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Aliases for ISM1-AS1 Gene

Subcategory (RNA class) for ISM1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for ISM1-AS1 Gene

  • ISM1 Antisense RNA 1 2 3 5
  • ISM1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for ISM1-AS1 Gene

Previous GeneCards Identifiers for ISM1-AS1 Gene

  • GC20M013220

Summaries for ISM1-AS1 Gene

GeneCards Summary for ISM1-AS1 Gene

ISM1-AS1 (ISM1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ISM1-AS1 Gene

Genomics for ISM1-AS1 Gene

Regulatory Elements for ISM1-AS1 Gene

Enhancers for ISM1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F013285 0.7 ENCODE 21.6 -46.6 -46590 2.0 ESRRA HCFC1 SIX5 ZNF384 MNT RAD21 YY1 JUND ATF3 ZNF143 ISM1-AS1 GAPDHP2 ENSG00000225956 ENSG00000278153
GH20F013246 1 Ensembl ENCODE 11.7 -8.0 -8006 2.3 HDGF MTA2 CBFB JUNB TBX21 GABPA NR2F2 TARDBP EED IKZF1 ISM1-AS1 ISM1 ENSG00000225956 ENSG00000278153
GH20F013230 1.2 FANTOM5 Ensembl ENCODE 8.3 +8.4 8358 1.4 ZFHX2 RFX1 MTA2 GLIS1 HLF WT1 EGR2 ENSG00000225956 ISM1-AS1 ISM1 TASP1 LOC105372539
GH20F013274 0.7 Ensembl ENCODE 11 -34.7 -34741 0.4 SMARCA4 HLF ENSG00000225956 ISM1-AS1 ISM1 ENSG00000278153
GH20F013302 0.6 ENCODE 10.6 -63.5 -63511 0.7 CTCF ZNF143 SMC3 ZNF644 RAD21 ENSG00000225956 ISM1-AS1 ENSG00000278153
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ISM1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ISM1-AS1 Gene

13,237,420 bp from pter
13,239,687 bp from pter
2,268 bases
Minus strand

Genomic View for ISM1-AS1 Gene

Genes around ISM1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ISM1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ISM1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ISM1-AS1 Gene

Proteins for ISM1-AS1 Gene

Post-translational modifications for ISM1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ISM1-AS1 Gene

Domains & Families for ISM1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ISM1-AS1 Gene

Function for ISM1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ISM1-AS1 Gene

Localization for ISM1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ISM1-AS1 Gene

Pathways & Interactions for ISM1-AS1 Gene

SuperPathways for ISM1-AS1 Gene

No Data Available

Interacting Proteins for ISM1-AS1 Gene

Gene Ontology (GO) - Biological Process for ISM1-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for ISM1-AS1 Gene

Transcripts for ISM1-AS1 Gene

mRNA/cDNA for ISM1-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ISM1-AS1 Gene

ISM1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ISM1-AS1 Gene

No ASD Table

Relevant External Links for ISM1-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for ISM1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ISM1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for ISM1-AS1 Gene

This gene is overexpressed in Testis (x13.5).

SOURCE GeneReport for Unigene cluster for ISM1-AS1 Gene:

genes like me logo Genes that share expression patterns with ISM1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for ISM1-AS1 Gene

Orthologs for ISM1-AS1 Gene

Evolution for ISM1-AS1 Gene

Gene Tree for ISM1-AS1 (if available)
Gene Tree for ISM1-AS1 (if available)

No data available for Orthologs for ISM1-AS1 Gene

Paralogs for ISM1-AS1 Gene

No data available for Paralogs for ISM1-AS1 Gene

Variants for ISM1-AS1 Gene

Sequence variations from dbSNP and Humsavar for ISM1-AS1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1060579 -- 13,237,686(-) AAATA(C/T)ACACA intron-variant, nc-transcript-variant
rs1060580 -- 13,237,679(-) CACAT(A/C)TATAA intron-variant, nc-transcript-variant
rs112638008 -- 13,238,980(+) GACAC(A/G)AACCA intron-variant, nc-transcript-variant
rs113961338 -- 13,240,267(+) CAGAA(C/T)AAAGG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs114621709 -- 13,241,099(+) CTGTG(A/G)GAACA intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ISM1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv518184 CNV gain 19592680
nsv1060853 CNV gain 25217958
nsv1058035 CNV loss 25217958
esv3893288 CNV gain 25118596
dgv4247n100 CNV gain 25217958

Relevant External Links for ISM1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ISM1-AS1 Gene

Disorders for ISM1-AS1 Gene

Relevant External Links for ISM1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for ISM1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ISM1-AS1 Gene

Publications for ISM1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for ISM1-AS1 Gene

Sources for ISM1-AS1 Gene

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