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Aliases & Descriptions for ITGA1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CD49a 1, 2 | | VLA-1 3 | | VLA1 1, 2, 5 |
| | | Descriptions |
|---|
| CD49 antigen-like family member A 3 | | CD49a antigen 3 | | Laminin and collagen receptor 2, 3 | | integrin, alpha 1 2 | | very late activation protein 1 2 |
|
| | Search outside databases for aliases for ITGA1 genePrevious GC identifers: GC05P052249 GC05U900017 GC05P052099 |
Summaries for ITGA1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for ITGA1: This gene encodes the alpha 1 subunit of integrin receptors. This protein heterodimerizes with the beta 1 subunit to form a cell-surface receptor for collagen and laminin. The heterodimeric receptor is involved in cell-cell adhesion and may play a role in inflammation and fibrosis. The alpha 1 subunit contains an inserted (I) von Willebrand factor type I domain which is thought to be involved in collagen binding. [provided by RefSeq] UniProtKB/Swiss-Prot: ITA1_HUMAN, P56199Function: Integrin alpha-1/beta-1 is a receptor for laminin and collagen. It recognizes the proline-hydroxylated sequence G-F-P-G-E-R in collagenGene Wiki entry for ITGA1 (CD49a) |
Genomic Location for ITGA1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the ITGA1 gene 
Entrez Gene cytogenetic band: 5q11.2 Ensembl cytogenetic band: 5q11.2 HGNC cytogenetic band: 5q11.1ITGA1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure GeneLoc location for GC05P052119:
(about GC identifiers)
Start:
|
52,119,893 bp from pter |
End:
|
52,285,242 bp from pter |
Size:
|
165,350 bases |
Orientation:
|
plus strand |
| Proteins for ITGA1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: ITA1_HUMAN, P56199 (See
protein sequence)Recommended Name: Integrin alpha-1 precursor Size: 1179 amino acids; 130848 Da
Subunit: Heterodimer of an alpha and a beta subunit. Alpha-1 associates with beta-1. Interacts with RAB21
Subcellular location: Membrane; Single-pass type I membrane protein
PDB structures from and Proteopedia :1PT6 (3D)
 1QC5 (3D)
 1QCY (3D)
 
Secondary accessions: B2RNU0Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_852478.1
ENSEMBL proteins: ENSP00000282588
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
4 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for ITGA1: Assays for ITGA1: | Protein
Domains/ Families for ITGA1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P56199
ProtoNet protein and cluster: P56199 4 Blocks protein families: IPB000413 Integrins alpha chain IPB002035 Von Willebrand factor type A domain signature IPB013513 Integrin alpha chain IPB013517 FG-GAP
UniProtKB/Swiss-Prot: ITA1_HUMAN, P56199Domain: The integrin I-domain (insert) is a VWFA domain. Integrins with I-domains do not undergo protease cleavageSimilarity: Belongs to the integrin alpha chain familySimilarity: Contains 7 FG-GAP repeatsSimilarity: Contains 1 VWFA domain | Gene Function for ITGA1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_181501
Applied Biosystems Silencer® siRNAs for ITGA1
Sigma-Aldrich siRNA and siRNA Panels for ITGA1  Sigma-Aldrich shRNA Panels and shRNA for ITGA1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_181501                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_181501                                  untagged cDNA clones in CMV expression vector (see all 2): NM_181501 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_181501
UniProtKB/Swiss-Prot: ITA1_HUMAN, P56199Function: Integrin alpha-1/beta-1 is a receptor for laminin and collagen. It recognizes the proline-hydroxylated sequence G-F-P-G-E-R in collagenGenatlas biochemistry entry for ITGA1:integrin,alpha 1,cell surface adhesion receptor mediating cell-adhesion to extra cellular matrix or to other cells,through hetero dimerization and connecting to the cytoskeleton and various signaling molecules within cells,dimerizing with ITGB1 in collagen,laminin receptors3 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Itga1):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for ITGA1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/6 Sigma-Aldrich "Your Favorite Gene" Pathways for ITGA1 (Your Favorite Gene powered by Ingenuity) (see all 6
) 
Gene Network CentralTM Interacting Genes and Proteins Network for ITGA1 
5 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for ITGA1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for ITGA1 7 Novoseek chemical compound relationships for ITGA1 gene
About this table
|
Transcripts for ITGA1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_181501
Sigma-Aldrich siRNA and siRNA Panels for ITGA1  Sigma-Aldrich shRNA Panels and shRNA for ITGA1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_181501 REFSEQ mRNAs for ITGA1 gene: NM_181501.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_181501               OriGene GFP tagged cDNA clone in CMV expression vector: NM_181501                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_181501                                  untagged cDNA clones in CMV expression vector (see all 2): NM_181501  24/542 AceView cDNA sequences (see all 542
):AI074570 BM788674 BQ058833 AI383957 R50724 AI378348 AL709969 BG619261 BX400814 AI972404 AA327614 CR604356 BP340360 AI580785 CR613377 AA151209 CR617340 AW172842 BE384077 BM453706 BQ056155 AI333101 CR603721 CR590680
highest scoring ESTs for ITGA1:AL079983 AA043378 AA151209 AA960848 AI580785 AI769211 AI911294 BI836076 H97558 BP422985
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000282588
|
Expression for ITGA1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| ITGA1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for ITGA1
1 / 2 / 3 8 probe-sets matching ITGA1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
Expression variation in blood from EXPOLDB for ITGA1 |
Orthologs for ITGA1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for ITGA1 gene from 5/9 species (see all 9
)
About this table Species with no ortholog for ITGA1
ENSEMBL Gene Tree for ITGA1 | Paralogs for ITGA1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for ITGA1 gene
- ITGA112 ITGA22 ITGA102
|
SNPs/Variants for ITGA1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for ITGA1 (up to first 250kb)
|
Disorders & Mutations for ITGA1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 192968
10/12 Novoseek disease relationships for ITGA1 gene (see all 12
)
About this table
Genetic Association Database: ITGA1 Human Genome Epidemiology Navigator: ITGA1 (7 documents)
|
Medical News for ITGA1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for ITGA1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/189 PubMed articles for ITGA1 gene (see all 189
):- Expression of native and truncated forms of the human integrin alpha 1 subunit. (PubMed id 8428973)2, 3, 4 Briesewitz R.... Marcantonio E.E. (1993)
- Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. (PubMed id 16335952)3, 4 Liu T.... Smith R.D. (2005)
- Jararhagin-derived RKKH peptides induce structural changes in alpha1I domain of human integrin alpha1beta1. (PubMed id 14660600)3, 4 Nymalm Y....Salminen T.A. (2004)
- Platelet GPIaC807T polymorphism is associated with negative outcome of sudden hearing loss. (PubMed id 15109703)3, 6 Rudack C....Junker R. (2004)
- The DNA sequence and comparative analysis of human chromosome 5. (PubMed id 15372022)3, 4 Schmutz J.... Rubin E.M. (2004)
- Antiphospholid antibodies regulate the expression of trophoblast cell adhesion molecules. (PubMed id 11937138)2, 3 Di Simone N....Caruso A. (2002)
- Platelet hyperreactivity after coronary artery bypass grafting: the possible relevance to glycoprotein polymorphisms. A preliminary report. (PubMed id 11454259)3, 6 Golanski J....Watala C. (2001)
- [Study of C807T polymorphism of the platelet collagen receptor alpha2 gene coding sequence in Suzhou Han population] (PubMed id 11877061)3, 6 Shi J....Ruan C. (2001)
- Trench-shaped binding sites promote multiple classes of interactions between collagen and the adherence receptors, alpha(1)beta(1) integrin and Staphylococcus aureus cna MSCRAMM. (PubMed id 10455165)3, 4 Rich R.L.... Hook M. (1999)
- Activation of the FAK-src molecular scaffolds and p130Cas-JNK signaling cascades by alpha1-integrins during colon cancer cell invasion. (PubMed id 17982677)1, 3 Van Slambrouck S....Steelant W.F. (2007)
|
Search for ITGA1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing ITGA1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing ITGA1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing ITGA1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for ITGA1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for ITGA1:

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Incremental update: 13 Oct 2009
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