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Aliases for ISX-AS1 Gene

Subcategory (RNA class) for ISX-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ISX-AS1 Gene

  • ISX Antisense RNA 1 2 3 5

External Ids for ISX-AS1 Gene

Previous GeneCards Identifiers for ISX-AS1 Gene

  • GC22M034922

Summaries for ISX-AS1 Gene

GeneCards Summary for ISX-AS1 Gene

ISX-AS1 (ISX Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for ISX-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ISX-AS1 Gene

Genomics for ISX-AS1 Gene

Regulatory Elements for ISX-AS1 Gene

Enhancers for ISX-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22H035130 1.3 FANTOM5 ENCODE dbSUPER 6.7 -128.8 -128782 1.5 HDAC1 TAL1 TCF12 CTBP1 NCOR1 EED ADNP NFE2 RUNX3 CREM ISX-AS1 GC22P035126 ENSG00000238153
GH22H035047 0.5 FANTOM5 17.3 -44.6 -44614 0.2 POLR2A RELA ISX-AS1 TOM1 HMOX1 ISX
GH22H035102 0.9 ENCODE dbSUPER 8.1 -100.7 -100741 2.1 CTCF FEZF1 REST EBF1 OSR2 PRDM6 MTA1 IKZF1 EED RUNX3 ISX-AS1 GC22M035079 GC22P035120
GH22H035064 0.9 ENCODE 7.6 -64.0 -63960 4.7 HDAC1 ELF3 PKNOX1 FOXA2 BATF RFX5 ATF7 RUNX3 IKZF2 CREM ISX-AS1 ISX GC22P035086
GH22H035115 0.7 ENCODE dbSUPER 7.2 -114.2 -114185 2.4 CTCF ZBTB40 ISX-AS1 GC22P035120 GC22M035079
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ISX-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for ISX-AS1 Gene

Genomic Locations for ISX-AS1 Gene
chr22:34,997,719-35,002,862
(GRCh38/hg38)
Size:
5,144 bases
Orientation:
Minus strand
chr22:35,318,599-35,468,259
(GRCh37/hg19)

Genomic View for ISX-AS1 Gene

Genes around ISX-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ISX-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ISX-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ISX-AS1 Gene

Proteins for ISX-AS1 Gene

Post-translational modifications for ISX-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ISX-AS1 Gene

Domains & Families for ISX-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ISX-AS1 Gene

Function for ISX-AS1 Gene

Phenotypes From GWAS Catalog for ISX-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ISX-AS1 Gene

Localization for ISX-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for ISX-AS1 Gene

Pathways & Interactions for ISX-AS1 Gene

SuperPathways for ISX-AS1 Gene

No Data Available

Interacting Proteins for ISX-AS1 Gene

Gene Ontology (GO) - Biological Process for ISX-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ISX-AS1 Gene

Drugs & Compounds for ISX-AS1 Gene

No Compound Related Data Available

Transcripts for ISX-AS1 Gene

mRNA/cDNA for ISX-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ISX-AS1 Gene

No ASD Table

Relevant External Links for ISX-AS1 Gene

GeneLoc Exon Structure for
ISX-AS1
ECgene alternative splicing isoforms for
ISX-AS1

Expression for ISX-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ISX-AS1 Gene

genes like me logo Genes that share expression patterns with ISX-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ISX-AS1 Gene

Orthologs for ISX-AS1 Gene

Evolution for ISX-AS1 Gene

ENSEMBL:
Gene Tree for ISX-AS1 (if available)
TreeFam:
Gene Tree for ISX-AS1 (if available)

No data available for Orthologs for ISX-AS1 Gene

Paralogs for ISX-AS1 Gene

No data available for Paralogs for ISX-AS1 Gene

Variants for ISX-AS1 Gene

Sequence variations from dbSNP and Humsavar for ISX-AS1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000003710 -- 34,838,396(+) ATTTC(A/C)TTTCC intron-variant
rs1000004902 -- 34,773,753(+) TAGGG(G/T)GTCAT intron-variant
rs1000014298 -- 34,757,785(+) ATAGG(G/T)TGTGT nc-transcript-variant
rs1000026986 -- 34,962,925(+) TTCCT(A/C)CATTA intron-variant
rs1000033632 -- 34,766,664(+) TTCTT(G/T)ACTCC intron-variant

Relevant External Links for ISX-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ISX-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for ISX-AS1 Gene

Disorders for ISX-AS1 Gene

Relevant External Links for ISX-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ISX-AS1

No disorders were found for ISX-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ISX-AS1 Gene

Publications for ISX-AS1 Gene

  1. Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. (PMID: 23319000) Luykx JJ … Ophoff RA (Molecular psychiatry 2014) 3 60

Products for ISX-AS1 Gene

Sources for ISX-AS1 Gene

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