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Aliases for ISM1 Gene

Aliases for ISM1 Gene

  • Isthmin 1 2 3 5
  • Isthmin 1, Angiogenesis Inhibitor 2 3
  • C20orf82 3 4
  • ISM 3 4
  • Chromosome 20 Open Reading Frame 82 2
  • Isthmin 1 Homolog (Zebrafish) 2
  • Isthmin 1 Homolog 3
  • BA149I18.1 3
  • DJ1077I2.1 3
  • Isthmin-1 3
  • Isthmin 3

External Ids for ISM1 Gene

Previous HGNC Symbols for ISM1 Gene

  • C20orf82

Previous GeneCards Identifiers for ISM1 Gene

  • GC20P013150

Summaries for ISM1 Gene

GeneCards Summary for ISM1 Gene

ISM1 (Isthmin 1) is a Protein Coding gene. An important paralog of this gene is ISM2.

UniProtKB/Swiss-Prot for ISM1 Gene

  • Acts as an angiogenesis inhibitor.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ISM1 Gene

Genomics for ISM1 Gene

Regulatory Elements for ISM1 Gene

Enhancers for ISM1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F013262 0.5 ENCODE 11.5 +40.5 40478 0.2 ELF3 ARID4B ZNF48 ZSCAN9 DNMT3B RAD21 ZNF143 MIXL1 HMG20B SP5 ISM1 ENSG00000225956 ENSG00000278153
GH20F013263 0.7 Ensembl 11.5 +41.2 41230 0.8 ATF1 MLX ZFP64 ARID4B DMAP1 ZNF48 YY1 SLC30A9 FOS SP5 ISM1 ENSG00000225956 ENSG00000278153
GH20F013246 0.8 Ensembl ENCODE 11.4 +25.9 25922 2.3 HDGF MTA2 CBFB JUNB TBX21 GABPA NR2F2 TARDBP EED IKZF1 ISM1-AS1 ISM1 ENSG00000225956 ENSG00000278153
GH20F013249 1 Ensembl ENCODE 11.4 +27.7 27715 0.6 ISM1 ENSG00000225956 ENSG00000278153
GH20F013250 0.2 ENCODE 11.4 +28.4 28378 0.7 RFX1 ISM1 ISM1-AS1 ENSG00000225956 ENSG00000278153
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ISM1 on UCSC Golden Path with GeneCards custom track

Promoters for ISM1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000398040 -271 1401 ELF3 TBP ATF1 KLF17 ARID4B ZNF48 RARA GLIS2 ZNF143 EGR2

Genomic Location for ISM1 Gene

Chromosome:
20
Start:
13,221,771 bp from pter
End:
13,300,651 bp from pter
Size:
78,881 bases
Orientation:
Plus strand

Genomic View for ISM1 Gene

Genes around ISM1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ISM1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ISM1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ISM1 Gene

Proteins for ISM1 Gene

  • Protein details for ISM1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    B1AKI9-ISM1_HUMAN
    Recommended name:
    Isthmin-1
    Protein Accession:
    B1AKI9
    Secondary Accessions:
    • Q8WVH9

    Protein attributes for ISM1 Gene

    Size:
    464 amino acids
    Molecular mass:
    52107 Da
    Quaternary structure:
    • Interacts with integrin ITGAV/ITGB5.
    SequenceCaution:
    • Sequence=CAC16127.3; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAC36074.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=EAX10318.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for ISM1 Gene

Post-translational modifications for ISM1 Gene

  • Glycosylation at Asn 39
  • Modification sites at PhosphoSitePlus

Other Protein References for ISM1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ISM1 Gene

Domains & Families for ISM1 Gene

Protein Domains for ISM1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for ISM1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

B1AKI9

UniProtKB/Swiss-Prot:

ISM1_HUMAN :
  • The C-terminal AMOP domain plays an important role in the anti-angiogenic function of ISM1.
  • Belongs to the isthmin family.
Domain:
  • The C-terminal AMOP domain plays an important role in the anti-angiogenic function of ISM1.
  • Contains 1 AMOP domain.
  • Contains 1 TSP type-1 domain.
Family:
  • Belongs to the isthmin family.
genes like me logo Genes that share domains with ISM1: view

No data available for Gene Families for ISM1 Gene

Function for ISM1 Gene

Molecular function for ISM1 Gene

UniProtKB/Swiss-Prot Function:
Acts as an angiogenesis inhibitor.

Phenotypes for ISM1 Gene

genes like me logo Genes that share phenotypes with ISM1: view

Animal Model Products

miRNA for ISM1 Gene

miRTarBase miRNAs that target ISM1

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ISM1 Gene

Localization for ISM1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ISM1 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ISM1 Gene COMPARTMENTS Subcellular localization image for ISM1 gene
Compartment Confidence
extracellular 5
plasma membrane 2
lysosome 1
vacuole 1

Gene Ontology (GO) - Cellular Components for ISM1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with ISM1: view

Pathways & Interactions for ISM1 Gene

SuperPathways for ISM1 Gene

No Data Available

Interacting Proteins for ISM1 Gene

Selected Interacting proteins: B1AKI9-ISM1_HUMAN for ISM1 Gene via IID

Gene Ontology (GO) - Biological Process for ISM1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ISM1 Gene

Transcripts for ISM1 Gene

mRNA/cDNA for ISM1 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(28) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ISM1 Gene

Isthmin 1 homolog (zebrafish):
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ISM1 Gene

No ASD Table

Relevant External Links for ISM1 Gene

GeneLoc Exon Structure for
ISM1
ECgene alternative splicing isoforms for
ISM1

Expression for ISM1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for ISM1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ISM1 Gene

This gene is overexpressed in Thyroid (x8.1), Artery - Tibial (x5.5), and Artery - Aorta (x4.6).

Protein differential expression in normal tissues from HIPED for ISM1 Gene

This gene is overexpressed in Cerebrospinal fluid (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for ISM1 Gene



Protein tissue co-expression partners for ISM1 Gene

NURSA nuclear receptor signaling pathways regulating expression of ISM1 Gene:

ISM1

SOURCE GeneReport for Unigene cluster for ISM1 Gene:

Hs.559353
genes like me logo Genes that share expression patterns with ISM1: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt for ISM1 Gene

Orthologs for ISM1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for ISM1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ISM1 34 35
  • 99.6 (n)
dog
(Canis familiaris)
Mammalia ISM1 34 35
  • 93.97 (n)
cow
(Bos Taurus)
Mammalia C20ORF82 35
  • 93 (a)
OneToOne
ISM1 34
  • 90.66 (n)
rat
(Rattus norvegicus)
Mammalia Ism1 34
  • 89.52 (n)
mouse
(Mus musculus)
Mammalia Ism1 34 16 35
  • 89.15 (n)
oppossum
(Monodelphis domestica)
Mammalia ISM1 35
  • 88 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ISM1 35
  • 82 (a)
OneToOne
chicken
(Gallus gallus)
Aves ISM1 34 35
  • 74.74 (n)
lizard
(Anolis carolinensis)
Reptilia ISM1 35
  • 78 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100487287 34
  • 71.93 (n)
African clawed frog
(Xenopus laevis)
Amphibia Ism 34
zebrafish
(Danio rerio)
Actinopterygii ism1 34 35
  • 67.77 (n)
Species where no ortholog for ISM1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ISM1 Gene

ENSEMBL:
Gene Tree for ISM1 (if available)
TreeFam:
Gene Tree for ISM1 (if available)

Paralogs for ISM1 Gene

Paralogs for ISM1 Gene

(1) SIMAP similar genes for ISM1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ISM1: view

Variants for ISM1 Gene

Sequence variations from dbSNP and Humsavar for ISM1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs10084529 -- 13,311,798(+) ggggt(A/G)tggaa intron-variant
rs10470061 -- 13,254,228(+) ACTCC(A/G)TCTCA intron-variant
rs10485765 -- 13,257,936(+) CCGTA(C/T)AGTGA intron-variant
rs10485766 -- 13,323,661(+) TTCCT(G/T)TAGAC intron-variant
rs1060579 -- 13,237,686(-) AAATA(C/T)ACACA intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for ISM1 Gene

Variant ID Type Subtype PubMed ID
dgv4247n100 CNV gain 25217958
esv2722201 CNV deletion 23290073
esv27679 CNV loss 19812545
esv29075 CNV gain 19812545
esv3584449 CNV loss 25503493
esv3584450 CNV loss 25503493
esv3893288 CNV gain 25118596
nsv1058035 CNV loss 25217958
nsv1060853 CNV gain 25217958
nsv1126590 CNV deletion 24896259
nsv476442 CNV novel sequence insertion 20440878
nsv518184 CNV gain 19592680
nsv952987 CNV deletion 24416366

Variation tolerance for ISM1 Gene

Residual Variation Intolerance Score: 73.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.24; 62.31% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ISM1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ISM1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ISM1 Gene

Disorders for ISM1 Gene

Relevant External Links for ISM1

Genetic Association Database (GAD)
ISM1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ISM1

No disorders were found for ISM1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ISM1 Gene

Publications for ISM1 Gene

  1. Isthmin is a novel vascular permeability inducer that functions through cell-surface GRP78-mediated Src activation. (PMID: 25952901) Venugopal S. … Ge R. (Cardiovasc. Res. 2015) 2 3 64
  2. Isthmin is a novel secreted angiogenesis inhibitor that inhibits tumour growth in mice. (PMID: 19874420) Xiang W. … Ge R. (J. Cell. Mol. Med. 2011) 2 3 64
  3. Genome-wide association study reveals genetic risk underlying Parkinson's disease. (PMID: 19915575) SimA^n-SA!nchez J. … Gasser T. (Nat. Genet. 2009) 3 46 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  5. Isthmin is a novel secreted protein expressed as part of the Fgf-8 synexpression group in the Xenopus midbrain-hindbrain organizer. (PMID: 12128218) Pera E.M. … De Robertis E.M. (Mech. Dev. 2002) 3 4 64

Products for ISM1 Gene

Sources for ISM1 Gene

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