene
- ITGA12 ITGA112 ITGA102
|
SNPs/Variants for ITGA2(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
| UniProtKB/Swiss-Prot: ITA2_HUMAN, P17301Polymorphism: Position 534 is associated with platelet-specific alloantigen HPA-5 (Br). HPA-5A/Br(a) has Lys-534 and HPA-5B/Br(b) has Glu-534. HPA-5B is involved in neonatal alloimmune thrombocytopenia (NAIT or NATP). The Lys-534-Glu polymorphism may play a role in coronary artery disease (CAD)
HapMap Linkage Disequilibrium images for ITGA2 (up to first 250kb)
|
Disorders & Mutations for ITGA2
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 192974 10/62 Novoseek disease relationships for ITGA2 gene (see all 62
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| collagen fibril |
40.39 |
1 |
16854461 (1) |
| arterial thrombosis |
40.17 |
1 |
9701455 (1) |
| glanzmann thrombasthenia |
37.05 |
1 |
10097812 (1) |
| metastasis |
32.68 |
18 |
7681030 (2), 2011740 (1), 9306710 (1), 14735469 (1) (see all 11) |
| thrombosis |
28.57 |
3 |
17164499 (1), 18045662 (1), 12617110 (1) |
| bernard-soulier syndrome |
27.48 |
1 |
10097812 (1) |
| osteosarcoma |
26.88 |
3 |
8326445 (1), 9716443 (1) |
| rhabdomyosarcoma |
23.32 |
6 |
2011740 (2), 9306710 (1), 8674074 (1), 7630001 (1) |
| colon carcinoma |
20.54 |
4 |
18098323 (1), 11169447 (1), 2304917 (1) |
| gingival overgrowth |
17.35 |
1 |
16304451 (1) |
About this table
Genatlas disease: ITGA2 neonatal alloimmune thrombocytopenia Human Gene Mutation Database: ITGA2 Genetic Association Database: ITGA2 Human Genome Epidemiology Navigator: ITGA2 (93 documents)
|
Medical News for ITGA2(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for ITGA2 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/654 PubMed articles for ITGA2 gene (see all 654
):- Integrin alpha-2 and beta-3 gene polymorphisms and breast cancer risk. (PubMed id 16317580)1, 3, 6 Langsenlehner U....Krippl P. (2006)
- Association of the gene polymorphisms of platelet glycoprotein Ia and IIb/IIIa with myocardial infarction and extent of coronary artery disease in the Korean population. (PubMed id 15227729)1, 3, 6 Park S....Jang Y. (2004)
- Platelet glycoprotein I(b)alpha and integrin alpha2 beta1 polymorphisms: gene frequencies and linkage disequilibrium in a population diversity panel. (PubMed id 15978109)1, 3, 6 Di Paola J....Murray J.C. (2005)
- Glycoprotein Ia 807TT/873AA genotype is not associated with myocardial infarction. (PubMed id 16140647)1, 3, 6 Komurcu E....Erginel-Unaltuna N. (2005)
- Alpha 2 integrin +807 polymorphism in drug-induced gingival overgrowth. (PubMed id 16304451)1, 3, 6 Ogino M....Kataoka M. (2005)
- Diabetes duration may modify the association between genetic variation in the glycoprotein Ia subunit of the platelet collagen receptor and risk of severe diabetic retinopathy: a working hypothesis. (PubMed id 12540964)1, 3, 6 Reiner A.P....Agardh C.D. (2003)
- Association of the GPIa C807T and GPIIIa PlA1/A2 polymorphisms with premature myocardial infarction in men. (PubMed id 11812069)1, 3, 6 Benze G....Junker R. (2002)
- Role of 4 platelet membrane glycoprotein polymorphisms on experimental arterial thrombus formation in men. (PubMed id 11698306)1, 3, 6 Cadroy Y....Sie P. (2001)
- The human platelet alloantigens Br(a) and Brb are associated with a single amino acid polymorphism on glycoprotein Ia (integrin subunit alpha 2). (PubMed id 7901236)1, 3, 4 Santoso S....Newman P.J. (1993)
- Elucidation of N-glycosylation sites on human platelet proteins: a glycoproteomic approach. (PubMed id 16263699)3, 4 Lewandrowski U.... Sickmann A. (2006)
|
Search for ITGA2
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ITGA2
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ITGA2
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ITGA2(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| ATLAS Chromosomes in Cancer entry for ITGA2 | Genetics and Cytogenetics in Oncology and Haematology | | GeneReviews | http://www.genetests.org/query?gene=ITGA2 | | SeattleSNPs | http://pga.gs.washington.edu/data/itga2/ |
|
| | | About This Section
| --
| Services for ITGA2(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for ITGA2:

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Incremental update: 13 Oct 2009
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