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Aliases for ISM1-AS1 Gene

Subcategory (RNA class) for ISM1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ISM1-AS1 Gene

  • ISM1 Antisense RNA 1 2 3 5
  • ISM1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ISM1-AS1 Gene

Previous GeneCards Identifiers for ISM1-AS1 Gene

  • GC20M013220

Summaries for ISM1-AS1 Gene

GeneCards Summary for ISM1-AS1 Gene

ISM1-AS1 (ISM1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ISM1-AS1 Gene

Genomics for ISM1-AS1 Gene

Regulatory Elements for ISM1-AS1 Gene

Enhancers for ISM1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20G013246 1.1 Ensembl ENCODE 11.8 -8.0 -8006 2.3 HDGF FOXA2 GATA2 EED NR2F6 FOS ETV6 RELB IKZF2 CREM ISM1-AS1 ISM1 ENSG00000225956 ENSG00000278153
GH20G013230 1.2 FANTOM5 Ensembl ENCODE 8.3 +8.4 8358 1.4 RFX1 MTA2 HLF ZFHX2 GLIS1 FOS WT1 EGR2 ENSG00000225956 ISM1-AS1 ISM1 TASP1 LOC105372539
GH20G013274 0.7 Ensembl ENCODE 11 -34.8 -34752 0.4 SMARCA4 HLF ENSG00000225956 ISM1-AS1 ISM1 ENSG00000278153
GH20G013285 0.7 ENCODE 10.8 -46.6 -46590 2.0 ESRRA MAX ZNF384 RAD21 YY1 ZNF143 THAP11 HCFC1 SIX5 MNT ISM1-AS1 ENSG00000225956 ENSG00000278153
GH20G013302 0.6 ENCODE 10.6 -63.5 -63511 0.7 CTCF ZNF143 SMC3 KDM1A ZNF644 HNRNPL RAD21 ENSG00000225956 ISM1-AS1 ENSG00000278153
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ISM1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ISM1-AS1 Gene

Chromosome:
20
Start:
13,237,420 bp from pter
End:
13,239,687 bp from pter
Size:
2,268 bases
Orientation:
Minus strand

Genomic View for ISM1-AS1 Gene

Genes around ISM1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ISM1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ISM1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ISM1-AS1 Gene

Proteins for ISM1-AS1 Gene

Post-translational modifications for ISM1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ISM1-AS1 Gene

Domains & Families for ISM1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ISM1-AS1 Gene

Function for ISM1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ISM1-AS1 Gene

Localization for ISM1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ISM1-AS1 Gene

Pathways & Interactions for ISM1-AS1 Gene

SuperPathways for ISM1-AS1 Gene

No Data Available

Interacting Proteins for ISM1-AS1 Gene

Gene Ontology (GO) - Biological Process for ISM1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ISM1-AS1 Gene

Drugs & Compounds for ISM1-AS1 Gene

No Compound Related Data Available

Transcripts for ISM1-AS1 Gene

mRNA/cDNA for ISM1-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ISM1-AS1 Gene

ISM1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ISM1-AS1 Gene

No ASD Table

Relevant External Links for ISM1-AS1 Gene

GeneLoc Exon Structure for
ISM1-AS1
ECgene alternative splicing isoforms for
ISM1-AS1

Expression for ISM1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ISM1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ISM1-AS1 Gene

This gene is overexpressed in Testis (x13.5).

SOURCE GeneReport for Unigene cluster for ISM1-AS1 Gene:

Hs.665253
genes like me logo Genes that share expression patterns with ISM1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for ISM1-AS1 Gene

Orthologs for ISM1-AS1 Gene

Evolution for ISM1-AS1 Gene

ENSEMBL:
Gene Tree for ISM1-AS1 (if available)
TreeFam:
Gene Tree for ISM1-AS1 (if available)

No data available for Orthologs for ISM1-AS1 Gene

Paralogs for ISM1-AS1 Gene

No data available for Paralogs for ISM1-AS1 Gene

Variants for ISM1-AS1 Gene

Sequence variations from dbSNP and Humsavar for ISM1-AS1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1000122756 -- 13,240,974(+) TGAAG(C/T)GGACA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1000234650 -- 13,241,314(+) GGGAG(A/G)TATAT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1001733547 -- 13,241,386(+) GAGGC(C/T)GATGA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1001889273 -- 13,237,405(+) TGACA(A/G)CTATA intron-variant, nc-transcript-variant
rs1002080713 -- 13,238,860(+) ATCCA(A/C)TTCTG intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for ISM1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv4247n100 CNV gain 25217958
esv3893288 CNV gain 25118596
nsv1058035 CNV loss 25217958
nsv1060853 CNV gain 25217958
nsv518184 CNV gain 19592680

Relevant External Links for ISM1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ISM1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ISM1-AS1 Gene

Disorders for ISM1-AS1 Gene

Relevant External Links for ISM1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ISM1-AS1

No disorders were found for ISM1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ISM1-AS1 Gene

Publications for ISM1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ISM1-AS1 Gene

Sources for ISM1-AS1 Gene

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