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Aliases for ISX Gene

Aliases for ISX Gene

  • Intestine-Specific Homeobox 2 3
  • RAXLX 3 4 6
  • RAX-Like Homeobox 3 4
  • Pancreas-Intestine Homeodomain Transcription Factor 3
  • Pix-1 3

External Ids for ISX Gene

Previous GeneCards Identifiers for ISX Gene

  • GC22P033792
  • GC22P035462
  • GC22P018424

Summaries for ISX Gene

Entrez Gene Summary for ISX Gene

  • Homeobox genes encode DNA-binding proteins, many of which are thought to be involved in early embryonic development. Homeobox genes encode a DNA-binding domain of 60 to 63 amino acids referred to as the homeodomain. This gene is a member of the RAXLX homeobox gene family. [provided by RefSeq, Jul 2008]

GeneCards Summary for ISX Gene

ISX (Intestine-Specific Homeobox) is a Protein Coding gene. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity and sequence-specific DNA binding. An important paralog of this gene is PHOX2B.

UniProtKB/Swiss-Prot for ISX Gene

  • Transcription factor that regulates gene expression in intestine. May participate in vitamin A metabolism most likely by regulating BCO1 expression in the intestine (By similarity).

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ISX Gene

Genomics for ISX Gene

Genomic Location for ISX Gene

35,066,136 bp from pter
35,087,387 bp from pter
21,252 bases
Plus strand

Genomic View for ISX Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ISX Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ISX Gene

No data available for Regulatory Elements for ISX Gene

Proteins for ISX Gene

  • Protein details for ISX Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Intestine-specific homeobox
    Protein Accession:
    Secondary Accessions:
    • Q68DJ5

    Protein attributes for ISX Gene

    245 amino acids
    Molecular mass:
    27011 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ISX Gene

Proteomics data for ISX Gene at MOPED

Post-translational modifications for ISX Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ISX Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ISX Gene

Domains for ISX Gene

Gene Families for ISX Gene

  • PRD :Homeoboxes / PRD class

Protein Domains for ISX Gene

Suggested Antigen Peptide Sequences for ISX Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Q2M1V0
  • Contains 1 homeobox DNA-binding domain.
genes like me logo Genes that share domains with ISX: view

Function for ISX Gene

Molecular function for ISX Gene

UniProtKB/Swiss-Prot Function:
Transcription factor that regulates gene expression in intestine. May participate in vitamin A metabolism most likely by regulating BCO1 expression in the intestine (By similarity).

Gene Ontology (GO) - Molecular Function for ISX Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding --
GO:0043565 sequence-specific DNA binding IEA --
genes like me logo Genes that share ontologies with ISX: view

Phenotypes for ISX Gene

genes like me logo Genes that share phenotypes with ISX: view

Animal Models for ISX Gene

MGI Knock Outs for ISX:

Animal Model Products

miRNA for ISX Gene

miRTarBase miRNAs that target ISX

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for ISX Gene

Localization for ISX Gene

Subcellular locations from UniProtKB/Swiss-Prot for ISX Gene


Subcellular locations from

Jensen Localization Image for ISX Gene COMPARTMENTS Subcellular localization image for ISX gene
Compartment Confidence
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for ISX Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with ISX: view

Pathways for ISX Gene

SuperPathways for ISX Gene

No Data Available

Interacting Proteins for ISX Gene

Gene Ontology (GO) - Biological Process for ISX Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006357 regulation of transcription from RNA polymerase II promoter IEA --
GO:1901738 regulation of vitamin A metabolic process IEA --
genes like me logo Genes that share ontologies with ISX: view

No data available for Pathways by source for ISX Gene

Transcripts for ISX Gene

mRNA/cDNA for ISX Gene

(9) Selected AceView cDNA sequences:
(2) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ISX Gene

Intestine-specific homeobox:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ISX

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ISX Gene

No ASD Table

Relevant External Links for ISX Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ISX Gene

mRNA expression in normal human tissues for ISX Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ISX Gene

This gene is overexpressed in Colon - Transverse (33.8) and Small Intestine - Terminal Ileum (16.7).

SOURCE GeneReport for Unigene cluster for ISX Gene Hs.567637

genes like me logo Genes that share expressions with ISX: view

In Situ Assay Products

No data available for Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for ISX Gene

Orthologs for ISX Gene

This gene was present in the common ancestor of animals.

Orthologs for ISX Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia ISX 35
  • 78.27 (n)
  • 68.72 (a)
ISX 36
  • 63 (a)
(Canis familiaris)
Mammalia ISX 35
  • 79.89 (n)
  • 71.55 (a)
ISX 36
  • 70 (a)
(Mus musculus)
Mammalia Isx 35
  • 72.52 (n)
  • 64.44 (a)
Isx 16
Isx 36
  • 64 (a)
(Pan troglodytes)
Mammalia ISX 35
  • 99.05 (n)
  • 98.78 (a)
ISX 36
  • 99 (a)
(Rattus norvegicus)
Mammalia Isx 35
  • 72.54 (n)
  • 66.96 (a)
(Monodelphis domestica)
Mammalia ISX 36
  • 46 (a)
(Gallus gallus)
Aves ISX 35
  • 59.39 (n)
  • 48.85 (a)
ISX 36
  • 34 (a)
(Anolis carolinensis)
Reptilia ISX 36
  • 64 (a)
(Danio rerio)
Actinopterygii rx1 36
  • 22 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG11294 36
  • 20 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 50 (a)
Species with no ortholog for ISX:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ISX Gene

Gene Tree for ISX (if available)
Gene Tree for ISX (if available)

Paralogs for ISX Gene

Paralogs for ISX Gene

Selected SIMAP similar genes for ISX Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ISX: view

Variants for ISX Gene

Sequence variations from dbSNP and Humsavar for ISX Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type MAF
rs725266 -- 35,082,865(-) TTCCC(A/G)GAGGA intron-variant
rs725267 -- 35,082,695(-) AGGCT(A/G)GGGGC intron-variant
rs728768 -- 35,078,092(+) TATAG(A/T)CCCAT intron-variant
rs738423 -- 35,075,506(+) ACACT(C/T)CAATA intron-variant
rs1074970 -- 35,083,387(+) TCGGA(A/G)ACCTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ISX Gene

Variant ID Type Subtype PubMed ID
nsv834182 CNV Gain 17160897
esv34121 CNV Loss 18971310
dgv1401e1 CNV Complex 17122850
nsv834183 CNV Gain 17160897
esv35003 CNV Loss 17911159
esv26909 CNV Gain 19812545
essv7049 CNV CNV 17122850
esv2661366 CNV Deletion 23128226
nsv817989 CNV Loss 17921354
esv28292 CNV Loss 19812545
nsv820628 CNV Duplication 20802225

Relevant External Links for ISX Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ISX Gene

Disorders for ISX Gene

Relevant External Links for ISX

Genetic Association Database (GAD)

No disorders were found for ISX Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for ISX Gene

Publications for ISX Gene

  1. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  3. The DNA sequence of human chromosome 22. (PMID: 10591208) Dunham I. … Wright H. (Nature 1999) 4
  4. Genome-wide association study identifies variants in the MHC class I, IL10, and IL23R-IL12RB2 regions associated with BehAset's disease. (PMID: 20622878) Remmers E.F. … GA1l A. (Nat. Genet. 2010) 48
  5. Genetics and diet regulate vitamin A production via the homeobox transcription factor ISX. (PMID: 23393141) Lobo G.P. … von Lintig J. (J. Biol. Chem. 2013) 3

Products for ISX Gene

Sources for ISX Gene

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