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Aliases for ISPD-AS1 Gene

Subcategory (RNA class) for ISPD-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ISPD-AS1 Gene

  • ISPD Antisense RNA 1 2 3 5

External Ids for ISPD-AS1 Gene

Summaries for ISPD-AS1 Gene

GeneCards Summary for ISPD-AS1 Gene

ISPD-AS1 (ISPD Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ISPD-AS1 Gene

Genomics for ISPD-AS1 Gene

Regulatory Elements for ISPD-AS1 Gene

Enhancers for ISPD-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F016025 0.8 Ensembl ENCODE 4.4 -183.1 -183078 3.2 SMARCA4 ATF3 JUN BHLHE40 FEZF1 FOS RAD21 ISPD-AS1 GC07M015956 RPL36AP29
GH07F015547 0.2 Ensembl 5.7 -662.8 -662777 0.6 ISPD-AS1 AGMO GC07M015516
GH07F016211 0.4 ENCODE 0.8 +1.3 1285 0.2 CEBPB ISPD-AS1 GC07P016267
GH07F016212 0.4 ENCODE 0.8 +2.2 2206 1.3 CEBPB ISPD-AS1 GC07P016267
GH07F016216 0.6 Ensembl 0.4 +6.2 6221 0.6 BCOR ZNF146 HDAC2 ZBTB33 TRIM24 KDM1A CHAMP1 RPL36AP29 SOSTDC1 ISPD-AS1 GC07P016267
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ISPD-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ISPD-AS1 Gene

Chromosome:
7
Start:
16,210,486 bp from pter
End:
16,270,604 bp from pter
Size:
60,119 bases
Orientation:
Plus strand

Genomic View for ISPD-AS1 Gene

Genes around ISPD-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ISPD-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ISPD-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ISPD-AS1 Gene

Proteins for ISPD-AS1 Gene

Post-translational modifications for ISPD-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ISPD-AS1 Gene

Domains & Families for ISPD-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ISPD-AS1 Gene

Function for ISPD-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ISPD-AS1 Gene

Localization for ISPD-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ISPD-AS1 Gene

Pathways & Interactions for ISPD-AS1 Gene

SuperPathways for ISPD-AS1 Gene

No Data Available

Interacting Proteins for ISPD-AS1 Gene

Gene Ontology (GO) - Biological Process for ISPD-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ISPD-AS1 Gene

Transcripts for ISPD-AS1 Gene

mRNA/cDNA for ISPD-AS1 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for ISPD-AS1 Gene

No ASD Table

Relevant External Links for ISPD-AS1 Gene

GeneLoc Exon Structure for
ISPD-AS1
ECgene alternative splicing isoforms for
ISPD-AS1

Expression for ISPD-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ISPD-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ISPD-AS1 Gene

This gene is overexpressed in Testis (x41.3).
genes like me logo Genes that share expression patterns with ISPD-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ISPD-AS1 Gene

Orthologs for ISPD-AS1 Gene

Evolution for ISPD-AS1 Gene

ENSEMBL:
Gene Tree for ISPD-AS1 (if available)
TreeFam:
Gene Tree for ISPD-AS1 (if available)

No data available for Orthologs for ISPD-AS1 Gene

Paralogs for ISPD-AS1 Gene

No data available for Paralogs for ISPD-AS1 Gene

Variants for ISPD-AS1 Gene

Sequence variations from dbSNP and Humsavar for ISPD-AS1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs397515396 Pathogenic 16,216,198(-) TTGCA(G/T)GTTCA intron-variant, splice-acceptor-variant
rs587777798 Pathogenic 16,258,393(-) TTGTT(-/GTT)TCAGT intron-variant, nc-transcript-variant, cds-indel
rs141625803 Likely benign 16,216,097(+) ATAAC(A/G)AAATA intron-variant, nc-transcript-variant, reference, missense
rs181099904 Uncertain significance 16,258,450(+) AGTAA(C/T)TTCTG intron-variant, nc-transcript-variant, downstream-variant-500B, reference, synonymous-codon
rs185594460 Uncertain significance 16,258,455(+) CTTCT(G/T)GGTTT intron-variant, nc-transcript-variant, downstream-variant-500B, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for ISPD-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv470133 CNV loss 18288195
nsv1030704 CNV loss 25217958
nsv1022814 CNV loss 25217958
nsv1017498 CNV loss 25217958
esv3612387 CNV loss 21293372
esv34298 CNV loss 17911159
esv3380217 CNV insertion 20981092
esv3308996 CNV mobile element insertion 20981092
esv2759514 CNV loss 17122850
esv2734053 CNV deletion 23290073
esv2734052 CNV deletion 23290073
esv2659119 CNV deletion 23128226
dgv6289n100 CNV gain 25217958

Relevant External Links for ISPD-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ISPD-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ISPD-AS1 Gene

Disorders for ISPD-AS1 Gene

Relevant External Links for ISPD-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ISPD-AS1

No disorders were found for ISPD-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ISPD-AS1 Gene

Publications for ISPD-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ISPD-AS1 Gene

Sources for ISPD-AS1 Gene

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