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Aliases for ITCH-IT1 Gene

Subcategory (RNA class) for ITCH-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ITCH-IT1 Gene

  • ITCH Intronic Transcript 1 2 3 5
  • ITCH Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for ITCH-IT1 Gene

Previous GeneCards Identifiers for ITCH-IT1 Gene

  • GC00U933815
  • GC20P033039

Summaries for ITCH-IT1 Gene

GeneCards Summary for ITCH-IT1 Gene

ITCH-IT1 (ITCH Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ITCH-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ITCH-IT1 Gene

Genomics for ITCH-IT1 Gene

GeneHancer (GH) Regulatory Elements for ITCH-IT1 Gene

Promoters and enhancers for ITCH-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I034450 Enhancer 0.3 ENCODE 550.8 -0.8 -779 0.2 MNT ITCH-IT1 ITCH ITCH-AS1
GH20I034407 Enhancer 1.1 ENCODE dbSUPER 11.8 -42.9 -42899 1 FOXA2 MLX ZFP64 ARID4B DMAP1 ZNF48 YY1 SLC30A9 RXRA SP5 MAP1LC3A TRPC4AP ITCH-AS1 ITCH-IT1 ITCH EDEM2 TP53INP2 CDC42P1
GH20I034414 Enhancer 0.9 ENCODE dbSUPER 13 -35.7 -35697 0.9 PKNOX1 CHD4 BATF KLF5 IRF4 ATF7 ETV6 BCLAF1 IKZF2 SMARCA5 ITCH-AS1 ITCH-IT1 ITCH CDC42P1
GH20I034399 Enhancer 0.9 ENCODE dbSUPER 11.9 -49.9 -49899 3 SOX13 FOXA2 CEBPG RARA YY1 TEAD3 NR2F6 MIXL1 GATAD2A HMG20B CDC42P1 GC20M034402 MAP1LC3A ITCH ITCH-AS1 ITCH-IT1 ENSG00000201498
GH20I034410 Enhancer 0.5 ENCODE dbSUPER 12.9 -40.4 -40400 0.2 MNT ITCH-AS1 ITCH-IT1 ITCH CDC42P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around ITCH-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ITCH-IT1 Gene

Genomic Locations for ITCH-IT1 Gene
chr20:34,450,930-34,454,552
(GRCh38/hg38)
Size:
3,623 bases
Orientation:
Plus strand
chr20:33,038,735-33,042,357
(GRCh37/hg19)

Genomic View for ITCH-IT1 Gene

Genes around ITCH-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ITCH-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ITCH-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for ITCH-IT1 Gene

Proteins for ITCH-IT1 Gene

Post-translational modifications for ITCH-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ITCH-IT1 Gene

Domains & Families for ITCH-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ITCH-IT1 Gene

Function for ITCH-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ITCH-IT1 Gene

Localization for ITCH-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ITCH-IT1 Gene

Pathways & Interactions for ITCH-IT1 Gene

SuperPathways for ITCH-IT1 Gene

No Data Available

Interacting Proteins for ITCH-IT1 Gene

Gene Ontology (GO) - Biological Process for ITCH-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ITCH-IT1 Gene

Drugs & Compounds for ITCH-IT1 Gene

No Compound Related Data Available

Transcripts for ITCH-IT1 Gene

mRNA/cDNA for ITCH-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ITCH-IT1 Gene

No ASD Table

Relevant External Links for ITCH-IT1 Gene

GeneLoc Exon Structure for
ITCH-IT1
ECgene alternative splicing isoforms for
ITCH-IT1

Expression for ITCH-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ITCH-IT1 Gene

genes like me logo Genes that share expression patterns with ITCH-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ITCH-IT1 Gene

Orthologs for ITCH-IT1 Gene

Evolution for ITCH-IT1 Gene

ENSEMBL:
Gene Tree for ITCH-IT1 (if available)
TreeFam:
Gene Tree for ITCH-IT1 (if available)

No data available for Orthologs for ITCH-IT1 Gene

Paralogs for ITCH-IT1 Gene

No data available for Paralogs for ITCH-IT1 Gene

Variants for ITCH-IT1 Gene

Additional Variant Information for ITCH-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ITCH-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ITCH-IT1 Gene

Disorders for ITCH-IT1 Gene

No disorders were found for ITCH-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for ITCH-IT1 Gene

Publications for ITCH-IT1 Gene

  1. cir-ITCH plays an inhibitory role in colorectal cancer by regulating the Wnt/β-catenin pathway. (PMID: 26110611) Huang G … Chen X (PloS one 2015) 3 58
  2. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 58

Products for ITCH-IT1 Gene

Sources for ITCH-IT1 Gene

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