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Aliases for ISYNA1 Gene

Aliases for ISYNA1 Gene

  • Inositol-3-Phosphate Synthase 1 2 3 5
  • Myo-Inositol 1-Phosphate Synthase A1 3 4
  • Myo-Inositol 1-Phosphate Synthase 2 4
  • MI-1-P Synthase 3 4
  • MIP Synthase 3 4
  • EC 5.5.1.4 4 61
  • IPS 1 3 4
  • INO1 3 4
  • Testis Secretory Sperm-Binding Protein Li 200a 3
  • IPS-1 3
  • HINO1 4
  • INOS 3
  • HIPS 4
  • IPS 3

External Ids for ISYNA1 Gene

Previous GeneCards Identifiers for ISYNA1 Gene

  • GC19M019039
  • GC19M018937
  • GC19M018390
  • GC19M018545
  • GC19M018108

Summaries for ISYNA1 Gene

Entrez Gene Summary for ISYNA1 Gene

  • This gene encodes an inositol-3-phosphate synthase enzyme. The encoded protein plays a critical role in the myo-inositol biosynthesis pathway by catalyzing the rate-limiting conversion of glucose 6-phosphate to myoinositol 1-phosphate. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene, and a pseudogene of this gene is located on the short arm of chromosome 4. [provided by RefSeq, Nov 2011]

GeneCards Summary for ISYNA1 Gene

ISYNA1 (Inositol-3-Phosphate Synthase 1) is a Protein Coding gene. Diseases associated with ISYNA1 include Fungal Meningitis and Whipple Disease. Among its related pathways are Inositol phosphate metabolism (REACTOME) and Inositol phosphate metabolism (KEGG). GO annotations related to this gene include inositol-3-phosphate synthase activity.

UniProtKB/Swiss-Prot for ISYNA1 Gene

  • Key enzyme in myo-inositol biosynthesis pathway that catalyzes the conversion of glucose 6-phosphate to 1-myo-inositol 1-phosphate in a NAD-dependent manner. Rate-limiting enzyme in the synthesis of all inositol-containing compounds.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ISYNA1 Gene

Genomics for ISYNA1 Gene

Regulatory Elements for ISYNA1 Gene

Enhancers for ISYNA1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G018414 2.1 FANTOM5 Ensembl ENCODE dbSUPER 2.3 +19.6 19607 9.2 CREB3L1 AGO1 SLC30A9 ZNF143 ZNF548 ZNF263 SP3 TBX21 MEF2D SSRP1 SSBP4 ENSG00000268030 COLGALT1 LRRC25 UPF1 IFI30 IL12RB1 PGPEP1 JUND ARRDC2
GH19G018436 1.6 Ensembl ENCODE dbSUPER 0.7 -1.2 -1202 6.5 HDGF PKNOX1 AGO1 ZFP64 SIN3A FEZF1 ZNF2 ZBTB7B ZNF766 KLF13 ENSG00000268030 UPF1 ENSG00000268938 SSBP4 KXD1 ENSG00000269191 COLGALT1 RFXANK ISYNA1 ENSG00000268199
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ISYNA1 on UCSC Golden Path with GeneCards custom track

Promoters for ISYNA1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000108077 701 1201 HDGF ATF1 AGO1 SIN3A GLI4 ZNF2 ZBTB7B GTF3C2 GLIS2 KLF7

Genomic Location for ISYNA1 Gene

Chromosome:
19
Start:
18,434,388 bp from pter
End:
18,438,301 bp from pter
Size:
3,914 bases
Orientation:
Minus strand

Genomic View for ISYNA1 Gene

Genes around ISYNA1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ISYNA1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ISYNA1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ISYNA1 Gene

Proteins for ISYNA1 Gene

  • Protein details for ISYNA1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NPH2-INO1_HUMAN
    Recommended name:
    Inositol-3-phosphate synthase 1
    Protein Accession:
    Q9NPH2
    Secondary Accessions:
    • B3KRT1
    • G5E9U0
    • Q6NXT5
    • Q7Z525
    • Q9BT65
    • Q9H2Y2
    • Q9NSU0
    • Q9NVW7

    Protein attributes for ISYNA1 Gene

    Size:
    558 amino acids
    Molecular mass:
    61068 Da
    Cofactor:
    Name=NAD(+); Xref=ChEBI:CHEBI:57540;
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAP97151.1; Type=Frameshift; Positions=82, 85, 496; Evidence={ECO:0000305};

    Alternative splice isoforms for ISYNA1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ISYNA1 Gene

Selected DME Specific Peptides for ISYNA1 Gene

Q9NPH2:
  • IKYVPYV
  • LGVMLVG
  • NGSPQNT
  • GLQEQLWPHME
  • GDDFKSGQTK
  • HNTCEDSLLA
  • SPSTLFAVASILE
  • KAPLVPPG
  • YIPEFIAANQ
  • LWTANTER
  • VFDGWDISSLNLA
  • SYNHLGNNDG
  • GGNNGST
  • KSNVVDDM
  • LLTELCQRVSFCTD
  • KSVLVDFL
  • NGCTGDANGH

Post-translational modifications for ISYNA1 Gene

  • Ubiquitination at posLast=155155, isoforms=2, 3222, and posLast=312312
  • Modification sites at PhosphoSitePlus

Domains & Families for ISYNA1 Gene

Suggested Antigen Peptide Sequences for ISYNA1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9NPH2

UniProtKB/Swiss-Prot:

INO1_HUMAN :
  • Belongs to the myo-inositol 1-phosphate synthase family.
Family:
  • Belongs to the myo-inositol 1-phosphate synthase family.
genes like me logo Genes that share domains with ISYNA1: view

No data available for Gene Families for ISYNA1 Gene

Function for ISYNA1 Gene

Molecular function for ISYNA1 Gene

UniProtKB/Swiss-Prot BiophysicochemicalProperties:
Kinetic parameters: KM=0.57 mM for 6-phosphate {ECO:0000269 PubMed:15024000}; KM=8 uM for NAD {ECO:0000269 PubMed:15024000}; pH dependence: Optimum pH is 8.0. {ECO:0000269 PubMed:15024000};
UniProtKB/Swiss-Prot CatalyticActivity:
D-glucose 6-phosphate = 1D-myo-inositol 3-phosphate.
UniProtKB/Swiss-Prot EnzymeRegulation:
Inhibited by mood-stabilizing drugs such as valproate (VPA) and lithium.
UniProtKB/Swiss-Prot Function:
Key enzyme in myo-inositol biosynthesis pathway that catalyzes the conversion of glucose 6-phosphate to 1-myo-inositol 1-phosphate in a NAD-dependent manner. Rate-limiting enzyme in the synthesis of all inositol-containing compounds.
UniProtKB/Swiss-Prot Induction:
By glucose and lovastain. Up-regulation is prevented by mevalonic acid, farnesol, and geranylgeraniol. Up-regulated by E2F1.

Enzyme Numbers (IUBMB) for ISYNA1 Gene

Gene Ontology (GO) - Molecular Function for ISYNA1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004512 inositol-3-phosphate synthase activity TAS --
GO:0005515 protein binding IPI 21044950
GO:0016853 isomerase activity IEA --
genes like me logo Genes that share ontologies with ISYNA1: view
genes like me logo Genes that share phenotypes with ISYNA1: view

Animal Model Products

  • Taconic Biosciences Mouse Models for ISYNA1

CRISPR Products

miRNA for ISYNA1 Gene

miRTarBase miRNAs that target ISYNA1

Inhibitory RNA Products

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ISYNA1 Gene

Localization for ISYNA1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ISYNA1 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ISYNA1 gene
Compartment Confidence
cytosol 5
nucleus 2
endoplasmic reticulum 2
plasma membrane 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for ISYNA1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA,IBA --
GO:0005829 cytosol TAS --
genes like me logo Genes that share ontologies with ISYNA1: view

Pathways & Interactions for ISYNA1 Gene

genes like me logo Genes that share pathways with ISYNA1: view

Pathways by source for ISYNA1 Gene

UniProtKB/Swiss-Prot Q9NPH2-INO1_HUMAN

  • Pathway: Polyol metabolism; myo-inositol biosynthesis; myo-inositol from D-glucose 6-phosphate: step 1/2.

Gene Ontology (GO) - Biological Process for ISYNA1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006021 inositol biosynthetic process IEA --
GO:0006629 lipid metabolic process IEA --
GO:0008654 phospholipid biosynthetic process IEA --
GO:0043647 inositol phosphate metabolic process TAS --
genes like me logo Genes that share ontologies with ISYNA1: view

No data available for SIGNOR curated interactions for ISYNA1 Gene

Drugs & Compounds for ISYNA1 Gene

(6) Drugs for ISYNA1 Gene - From: DrugBank and HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Glycerol Approved, Experimental Pharma Target 238
2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate Experimental Pharma Target 0
2-Deoxy-Glucitol-6-Phosphate Experimental Pharma Target 0
Glucose 6-phosphate Experimental Pharma 0
NAD Pharma Full agonist, Agonist 0

(3) Additional Compounds for ISYNA1 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
1D-myo-Inositol 3-phosphate
  • 1D-Myo-Inositol 3-monophosphate
  • 1L-Myo-Inositol 1-phosphate
  • D-Myo-Inositol 3-monophosphate
  • D-Myo-Inositol 3-phosphate
  • Inositol 3-monophosphate
2831-74-5
Inositol phosphate
  • 1D-Myo-Inositol 1-monophosphate
  • 1D-Myo-Inositol 1-phosphate
  • D-Myo-Inositol-1-Phosphate
  • Inositol 1-monophosphate
15421-51-9
Myo-inositol 1-phosphate
  • 1-(Dihydrogen phosphate) DL-myo-Inositol
  • 1-(Dihydrogen phosphate) myo-Inositol
  • DL-myo-Inositol 1-phosphate
  • Myo-Inositol 1-monophosphate
  • Myo-Inositol 1-phosphate
573-35-3
genes like me logo Genes that share compounds with ISYNA1: view

Transcripts for ISYNA1 Gene

Unigene Clusters for ISYNA1 Gene

Inositol-3-phosphate synthase 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for ISYNA1 Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2 ^ 3a · 3b ^ 4a · 4b · 4c · 4d ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8a · 8b ^ 9a · 9b · 9c ^ 10a · 10b ^ 11a · 11b ·
SP1: - - - -
SP2: - - - - - -
SP3: - -
SP4: - -
SP5: - - - - - - - -
SP6: - - - - - - -
SP7: - - - - - - -
SP8: - - - - - - - - -
SP9: -
SP10: - -
SP11: - - -
SP12: - - -
SP13:
SP14: - - - - - - -
SP15: -

ExUns: 11c ^ 12a · 12b · 12c
SP1: -
SP2: -
SP3: -
SP4: -
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:
SP14:
SP15:

Relevant External Links for ISYNA1 Gene

GeneLoc Exon Structure for
ISYNA1
ECgene alternative splicing isoforms for
ISYNA1

Expression for ISYNA1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ISYNA1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ISYNA1 Gene

This gene is overexpressed in Testis (x7.3).

Protein differential expression in normal tissues from HIPED for ISYNA1 Gene

This gene is overexpressed in Testis (18.7) and Fetal ovary (7.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for ISYNA1 Gene



Protein tissue co-expression partners for ISYNA1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of ISYNA1 Gene:

ISYNA1

SOURCE GeneReport for Unigene cluster for ISYNA1 Gene:

Hs.405873

mRNA Expression by UniProt/SwissProt for ISYNA1 Gene:

Q9NPH2-INO1_HUMAN
Tissue specificity: Highly expressed in testis, ovary, heart, placenta and pancreas. Weakly expressed in blood leukocyte, thymus, skeletal muscle and colon.

Evidence on tissue expression from TISSUES for ISYNA1 Gene

  • Nervous system(4.8)
  • Eye(2.2)
genes like me logo Genes that share expression patterns with ISYNA1: view

Primer Products

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for ISYNA1 Gene

Orthologs for ISYNA1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for ISYNA1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ISYNA1 34 35
  • 99.58 (n)
dog
(Canis familiaris)
Mammalia ISYNA1 34 35
  • 88.25 (n)
cow
(Bos Taurus)
Mammalia ISYNA1 34 35
  • 87.77 (n)
mouse
(Mus musculus)
Mammalia Isyna1 34 16 35
  • 82.49 (n)
rat
(Rattus norvegicus)
Mammalia Isyna1 34
  • 82.43 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia ISYNA1 35
  • 71 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ISYNA1 35
  • 71 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia isyna1 34
  • 65.99 (n)
Str.563 34
African clawed frog
(Xenopus laevis)
Amphibia MGC52653 34
fruit fly
(Drosophila melanogaster)
Insecta Inos 36 34 35
  • 66.73 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP011830 34
  • 65.86 (n)
worm
(Caenorhabditis elegans)
Secernentea inos-1 34 35
  • 57.53 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes INO1 34 35
  • 54.13 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0D16412g 34
  • 53.07 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons MIPS3 34
  • 59.93 (n)
soybean
(Glycine max)
eudicotyledons Gma.15564 34
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.7841 34
rice
(Oryza sativa)
Liliopsida Os03g0192700 34
  • 65 (n)
barley
(Hordeum vulgare)
Liliopsida Hv.974 34
wheat
(Triticum aestivum)
Liliopsida Ta.220 34
corn
(Zea mays)
Liliopsida Zm.2986 34
bread mold
(Neurospora crassa)
Ascomycetes NCU06666 34
  • 63.21 (n)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.14431 34
Species where no ortholog for ISYNA1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • zebrafish (Danio rerio)

Evolution for ISYNA1 Gene

ENSEMBL:
Gene Tree for ISYNA1 (if available)
TreeFam:
Gene Tree for ISYNA1 (if available)

Paralogs for ISYNA1 Gene

Pseudogenes.org Pseudogenes for ISYNA1 Gene

genes like me logo Genes that share paralogs with ISYNA1: view

No data available for Paralogs for ISYNA1 Gene

Variants for ISYNA1 Gene

Sequence variations from dbSNP and Humsavar for ISYNA1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000104116 -- 18,438,462(+) GGCCT(-/C)CCGGG upstream-variant-2KB
rs1000539586 -- 18,438,576(+) CCCTT(C/T)GTGGG upstream-variant-2KB
rs1001141260 -- 18,437,319(+) AGTCC(C/G)CGCTA intron-variant, upstream-variant-2KB
rs1001336449 -- 18,439,096(+) CCAGT(-/G)GGTGG upstream-variant-2KB
rs1001719078 -- 18,435,826(+) ACGTT(G/T)CTCTT nc-transcript-variant, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for ISYNA1 Gene

Variant ID Type Subtype PubMed ID
esv2677302 CNV deletion 23128226
nsv482217 CNV gain 20164927
nsv952420 CNV deletion 24416366

Variation tolerance for ISYNA1 Gene

Residual Variation Intolerance Score: 18.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.94; 36.04% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ISYNA1 Gene

Human Gene Mutation Database (HGMD)
ISYNA1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
ISYNA1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ISYNA1 Gene

Disorders for ISYNA1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for ISYNA1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
fungal meningitis
  • meningitis, fungal
whipple disease
  • intestinal lipodystrophy
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for ISYNA1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ISYNA1
genes like me logo Genes that share disorders with ISYNA1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ISYNA1 Gene

Publications for ISYNA1 Gene

  1. Human 1-D-myo-inositol-3-phosphate synthase is functional in yeast. (PMID: 15024000) Ju S. … Greenberg M.L. (J. Biol. Chem. 2004) 2 3 4 64
  2. cDNA cloning and gene expression analysis of human myo-inositol 1- phosphate synthase. (PMID: 12941308) Guan G. … Shechter I. (Arch. Biochem. Biophys. 2003) 2 3 4 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  4. E2F1 regulation of the human myo-inositol 1-phosphate synthase (ISYNA1) gene promoter. (PMID: 15464731) Seelan R.S. … Parthasarathy R.N. (Arch. Biochem. Biophys. 2004) 3 4 64
  5. ABCE1 is a highly conserved RNA silencing suppressor. (PMID: 25659154) KAorblane K. … Sarmiento C. (PLoS ONE 2015) 3 64

Products for ISYNA1 Gene

Sources for ISYNA1 Gene

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